Wall clock time and date at job start Tue Mar 31 2020 04:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00401 * 2 1 4 4 H 1.48502 * 109.46953 * 264.53440 * 3 2 1 5 5 H 1.48506 * 109.46915 * 24.52994 * 3 2 1 6 6 H 1.48496 * 109.47715 * 144.53182 * 3 2 1 7 7 C 1.38812 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00073 * 337.61990 * 7 2 1 9 9 N 1.36936 * 120.00349 * 157.62288 * 7 2 1 10 10 C 1.47428 * 125.64206 * 341.47498 * 9 7 2 11 11 C 1.54906 * 104.82861 * 204.16212 * 10 9 7 12 12 C 1.55165 * 101.58502 * 322.99090 * 11 10 9 13 13 H 1.09005 * 110.86671 * 277.07110 * 12 11 10 14 14 C 1.52996 * 110.72085 * 153.86545 * 12 11 10 15 15 N 1.46504 * 109.46718 * 180.02562 * 14 12 11 16 16 C 1.34781 * 120.00017 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99438 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00199 * 180.02562 * 16 15 14 19 19 C 1.50698 * 109.46852 * 180.02562 * 18 16 15 20 20 N 1.32613 * 125.18908 * 269.99556 * 19 18 16 21 21 C 1.32820 * 109.75933 * 180.02562 * 20 19 18 22 22 N 1.33822 * 132.50217 * 180.02562 * 21 20 19 23 23 C 1.31356 * 120.86256 * 179.97438 * 22 21 20 24 24 C 1.40041 * 120.31280 * 0.02562 * 23 22 21 25 25 C 1.35779 * 119.24083 * 359.97438 * 24 23 22 26 26 N 1.35982 * 119.02062 * 0.02562 * 25 24 23 27 27 N 1.31187 * 125.18476 * 90.00528 * 19 18 16 28 28 C 1.47011 * 125.65167 * 161.51052 * 9 7 2 29 29 H 0.96996 * 119.99366 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36615 * 322.99989 * 10 9 7 31 31 H 1.09004 * 110.36893 * 85.21616 * 10 9 7 32 32 H 1.09003 * 111.00599 * 204.91488 * 11 10 9 33 33 H 1.08999 * 111.00958 * 81.06360 * 11 10 9 34 34 H 1.08997 * 109.47337 * 60.02574 * 14 12 11 35 35 H 1.09000 * 109.47207 * 300.01907 * 14 12 11 36 36 H 0.96994 * 119.99990 * 0.02562 * 15 14 12 37 37 H 1.08997 * 109.46958 * 60.00280 * 18 16 15 38 38 H 1.09001 * 109.47443 * 300.00498 * 18 16 15 39 39 H 1.08002 * 119.84075 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.37782 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.49280 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.88124 * 59.49053 * 28 9 7 43 43 H 1.09001 * 110.01684 * 298.39728 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6133 1.9796 -1.3937 5 1 1.3948 2.6832 0.5813 6 1 3.4853 1.4763 0.8123 7 6 2.0103 -1.2022 0.0005 8 1 1.5312 -2.1021 0.3571 9 7 3.3023 -1.2472 -0.4509 10 6 3.9504 -0.2334 -1.3028 11 6 5.0950 -0.9916 -2.0203 12 6 5.5798 -1.9534 -0.9033 13 1 6.2743 -1.4492 -0.2312 14 6 6.2242 -3.2029 -1.5068 15 7 6.6706 -4.0905 -0.4302 16 6 7.2712 -5.2601 -0.7266 17 8 7.4425 -5.5775 -1.8845 18 6 7.7299 -6.1735 0.3808 19 6 8.3648 -7.4042 -0.2137 20 7 7.7220 -8.5222 -0.5228 21 6 8.5760 -9.4069 -1.0249 22 7 8.4213 -10.6567 -1.4775 23 6 9.4462 -11.3396 -1.9345 24 6 10.7242 -10.7674 -1.9549 25 6 10.8908 -9.4998 -1.4977 26 7 9.8099 -8.8194 -1.0311 27 7 9.6376 -7.5329 -0.5041 28 6 4.2725 -2.3145 -0.1669 29 1 -0.4849 0.8401 -0.0004 30 1 3.2411 0.1598 -2.0310 31 1 4.3530 0.5745 -0.6918 32 1 5.8895 -0.3078 -2.3191 33 1 4.7176 -1.5481 -2.8782 34 1 7.0798 -2.9121 -2.1163 35 1 5.4955 -3.7234 -2.1282 36 1 6.5333 -3.8368 0.4958 37 1 6.8741 -6.4639 0.9901 38 1 8.4587 -5.6533 1.0025 39 1 9.3026 -12.3473 -2.2954 40 1 11.5675 -11.3277 -2.3308 41 1 11.8674 -9.0387 -1.5046 42 1 3.8922 -3.2682 -0.5331 43 1 4.4561 -2.3761 0.9057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493259414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:24 Heat of formation + Delta-G solvation = 133.828494 kcal Electronic energy + Delta-G solvation = -26681.662655 eV Core-core repulsion = 22765.646530 eV Total energy + Delta-G solvation = -3916.016125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.28674 -39.98643 -39.08457 -37.96850 -35.01426 -34.79102 -32.92911 -32.46644 -31.10995 -30.67067 -29.69414 -28.49004 -25.91831 -25.10874 -24.24582 -23.36118 -21.83739 -21.13251 -20.27326 -19.73073 -18.84069 -18.52102 -17.53119 -16.86710 -16.81650 -16.56958 -16.13804 -15.65954 -15.25353 -15.04937 -14.84421 -13.98237 -13.88358 -13.80530 -13.65946 -13.34475 -13.06881 -13.04327 -12.83299 -12.47556 -12.38460 -12.17691 -12.04637 -11.57740 -11.27201 -11.01160 -10.60224 -10.54044 -10.52209 -10.43276 -10.24946 -10.04728 -9.99813 -9.79368 -9.42482 -9.21526 -9.08175 -8.67122 -7.03190 -5.93144 -3.23502 -0.04387 0.27551 1.45886 2.06272 2.52770 2.77728 2.98315 3.21385 3.35299 3.48189 3.49866 3.50587 3.78433 4.04420 4.31883 4.51627 4.55809 4.62772 4.78544 4.86283 4.95607 5.01089 5.03191 5.10999 5.22919 5.33715 5.48078 5.62236 5.69573 5.78232 5.80704 5.83332 5.87366 6.03705 6.11343 6.28069 6.36226 6.51133 6.62356 6.73420 6.76745 6.98867 7.40406 7.55545 7.72942 8.11357 8.32930 8.85078 9.70330 10.19175 11.23021 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.001928 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.291600 B =14520.392696 C =14879.586118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.121 4.121 12 C -0.116 4.116 13 H 0.081 0.919 14 C 0.134 3.866 15 N -0.722 5.722 16 C 0.522 3.478 17 O -0.534 6.534 18 C -0.055 4.055 19 C 0.302 3.698 20 N -0.509 5.509 21 C 0.442 3.558 22 N -0.452 5.452 23 C 0.205 3.795 24 C -0.226 4.226 25 C 0.173 3.827 26 N -0.326 5.326 27 N -0.322 5.322 28 C 0.140 3.860 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.035 0.965 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.197 -20.246 -1.765 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.109 0.891 9 N -0.336 5.336 10 C -0.015 4.015 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.373 5.373 16 C 0.306 3.694 17 O -0.411 6.411 18 C -0.097 4.097 19 C 0.020 3.980 20 N -0.240 5.240 21 C 0.082 3.918 22 N -0.166 5.166 23 C 0.018 3.982 24 C -0.251 4.251 25 C 0.035 3.965 26 N -0.105 5.105 27 N -0.154 5.154 28 C 0.014 3.986 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.208 0.792 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.053 0.947 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 26.181 -19.921 -2.217 32.973 hybrid contribution 1.278 1.237 0.354 1.814 sum 27.459 -18.683 -1.863 33.265 Atomic orbital electron populations 1.69854 1.05542 1.26553 1.53259 1.25007 0.95174 0.97428 1.00193 0.86948 0.79094 0.84728 0.77725 1.21233 1.23078 1.20355 1.18644 0.84397 0.95458 1.38413 0.89074 1.44764 1.09877 1.22225 1.56717 1.21962 0.93714 0.92514 0.93310 1.22718 0.98269 0.97772 0.97275 1.22476 0.97625 0.94985 0.98484 0.90068 1.21428 0.98850 0.89479 0.89198 1.45922 1.60548 1.19833 1.11040 1.19978 0.78031 0.81663 0.89723 1.90751 1.55513 1.73790 1.21000 1.20065 1.02851 0.89165 0.97651 1.23498 0.87369 0.93811 0.93306 1.70699 1.29115 1.00797 1.23427 1.22728 0.80890 0.91777 0.96410 1.68025 1.32948 1.02151 1.13505 1.23609 0.86898 0.99502 0.88183 1.21964 1.01113 0.95015 1.07022 1.22175 0.92083 0.91438 0.90765 1.48774 1.09739 1.12272 1.39741 1.78520 1.18700 0.92790 1.25366 1.21399 0.87661 0.92894 0.96627 0.92729 0.92220 0.95699 0.91379 0.90785 0.91488 0.90908 0.76084 0.84990 0.85657 0.79215 0.80771 0.80035 0.94654 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.25 13.97 55.49 0.78 -27.48 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 3 Si 0.88 22.66 24.27 -169.99 -4.13 18.54 16 4 H -0.29 -7.03 6.49 56.52 0.37 -6.66 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.28 -6.98 6.66 56.52 0.38 -6.60 16 7 C -0.24 -6.91 10.57 -15.06 -0.16 -7.07 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.61 -14.64 3.21 -170.08 -0.55 -15.18 16 10 C 0.11 2.36 4.70 -2.53 -0.01 2.35 16 11 C -0.12 -1.96 6.53 -24.58 -0.16 -2.12 16 12 C -0.12 -1.72 3.02 -88.78 -0.27 -1.98 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.13 1.80 4.99 -4.04 -0.02 1.78 16 15 N -0.72 -8.39 5.40 -60.30 -0.33 -8.71 16 16 C 0.52 6.93 7.82 -10.99 -0.09 6.84 16 17 O -0.53 -9.56 16.03 5.56 0.09 -9.47 16 18 C -0.05 -0.56 6.33 -29.04 -0.18 -0.74 16 19 C 0.30 4.13 6.59 -157.01 -1.03 3.09 16 20 N -0.51 -7.91 11.25 -11.80 -0.13 -8.04 16 21 C 0.44 5.96 8.99 -323.15 -2.91 3.05 16 22 N -0.45 -4.90 10.48 -13.82 -0.14 -5.04 16 23 C 0.20 1.00 11.27 -17.08 -0.19 0.81 16 24 C -0.23 -0.64 10.06 -39.79 -0.40 -1.05 16 25 C 0.17 1.00 11.32 -16.59 -0.19 0.81 16 26 N -0.33 -3.70 3.91 -13.84 -0.05 -3.75 16 27 N -0.32 -4.27 12.78 32.39 0.41 -3.86 16 28 C 0.14 2.63 6.52 -3.07 -0.02 2.61 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.06 1.38 6.64 -51.93 -0.34 1.04 16 31 H 0.03 0.56 5.57 -51.93 -0.29 0.27 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.40 3.64 8.33 -40.82 -0.34 3.30 16 37 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.19 0.07 8.06 -52.49 -0.42 -0.35 16 40 H 0.17 -0.29 8.06 -52.49 -0.42 -0.71 16 41 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -41.60 359.49 -9.99 -51.60 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.64 Total: -2.90 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -5.72 Total: 8.89 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.01 Total: -72.07 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.13 Total: 18.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -41.60 -9.99 -51.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493259414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.424 kcal (2) G-P(sol) polarization free energy of solvation -41.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds