Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40195 * 126.58781 * 2 1 4 4 N 1.28672 * 109.50507 * 180.02562 * 3 2 1 5 5 C 1.35327 * 110.00018 * 359.97438 * 4 3 2 6 6 C 1.39902 * 133.26773 * 180.36582 * 5 4 3 7 7 C 1.39434 * 118.09944 * 180.12059 * 6 5 4 8 8 C 1.47718 * 120.35474 * 179.78959 * 7 6 5 9 9 O 1.21572 * 119.99616 * 359.71631 * 8 7 6 10 10 N 1.34773 * 120.00259 * 179.72035 * 8 7 6 11 11 C 1.46503 * 120.00358 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46725 * 59.99976 * 19 17 15 21 21 H 1.48498 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46920 * 300.00189 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 C 1.40117 * 119.29105 * 359.50529 * 7 6 5 27 27 N 1.31260 * 121.15181 * 0.23895 * 26 7 6 28 28 C 1.32711 * 121.80069 * 0.02562 * 27 26 7 29 29 H 1.09004 * 109.46840 * 270.00055 * 1 2 3 30 30 H 1.09008 * 109.47290 * 29.99885 * 1 2 3 31 31 H 1.08997 * 109.47422 * 149.99680 * 1 2 3 32 32 H 1.08001 * 120.95176 * 359.90052 * 6 5 4 33 33 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 35 35 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 36 36 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 37 37 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 38 38 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 39 39 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 40 40 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 41 41 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 42 42 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 43 43 H 1.08010 * 119.42123 * 180.25584 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1257 0.0000 4 7 3.5306 0.7477 -0.0005 5 6 3.5995 -0.6038 -0.0004 6 6 4.6656 -1.5096 0.0058 7 6 4.3698 -2.8722 0.0012 8 6 5.4571 -3.8722 0.0026 9 8 6.6171 -3.5086 0.0026 10 7 5.1630 -5.1874 0.0039 11 6 6.2413 -6.1792 0.0048 12 1 7.0787 -5.8049 0.5937 13 6 5.7318 -7.4861 0.6158 14 7 5.1812 -7.2207 1.9472 15 6 4.6621 -8.2469 2.6905 16 1 4.6589 -9.2521 2.2953 17 6 4.1400 -7.9954 3.9517 18 7 4.1433 -6.7704 4.4331 19 14 3.4325 -9.3955 4.9660 20 1 4.4873 -10.4117 5.2105 21 1 2.9436 -8.8678 6.2651 22 1 2.3047 -10.0201 4.2289 23 6 6.7016 -6.4332 -1.4320 24 6 8.2007 -6.3344 -1.7215 25 6 7.2510 -5.2417 -2.2190 26 6 3.0301 -3.2828 0.0013 27 7 2.0517 -2.4078 0.0010 28 6 2.2823 -1.1009 0.0000 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 5.6886 -1.1634 0.0102 33 1 4.2373 -5.4774 0.0043 34 1 6.5562 -8.1944 0.6981 35 1 4.9540 -7.9063 -0.0219 36 1 5.1837 -6.3179 2.3019 37 1 3.7782 -6.5945 5.3144 38 1 6.1308 -7.1804 -1.9834 39 1 8.8590 -6.0879 -0.8884 40 1 8.6160 -7.0163 -2.4636 41 1 7.0421 -5.2052 -3.2881 42 1 7.2842 -4.2767 -1.7133 43 1 2.7986 -4.3378 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498791626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = 116.362425 kcal Electronic energy + Delta-G solvation = -27672.041159 eV Core-core repulsion = 23755.267648 eV Total energy + Delta-G solvation = -3916.773510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.52891 -41.34936 -39.62021 -38.28528 -36.57179 -35.99678 -35.06275 -33.39051 -33.04498 -31.83987 -29.62863 -28.68524 -26.33210 -25.71654 -25.28220 -23.26383 -22.99582 -22.62137 -22.26715 -21.32562 -19.84941 -19.21960 -18.97450 -18.09872 -17.62762 -17.35968 -16.93022 -16.61594 -16.54198 -15.82255 -15.31569 -15.23455 -15.05299 -14.90398 -14.62208 -14.40668 -14.36200 -14.08676 -14.01155 -13.69693 -13.63252 -13.13740 -12.81721 -12.73027 -12.67776 -12.43392 -12.28625 -12.08576 -12.03497 -11.80698 -11.43418 -11.12670 -10.97539 -10.91416 -10.66792 -10.47457 -10.14845 -9.90605 -8.95907 -7.89885 -5.18631 -0.98513 -0.56909 0.67420 0.85206 1.52172 1.53857 1.59684 1.64298 1.94715 2.50148 2.57783 2.61048 2.95320 3.02519 3.11403 3.39710 3.45269 3.51744 3.63822 3.71851 4.00134 4.11682 4.19397 4.23500 4.29700 4.30479 4.40739 4.52507 4.59798 4.60926 4.69661 4.70393 4.89501 4.89950 4.97916 5.12003 5.18469 5.24474 5.36153 5.40990 5.55592 5.58974 6.27628 6.30508 6.51396 6.57782 7.16101 7.39094 8.12603 8.36069 9.32554 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.003729 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.824851 B = 7507.720532 C = 9912.792816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.377 5.377 3 N 0.002 4.998 4 N -0.218 5.218 5 C -0.089 4.089 6 C 0.081 3.919 7 C -0.202 4.202 8 C 0.575 3.425 9 O -0.561 6.561 10 N -0.694 5.694 11 C 0.180 3.820 12 H 0.064 0.936 13 C 0.149 3.851 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.967 5.967 19 Si 0.967 3.033 20 H -0.282 1.282 21 H -0.302 1.302 22 H -0.275 1.275 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.183 4.183 26 C 0.223 3.777 27 N -0.488 5.488 28 C 0.275 3.725 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.410 0.590 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.375 0.625 37 H 0.248 0.752 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 8.640 -15.498 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.173 5.173 3 N 0.020 4.980 4 N -0.097 5.097 5 C -0.215 4.215 6 C 0.050 3.950 7 C -0.211 4.211 8 C 0.362 3.638 9 O -0.442 6.442 10 N -0.344 5.344 11 C 0.075 3.925 12 H 0.082 0.918 13 C 0.022 3.978 14 N -0.386 5.386 15 C -0.372 4.372 16 H 0.097 0.903 17 C -0.262 4.262 18 N -0.617 5.617 19 Si 0.797 3.203 20 H -0.209 1.209 21 H -0.228 1.228 22 H -0.201 1.201 23 C -0.182 4.182 24 C -0.204 4.204 25 C -0.220 4.220 26 C 0.049 3.951 27 N -0.202 5.202 28 C 0.031 3.969 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.186 0.814 33 H 0.248 0.752 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.207 0.793 37 H 0.057 0.943 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.131 10.072 -15.463 19.153 hybrid contribution -0.074 -1.080 1.229 1.637 sum -5.205 8.992 -14.234 17.622 Atomic orbital electron populations 1.22541 0.69242 1.07227 1.05956 1.50341 1.09560 1.01464 1.55972 1.81655 0.94029 1.06975 1.15313 1.74830 1.11854 1.10369 1.12681 1.20509 0.94900 0.91422 1.14654 1.21115 0.99318 0.89609 0.84909 1.20648 0.95363 0.93808 1.11241 1.17756 0.87656 0.82570 0.75838 1.90710 1.21140 1.80708 1.51618 1.45767 1.11063 1.04545 1.73027 1.20619 0.89422 0.87852 0.94595 0.91789 1.21068 0.96789 0.93945 0.85959 1.42505 1.72598 1.07996 1.15463 1.19570 1.30203 0.90327 0.97147 0.90261 1.25451 1.03311 0.98374 0.99063 1.69805 1.53152 1.20253 1.18537 0.85306 0.78444 0.78833 0.77713 1.20854 1.22838 1.20050 1.22570 0.97690 1.02612 0.95359 1.22982 0.91562 1.02373 1.03462 1.23210 1.03968 0.94721 1.00098 1.23459 0.85858 0.99873 0.85914 1.66742 1.36835 0.98227 1.18393 1.19792 0.89175 0.89565 0.98319 0.88401 0.85950 0.87184 0.81421 0.75245 0.94467 0.93611 0.79277 0.94283 0.85806 0.89947 0.86851 0.87948 0.88649 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.54 127.77 1.47 2.51 16 2 N -0.38 -8.33 4.10 -366.45 -1.50 -9.83 16 3 N 0.00 0.04 13.72 37.02 0.51 0.55 16 4 N -0.22 -6.20 12.40 -52.15 -0.65 -6.85 16 5 C -0.09 -2.45 7.27 39.63 0.29 -2.16 16 6 C 0.08 2.14 9.75 22.96 0.22 2.36 16 7 C -0.20 -5.22 5.88 -20.03 -0.12 -5.33 16 8 C 0.57 16.85 7.11 86.75 0.62 17.47 16 9 O -0.56 -19.37 13.42 -3.94 -0.05 -19.42 16 10 N -0.69 -19.18 4.45 -445.53 -1.98 -21.17 16 11 C 0.18 5.36 2.43 44.99 0.11 5.47 16 12 H 0.06 2.28 7.33 -2.39 -0.02 2.27 16 13 C 0.15 5.14 5.80 86.38 0.50 5.64 16 14 N -0.74 -34.07 5.43 -343.45 -1.87 -35.94 16 15 C -0.24 -12.44 9.99 84.03 0.84 -11.60 16 16 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 18 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 19 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C -0.16 -3.87 5.36 -10.80 -0.06 -3.93 16 24 C -0.17 -3.75 10.18 30.62 0.31 -3.44 16 25 C -0.18 -4.33 9.74 30.62 0.30 -4.03 16 26 C 0.22 5.19 10.69 85.23 0.91 6.10 16 27 N -0.49 -12.15 10.37 -191.98 -1.99 -14.14 16 28 C 0.28 7.15 8.05 134.01 1.08 8.23 16 29 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.17 4.18 7.71 -2.91 -0.02 4.16 16 33 H 0.41 10.08 6.64 -92.70 -0.62 9.47 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.37 18.75 7.33 -92.71 -0.68 18.07 16 37 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.12 2.51 8.11 -2.39 -0.02 2.49 16 39 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 2.75 5.02 -2.39 -0.01 2.74 16 43 H 0.20 3.67 6.39 -2.91 -0.02 3.65 16 Total: -1.00 -69.30 366.83 1.51 -67.80 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.21 Total: 35.37 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.94 Total: 13.98 kcal Atomic # 7 Polarization: -136.75 SS G_CDS: -7.20 Total: -143.95 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.30 1.51 -67.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498791626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.159 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds