Wall clock time and date at job start Tue Mar 31 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00401 * 2 1 4 4 H 1.48502 * 109.46953 * 264.53440 * 3 2 1 5 5 H 1.48506 * 109.46915 * 24.52994 * 3 2 1 6 6 H 1.48496 * 109.47715 * 144.53182 * 3 2 1 7 7 C 1.38812 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00073 * 337.61990 * 7 2 1 9 9 N 1.36936 * 120.00349 * 157.62288 * 7 2 1 10 10 C 1.47428 * 125.64206 * 341.47498 * 9 7 2 11 11 C 1.54906 * 104.82861 * 204.16212 * 10 9 7 12 12 C 1.55165 * 101.58502 * 322.99090 * 11 10 9 13 13 H 1.09005 * 110.86671 * 277.07110 * 12 11 10 14 14 C 1.52996 * 110.72085 * 153.86545 * 12 11 10 15 15 N 1.46504 * 109.46718 * 180.02562 * 14 12 11 16 16 C 1.34781 * 120.00017 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99438 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00199 * 180.02562 * 16 15 14 19 19 C 1.50698 * 109.46852 * 180.02562 * 18 16 15 20 20 N 1.32613 * 125.18908 * 269.99556 * 19 18 16 21 21 C 1.32820 * 109.75933 * 180.02562 * 20 19 18 22 22 N 1.33822 * 132.50217 * 180.02562 * 21 20 19 23 23 C 1.31356 * 120.86256 * 179.97438 * 22 21 20 24 24 C 1.40041 * 120.31280 * 0.02562 * 23 22 21 25 25 C 1.35779 * 119.24083 * 359.97438 * 24 23 22 26 26 N 1.35982 * 119.02062 * 0.02562 * 25 24 23 27 27 N 1.31187 * 125.18476 * 90.00528 * 19 18 16 28 28 C 1.47011 * 125.65167 * 161.51052 * 9 7 2 29 29 H 0.96996 * 119.99366 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36615 * 322.99989 * 10 9 7 31 31 H 1.09004 * 110.36893 * 85.21616 * 10 9 7 32 32 H 1.09003 * 111.00599 * 204.91488 * 11 10 9 33 33 H 1.08999 * 111.00958 * 81.06360 * 11 10 9 34 34 H 1.08997 * 109.47337 * 60.02574 * 14 12 11 35 35 H 1.09000 * 109.47207 * 300.01907 * 14 12 11 36 36 H 0.96994 * 119.99990 * 0.02562 * 15 14 12 37 37 H 1.08997 * 109.46958 * 60.00280 * 18 16 15 38 38 H 1.09001 * 109.47443 * 300.00498 * 18 16 15 39 39 H 1.08002 * 119.84075 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.37782 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.49280 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.88124 * 59.49053 * 28 9 7 43 43 H 1.09001 * 110.01684 * 298.39728 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6133 1.9796 -1.3937 5 1 1.3948 2.6832 0.5813 6 1 3.4853 1.4763 0.8123 7 6 2.0103 -1.2022 0.0005 8 1 1.5312 -2.1021 0.3571 9 7 3.3023 -1.2472 -0.4509 10 6 3.9504 -0.2334 -1.3028 11 6 5.0950 -0.9916 -2.0203 12 6 5.5798 -1.9534 -0.9033 13 1 6.2743 -1.4492 -0.2312 14 6 6.2242 -3.2029 -1.5068 15 7 6.6706 -4.0905 -0.4302 16 6 7.2712 -5.2601 -0.7266 17 8 7.4425 -5.5775 -1.8845 18 6 7.7299 -6.1735 0.3808 19 6 8.3648 -7.4042 -0.2137 20 7 7.7220 -8.5222 -0.5228 21 6 8.5760 -9.4069 -1.0249 22 7 8.4213 -10.6567 -1.4775 23 6 9.4462 -11.3396 -1.9345 24 6 10.7242 -10.7674 -1.9549 25 6 10.8908 -9.4998 -1.4977 26 7 9.8099 -8.8194 -1.0311 27 7 9.6376 -7.5329 -0.5041 28 6 4.2725 -2.3145 -0.1669 29 1 -0.4849 0.8401 -0.0004 30 1 3.2411 0.1598 -2.0310 31 1 4.3530 0.5745 -0.6918 32 1 5.8895 -0.3078 -2.3191 33 1 4.7176 -1.5481 -2.8782 34 1 7.0798 -2.9121 -2.1163 35 1 5.4955 -3.7234 -2.1282 36 1 6.5333 -3.8368 0.4958 37 1 6.8741 -6.4639 0.9901 38 1 8.4587 -5.6533 1.0025 39 1 9.3026 -12.3473 -2.2954 40 1 11.5675 -11.3277 -2.3308 41 1 11.8674 -9.0387 -1.5046 42 1 3.8922 -3.2682 -0.5331 43 1 4.4561 -2.3761 0.9057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493259414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:23 Heat of formation + Delta-G solvation = 102.262896 kcal Electronic energy + Delta-G solvation = -26683.031442 eV Core-core repulsion = 22765.646530 eV Total energy + Delta-G solvation = -3917.384912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.99778 -40.98959 -39.85142 -39.37807 -36.13399 -35.63762 -34.47213 -33.55170 -32.23013 -31.81495 -30.75747 -29.83488 -27.46770 -25.74428 -25.16542 -24.63740 -22.90100 -22.57439 -21.42805 -21.02079 -19.48995 -19.16097 -18.94605 -18.33223 -17.54057 -17.40457 -17.19508 -17.01243 -16.60171 -16.25943 -15.53147 -15.40309 -15.12675 -14.90307 -14.69300 -14.41114 -14.16814 -13.93214 -13.76587 -13.75212 -13.70006 -13.26662 -13.13963 -13.09053 -12.97793 -12.68147 -12.24379 -12.03071 -11.81979 -11.62242 -11.37334 -11.36855 -11.14770 -11.01429 -10.80295 -10.64214 -10.13917 -9.91901 -9.04092 -8.17857 -5.44444 -0.50162 -0.34340 0.86097 1.30054 1.31582 1.39389 1.49109 1.53448 2.08223 2.33337 2.41808 2.42265 2.80020 3.03594 3.31276 3.37111 3.50709 3.67438 3.82882 3.86968 3.89750 3.97454 4.15679 4.30175 4.38776 4.39914 4.41633 4.54693 4.56574 4.77738 4.80898 4.84931 4.85400 5.01696 5.04164 5.07694 5.08961 5.20158 5.33989 5.37446 5.44305 5.68793 6.10258 6.38252 6.47701 6.77440 6.79337 7.16087 7.54698 8.11196 9.02168 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.001928 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.291600 B =14520.392696 C =14879.586118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.042 4.042 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.309 1.309 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.055 0.945 9 N -0.630 5.630 10 C 0.100 3.900 11 C -0.112 4.112 12 C -0.094 4.094 13 H 0.111 0.889 14 C 0.143 3.857 15 N -0.710 5.710 16 C 0.523 3.477 17 O -0.585 6.585 18 C -0.049 4.049 19 C 0.284 3.716 20 N -0.565 5.565 21 C 0.419 3.581 22 N -0.500 5.500 23 C 0.211 3.789 24 C -0.189 4.189 25 C 0.144 3.856 26 N -0.333 5.333 27 N -0.346 5.346 28 C 0.133 3.867 29 H 0.262 0.738 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.420 0.580 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.238 0.762 40 H 0.233 0.767 41 H 0.215 0.785 42 H 0.023 0.977 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.811 -21.012 -2.242 38.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.236 4.236 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.238 1.238 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.072 0.928 9 N -0.357 5.357 10 C -0.025 4.025 11 C -0.150 4.150 12 C -0.114 4.114 13 H 0.129 0.871 14 C 0.019 3.981 15 N -0.362 5.362 16 C 0.309 3.691 17 O -0.466 6.466 18 C -0.091 4.091 19 C 0.003 3.997 20 N -0.298 5.298 21 C 0.059 3.941 22 N -0.216 5.216 23 C 0.029 3.971 24 C -0.213 4.213 25 C 0.009 3.991 26 N -0.112 5.112 27 N -0.178 5.178 28 C 0.009 3.991 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.257 0.743 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.254 0.746 40 H 0.250 0.750 41 H 0.232 0.768 42 H 0.041 0.959 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 30.885 -20.726 -2.690 37.291 hybrid contribution -0.063 1.149 0.397 1.217 sum 30.822 -19.577 -2.293 36.585 Atomic orbital electron populations 1.69995 1.07356 1.27286 1.55918 1.25712 0.95876 1.01098 1.00957 0.85850 0.77820 0.79696 0.78536 1.19544 1.23782 1.18913 1.18577 0.86576 0.94234 1.37149 0.92756 1.44891 1.09377 1.24086 1.57343 1.22113 0.94779 0.92724 0.92860 1.22696 0.97296 0.98058 0.96970 1.22351 0.95789 0.95287 0.97924 0.87100 1.21218 0.98603 0.88871 0.89428 1.45791 1.59671 1.19210 1.11525 1.20463 0.77128 0.81846 0.89681 1.90724 1.57654 1.74903 1.23269 1.20199 1.04317 0.87886 0.96673 1.23946 0.87673 0.94330 0.93789 1.70560 1.31282 1.02219 1.25753 1.22905 0.81601 0.92609 0.97006 1.68114 1.35733 1.01740 1.16058 1.24650 0.86700 1.00629 0.85145 1.22683 1.01813 0.93576 1.03232 1.23168 0.92231 0.92586 0.91114 1.48862 1.10625 1.11727 1.40003 1.78318 1.18739 0.94330 1.26435 1.21592 0.88639 0.90931 0.97944 0.92916 0.94562 0.95207 0.87484 0.90974 0.90243 0.93233 0.74293 0.83272 0.82096 0.74581 0.75029 0.76823 0.95866 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.87 13.97 21.65 0.30 -61.56 16 2 C -0.04 -2.54 5.43 84.86 0.46 -2.08 16 3 Si 0.95 47.19 24.27 68.60 1.66 48.86 16 4 H -0.27 -12.54 6.49 99.48 0.65 -11.89 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.26 -12.36 6.66 99.48 0.66 -11.70 16 7 C -0.24 -13.91 10.57 84.03 0.89 -13.02 16 8 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.63 -30.13 3.21 -692.00 -2.22 -32.35 16 10 C 0.10 4.10 4.70 86.85 0.41 4.50 16 11 C -0.11 -3.27 6.53 31.99 0.21 -3.06 16 12 C -0.09 -2.50 3.02 -9.60 -0.03 -2.53 16 13 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 14 C 0.14 3.56 4.99 86.38 0.43 3.99 16 15 N -0.71 -15.31 5.40 -463.06 -2.50 -17.81 16 16 C 0.52 13.67 7.82 87.65 0.69 14.36 16 17 O -0.59 -21.39 16.03 -3.04 -0.05 -21.44 16 18 C -0.05 -0.98 6.33 29.10 0.18 -0.79 16 19 C 0.28 8.03 6.59 138.68 0.91 8.94 16 20 N -0.56 -18.54 11.25 -191.25 -2.15 -20.69 16 21 C 0.42 11.64 8.99 261.61 2.35 13.99 16 22 N -0.50 -10.69 10.48 -197.64 -2.07 -12.76 16 23 C 0.21 1.45 11.27 85.20 0.96 2.41 16 24 C -0.19 -0.28 10.06 22.14 0.22 -0.05 16 25 C 0.14 1.32 11.32 83.48 0.94 2.26 16 26 N -0.33 -7.49 3.91 -197.71 -0.77 -8.26 16 27 N -0.35 -9.30 12.78 -51.45 -0.66 -9.96 16 28 C 0.13 4.88 6.52 86.73 0.57 5.44 16 29 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.04 1.64 6.64 -2.39 -0.02 1.63 16 31 H 0.03 1.23 5.57 -2.39 -0.01 1.21 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.15 8.05 -2.39 -0.02 2.14 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 36 H 0.42 6.50 8.33 -92.71 -0.77 5.73 16 37 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.24 -0.92 8.06 -2.91 -0.02 -0.94 16 40 H 0.23 -2.39 8.06 -2.91 -0.02 -2.41 16 41 H 0.22 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.02 0.90 7.77 -2.39 -0.02 0.89 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -100.07 359.49 0.92 -99.15 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 0.18 Total: 2.47 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 9.20 Total: 34.37 kcal Atomic # 7 Polarization: -153.34 SS G_CDS: -10.07 Total: -163.40 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.66 Total: 48.86 kcal Total: -100.07 0.92 -99.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493259414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.413 kcal (2) G-P(sol) polarization free energy of solvation -100.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds