Wall clock time and date at job start Tue Mar 31 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46724 * 2 1 4 4 C 1.52993 * 109.47241 * 240.00294 * 2 1 3 5 5 O 1.45195 * 109.47248 * 119.99638 * 2 1 3 6 6 C 1.34633 * 116.99757 * 60.00661 * 5 2 1 7 7 O 1.21511 * 120.00356 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00119 * 180.02562 * 6 5 2 9 9 C 1.46507 * 120.00451 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47385 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.47292 * 59.99654 * 10 9 8 12 12 O 1.42900 * 109.47182 * 300.00288 * 10 9 8 13 13 C 1.50691 * 109.47299 * 179.97438 * 10 9 8 14 14 O 1.21281 * 120.00311 * 115.27526 * 13 10 9 15 15 N 1.34780 * 119.99964 * 295.00380 * 13 10 9 16 16 C 1.47065 * 136.05926 * 359.62375 * 15 13 10 17 17 C 1.53241 * 88.08660 * 207.20965 * 16 15 13 18 18 O 1.42893 * 114.19737 * 87.72417 * 17 16 15 19 19 C 1.50697 * 114.32480 * 220.47223 * 17 16 15 20 20 H 1.07994 * 120.00096 * 99.23175 * 19 17 16 21 21 C 1.37875 * 119.99944 * 279.23464 * 19 17 16 22 22 N 1.31521 * 120.00199 * 10.18602 * 21 19 17 23 23 Si 1.86800 * 120.00178 * 190.18896 * 21 19 17 24 24 H 1.48496 * 109.47044 * 84.99524 * 23 21 19 25 25 H 1.48508 * 109.47035 * 204.99350 * 23 21 19 26 26 H 1.48498 * 109.46947 * 324.99312 * 23 21 19 27 27 C 1.47073 * 136.05787 * 180.02562 * 15 13 10 28 28 H 1.09001 * 109.47608 * 299.99614 * 1 2 3 29 29 H 1.08997 * 109.47516 * 60.00457 * 1 2 3 30 30 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46819 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47339 * 299.99731 * 3 2 1 33 33 H 1.08997 * 109.47118 * 60.00211 * 3 2 1 34 34 H 1.09005 * 109.47223 * 299.99331 * 4 2 1 35 35 H 1.08997 * 109.47714 * 59.99724 * 4 2 1 36 36 H 1.08999 * 109.47262 * 179.97438 * 4 2 1 37 37 H 0.97000 * 119.99903 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.46876 * 59.99958 * 9 8 6 39 39 H 1.09003 * 109.46573 * 300.00028 * 9 8 6 40 40 H 0.96709 * 113.99813 * 300.00072 * 12 10 9 41 41 H 1.09004 * 113.46539 * 321.94317 * 16 15 13 42 42 H 1.08998 * 113.46888 * 92.37205 * 16 15 13 43 43 H 0.96703 * 113.99772 * 90.31495 * 18 17 16 44 44 H 0.96998 * 120.00277 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.46412 * 267.62060 * 27 15 13 46 46 H 1.09004 * 113.46610 * 38.00006 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9722 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0673 -2.6653 2.4171 9 6 1.6733 -4.0665 2.5837 10 6 2.2735 -4.6145 3.8800 11 1 1.9074 -4.0312 4.7249 12 8 3.6984 -4.5241 3.8206 13 6 1.8678 -6.0555 4.0516 14 8 2.7089 -6.9290 4.0305 15 7 0.5707 -6.3733 4.2340 16 6 -0.6973 -5.6345 4.3294 17 6 -1.2395 -6.7783 5.1930 18 8 -0.9693 -6.6370 6.5891 19 6 -2.6683 -7.1555 4.8979 20 1 -2.8832 -8.0081 4.2709 21 6 -3.7012 -6.4119 5.4283 22 7 -3.4492 -5.2653 6.0212 23 14 -5.4585 -7.0331 5.3048 24 1 -5.7363 -7.9598 6.4314 25 1 -6.3957 -5.8827 5.3675 26 1 -5.6407 -7.7504 4.0174 27 6 -0.1986 -7.6110 4.4322 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 2.6268 -2.2364 3.0833 38 1 2.0399 -4.6498 1.7390 39 1 0.5864 -4.1354 2.6285 40 1 4.0940 -5.0204 3.0909 41 1 -0.6100 -4.6903 4.8671 42 1 -1.2118 -5.5300 3.3742 43 1 -1.6576 -6.1643 7.0769 44 1 -4.1758 -4.7424 6.3947 45 1 -0.5789 -8.0389 3.5046 46 1 0.3122 -8.3443 5.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362674144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:14 Heat of formation + Delta-G solvation = -203.129191 kcal Electronic energy + Delta-G solvation = -29473.171347 eV Core-core repulsion = 25170.649218 eV Total energy + Delta-G solvation = -4302.522128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92758 -41.49765 -39.79418 -38.58921 -37.49763 -36.00146 -35.65589 -34.77925 -34.21606 -31.73233 -29.68218 -28.34695 -28.27392 -27.27007 -26.84301 -25.24847 -23.09701 -22.13107 -21.21141 -20.30090 -19.45151 -19.24011 -18.53012 -18.07164 -17.60367 -17.32683 -17.10290 -16.79438 -16.22167 -16.09049 -15.93168 -15.88850 -15.33140 -15.28257 -14.92053 -14.49141 -14.38866 -14.33370 -13.99185 -13.75399 -13.57573 -13.33181 -13.11777 -13.04174 -12.89474 -12.84985 -12.81237 -12.70179 -12.46291 -12.33455 -12.25305 -12.17718 -12.02337 -11.38975 -11.28280 -11.15220 -10.86753 -10.68484 -10.38446 -10.20619 -9.66931 -8.27673 -6.42172 0.95931 1.44541 1.46920 1.51714 1.58297 1.70905 1.82199 2.41209 2.92052 2.95316 3.20065 3.30899 3.43624 3.68066 3.76672 3.79299 3.82266 3.96435 4.09475 4.37722 4.41537 4.49256 4.58033 4.61496 4.63351 4.75604 4.77345 4.78633 4.85190 4.86573 4.90170 4.95147 4.99835 5.19272 5.22503 5.30289 5.35896 5.54545 5.71384 5.89336 6.30532 6.38609 6.62772 6.75427 6.96045 7.27896 7.29391 7.31351 8.77835 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003238 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.937925 B = 8645.353935 C =10439.529694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.591 6.591 8 N -0.692 5.692 9 C 0.125 3.875 10 C 0.108 3.892 11 H 0.142 0.858 12 O -0.535 6.535 13 C 0.508 3.492 14 O -0.582 6.582 15 N -0.630 5.630 16 C 0.093 3.907 17 C 0.220 3.780 18 O -0.577 6.577 19 C -0.558 4.558 20 H 0.072 0.928 21 C 0.039 3.961 22 N -0.905 5.905 23 Si 0.960 3.040 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.107 3.893 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.421 0.579 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.394 0.606 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.384 0.616 44 H 0.274 0.726 45 H 0.105 0.895 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 13.300 -10.606 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.482 6.482 8 N -0.353 5.353 9 C 0.000 4.000 10 C 0.045 3.955 11 H 0.159 0.841 12 O -0.341 6.341 13 C 0.297 3.703 14 O -0.463 6.463 15 N -0.363 5.363 16 C -0.030 4.030 17 C 0.179 3.821 18 O -0.386 6.386 19 C -0.596 4.596 20 H 0.090 0.910 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.258 0.742 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.235 0.765 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.831 12.929 -10.668 18.946 hybrid contribution -1.289 -0.429 0.095 1.362 sum 7.542 12.500 -10.573 18.026 Atomic orbital electron populations 1.22498 0.94245 1.03602 1.03638 1.22451 0.94425 0.92877 0.81479 1.21886 1.02535 0.90395 1.04365 1.22474 1.01746 1.02138 0.97333 1.86314 1.71474 1.22639 1.47568 1.18165 0.78617 0.81010 0.82099 1.90921 1.41978 1.71081 1.44245 1.44350 1.55473 1.11601 1.23924 1.21710 1.00881 0.80412 0.96958 1.21759 0.83262 0.91028 0.99483 0.84106 1.86567 1.16326 1.74114 1.57072 1.21213 0.80378 0.92341 0.76372 1.90661 1.50290 1.51224 1.54172 1.49865 1.04999 1.13105 1.68373 1.23914 0.79482 0.98718 1.00837 1.19696 0.91875 0.91065 0.79482 1.86080 1.50864 1.80350 1.21273 1.21537 0.90183 1.14773 1.33113 0.90958 1.25658 1.02951 0.93943 0.93780 1.69809 1.34645 1.11890 1.37995 0.85540 0.79252 0.77917 0.78755 1.20301 1.20943 1.19354 1.23359 0.89676 0.88967 0.99570 0.92053 0.88946 0.92238 0.90961 0.87881 0.91248 0.92168 0.89000 0.91685 0.74186 0.90302 0.90228 0.75495 0.91413 0.89141 0.76511 0.91685 0.87699 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 2 C 0.12 2.36 1.13 -10.80 -0.01 2.34 16 3 C -0.13 -1.63 8.85 71.98 0.64 -1.00 16 4 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 5 O -0.37 -8.57 9.94 -55.42 -0.55 -9.12 16 6 C 0.65 17.48 8.06 129.79 1.05 18.53 16 7 O -0.59 -19.07 11.88 19.81 0.24 -18.84 16 8 N -0.69 -16.15 5.45 -590.85 -3.22 -19.37 16 9 C 0.12 3.20 5.26 86.38 0.45 3.65 16 10 C 0.11 2.94 3.31 29.84 0.10 3.04 16 11 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 12 O -0.53 -13.49 12.74 -130.00 -1.66 -15.15 16 13 C 0.51 18.58 7.42 87.65 0.65 19.23 16 14 O -0.58 -24.79 17.10 15.95 0.27 -24.51 16 15 N -0.63 -24.41 3.67 -859.28 -3.15 -27.56 16 16 C 0.09 3.71 6.54 83.09 0.54 4.26 16 17 C 0.22 9.96 1.40 -11.30 -0.02 9.94 16 18 O -0.58 -28.02 13.56 -148.98 -2.02 -30.04 16 19 C -0.56 -26.61 8.65 25.60 0.22 -26.39 16 20 H 0.07 3.38 7.83 -2.91 -0.02 3.35 16 21 C 0.04 1.85 5.21 84.65 0.44 2.29 16 22 N -0.91 -43.71 11.81 21.45 0.25 -43.46 16 23 Si 0.96 38.34 29.55 68.60 2.03 40.37 16 24 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 27 C 0.11 4.40 8.03 83.17 0.67 5.07 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 8.16 8.46 -92.71 -0.78 7.38 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.30 6.85 -2.39 -0.02 2.28 16 40 H 0.39 8.32 8.80 -74.05 -0.65 7.67 16 41 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.09 3.53 8.10 -2.39 -0.02 3.51 16 43 H 0.38 18.75 7.09 -74.06 -0.53 18.22 16 44 H 0.27 12.65 8.31 -92.71 -0.77 11.87 16 45 H 0.11 3.93 8.10 -2.39 -0.02 3.91 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -61.23 382.48 -2.80 -64.03 By element: Atomic # 1 Polarization: 49.40 SS G_CDS: -0.93 Total: 48.47 kcal Atomic # 6 Polarization: 29.24 SS G_CDS: 5.94 Total: 35.18 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -6.12 Total: -90.39 kcal Atomic # 8 Polarization: -93.94 SS G_CDS: -3.72 Total: -97.66 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -61.23 -2.80 -64.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362674144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.095 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds