Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40195 * 126.58781 * 2 1 4 4 N 1.28672 * 109.50507 * 180.02562 * 3 2 1 5 5 C 1.35327 * 110.00018 * 359.97438 * 4 3 2 6 6 C 1.39902 * 133.26773 * 180.36582 * 5 4 3 7 7 C 1.39434 * 118.09944 * 180.12059 * 6 5 4 8 8 C 1.47718 * 120.35474 * 179.78959 * 7 6 5 9 9 O 1.21572 * 119.99616 * 359.71631 * 8 7 6 10 10 N 1.34773 * 120.00259 * 179.72035 * 8 7 6 11 11 C 1.46503 * 120.00358 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46725 * 59.99976 * 19 17 15 21 21 H 1.48498 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46920 * 300.00189 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 C 1.40117 * 119.29105 * 359.50529 * 7 6 5 27 27 N 1.31260 * 121.15181 * 0.23895 * 26 7 6 28 28 C 1.32711 * 121.80069 * 0.02562 * 27 26 7 29 29 H 1.09004 * 109.46840 * 270.00055 * 1 2 3 30 30 H 1.09008 * 109.47290 * 29.99885 * 1 2 3 31 31 H 1.08997 * 109.47422 * 149.99680 * 1 2 3 32 32 H 1.08001 * 120.95176 * 359.90052 * 6 5 4 33 33 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 35 35 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 36 36 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 37 37 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 38 38 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 39 39 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 40 40 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 41 41 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 42 42 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 43 43 H 1.08010 * 119.42123 * 180.25584 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1257 0.0000 4 7 3.5306 0.7477 -0.0005 5 6 3.5995 -0.6038 -0.0004 6 6 4.6656 -1.5096 0.0058 7 6 4.3698 -2.8722 0.0012 8 6 5.4571 -3.8722 0.0026 9 8 6.6171 -3.5086 0.0026 10 7 5.1630 -5.1874 0.0039 11 6 6.2413 -6.1792 0.0048 12 1 7.0787 -5.8049 0.5937 13 6 5.7318 -7.4861 0.6158 14 7 5.1812 -7.2207 1.9472 15 6 4.6621 -8.2469 2.6905 16 1 4.6589 -9.2521 2.2953 17 6 4.1400 -7.9954 3.9517 18 7 4.1433 -6.7704 4.4331 19 14 3.4325 -9.3955 4.9660 20 1 4.4873 -10.4117 5.2105 21 1 2.9436 -8.8678 6.2651 22 1 2.3047 -10.0201 4.2289 23 6 6.7016 -6.4332 -1.4320 24 6 8.2007 -6.3344 -1.7215 25 6 7.2510 -5.2417 -2.2190 26 6 3.0301 -3.2828 0.0013 27 7 2.0517 -2.4078 0.0010 28 6 2.2823 -1.1009 0.0000 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 5.6886 -1.1634 0.0102 33 1 4.2373 -5.4774 0.0043 34 1 6.5562 -8.1944 0.6981 35 1 4.9540 -7.9063 -0.0219 36 1 5.1837 -6.3179 2.3019 37 1 3.7782 -6.5945 5.3144 38 1 6.1308 -7.1804 -1.9834 39 1 8.8590 -6.0879 -0.8884 40 1 8.6160 -7.0163 -2.4636 41 1 7.0421 -5.2052 -3.2881 42 1 7.2842 -4.2767 -1.7133 43 1 2.7986 -4.3378 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498791626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = 138.546838 kcal Electronic energy + Delta-G solvation = -27671.079171 eV Core-core repulsion = 23755.267648 eV Total energy + Delta-G solvation = -3915.811522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.54073 -40.19725 -38.57467 -37.12318 -35.12064 -35.06718 -33.57997 -32.35312 -31.46672 -30.60611 -28.23250 -27.83453 -25.12308 -24.42909 -23.90128 -22.18662 -21.68202 -21.56905 -21.17100 -20.17018 -18.73761 -18.12934 -17.31690 -16.95913 -16.68221 -16.27454 -15.83313 -15.30650 -15.01980 -14.46919 -14.21534 -14.08191 -13.89951 -13.64563 -13.43417 -13.28382 -13.17533 -13.09033 -12.89150 -12.70458 -12.17937 -11.92111 -11.74037 -11.35360 -11.11547 -11.08766 -10.94325 -10.83439 -10.30631 -10.24134 -10.09028 -9.95721 -9.73260 -9.58550 -9.47643 -9.12413 -8.96073 -8.74635 -7.01961 -5.82649 -3.13041 0.01202 0.46409 1.53515 1.86499 2.75252 3.07384 3.40072 3.45136 3.46036 3.53597 3.57818 3.88628 4.02040 4.13790 4.34519 4.46259 4.51585 4.72432 4.78405 4.84829 5.00437 5.08842 5.13219 5.15753 5.23601 5.40193 5.50391 5.50972 5.64700 5.74027 5.82622 5.85347 5.88296 6.04661 6.12641 6.17687 6.32530 6.39638 6.47760 6.60605 6.82748 7.27384 7.56949 7.63603 7.67093 8.31389 8.34982 9.46962 10.01476 10.36799 11.39321 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.003729 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.824851 B = 7507.720532 C = 9912.792816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.386 5.386 3 N 0.006 4.994 4 N -0.197 5.197 5 C -0.076 4.076 6 C 0.081 3.919 7 C -0.200 4.200 8 C 0.573 3.427 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.169 3.831 12 H 0.091 0.909 13 C 0.147 3.853 14 N -0.732 5.732 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.185 4.185 26 C 0.219 3.781 27 N -0.486 5.486 28 C 0.288 3.712 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.403 0.597 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 9.781 -14.061 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.182 5.182 3 N 0.025 4.975 4 N -0.077 5.077 5 C -0.202 4.202 6 C 0.050 3.950 7 C -0.209 4.209 8 C 0.359 3.641 9 O -0.414 6.414 10 N -0.348 5.348 11 C 0.065 3.935 12 H 0.109 0.891 13 C 0.019 3.981 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.183 4.183 24 C -0.208 4.208 25 C -0.222 4.222 26 C 0.045 3.955 27 N -0.200 5.200 28 C 0.044 3.956 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.183 0.817 33 H 0.239 0.761 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.017 11.227 -13.979 18.373 hybrid contribution -0.413 -1.447 0.837 1.722 sum -4.429 9.780 -13.142 16.970 Atomic orbital electron populations 1.22090 0.71916 1.05391 1.04542 1.49958 1.08222 1.02442 1.57619 1.81737 0.94035 1.06339 1.15386 1.74850 1.11199 1.10092 1.11573 1.20356 0.94340 0.91347 1.14114 1.21045 0.99114 0.89535 0.85264 1.20801 0.95412 0.94288 1.10415 1.17600 0.87697 0.82351 0.76449 1.90716 1.19979 1.80327 1.50408 1.45849 1.10914 1.04790 1.73289 1.20872 0.90177 0.89080 0.93368 0.89053 1.20935 0.96605 0.92505 0.88017 1.42341 1.72544 1.09084 1.13734 1.19151 1.31971 0.89366 0.97095 0.91140 1.24732 1.01783 0.96423 0.97623 1.69647 1.51267 1.18365 1.18559 0.86282 0.78917 0.81404 0.79629 1.21245 1.21728 1.21225 1.22649 0.96878 1.01821 0.97002 1.22901 0.92151 1.02296 1.03420 1.23267 1.03831 0.95781 0.99356 1.23155 0.86436 0.99044 0.86852 1.66662 1.36859 0.98393 1.18065 1.19570 0.88898 0.89068 0.98019 0.89682 0.88435 0.88300 0.81737 0.76082 0.94497 0.95596 0.78015 0.93403 0.87760 0.88667 0.89194 0.89863 0.86504 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.54 59.85 0.69 1.38 16 2 N -0.39 -4.49 4.10 -67.18 -0.28 -4.76 16 3 N 0.01 0.08 13.72 60.35 0.83 0.91 16 4 N -0.20 -2.79 12.40 32.17 0.40 -2.39 16 5 C -0.08 -1.05 7.27 -84.74 -0.62 -1.66 16 6 C 0.08 1.06 9.75 -38.51 -0.38 0.68 16 7 C -0.20 -2.60 5.88 -104.87 -0.62 -3.22 16 8 C 0.57 8.38 7.11 -12.39 -0.09 8.29 16 9 O -0.54 -9.05 13.42 5.30 0.07 -8.97 16 10 N -0.70 -9.88 4.45 -54.79 -0.24 -10.12 16 11 C 0.17 2.59 2.43 -67.93 -0.17 2.42 16 12 H 0.09 1.60 7.33 -51.93 -0.38 1.22 16 13 C 0.15 2.65 5.80 -4.04 -0.02 2.62 16 14 N -0.73 -17.01 5.43 -59.91 -0.33 -17.34 16 15 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 16 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 19 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.16 -2.11 5.36 -90.62 -0.49 -2.59 16 24 C -0.17 -2.07 10.18 -26.69 -0.27 -2.34 16 25 C -0.19 -2.34 9.74 -26.69 -0.26 -2.60 16 26 C 0.22 2.65 10.69 -17.09 -0.18 2.46 16 27 N -0.49 -6.30 10.37 -12.03 -0.12 -6.43 16 28 C 0.29 3.84 8.05 -155.94 -1.26 2.58 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.17 1.97 7.71 -52.49 -0.40 1.57 16 33 H 0.40 5.20 6.64 -40.82 -0.27 4.93 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 9.59 7.33 -40.82 -0.30 9.29 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.23 8.11 -51.93 -0.42 0.81 16 39 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.12 1.70 5.02 -51.93 -0.26 1.44 16 43 H 0.18 1.78 6.39 -52.48 -0.34 1.44 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -32.45 366.83 -7.64 -40.09 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.30 Total: 12.15 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.90 Total: 1.09 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: 0.98 Total: -66.49 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.45 -7.64 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498791626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.637 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds