Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.46974 * 2 1 4 4 N 1.31666 * 119.01600 * 270.02007 * 3 2 1 5 5 C 1.33323 * 120.88719 * 179.97438 * 4 3 2 6 6 C 1.48422 * 120.50505 * 179.97438 * 5 4 3 7 7 N 1.34059 * 126.67931 * 180.02562 * 6 5 4 8 8 N 1.28984 * 107.27046 * 179.97438 * 7 6 5 9 9 N 1.28728 * 108.95044 * 0.02562 * 8 7 6 10 10 H 0.96998 * 125.34281 * 179.97438 * 9 8 7 11 11 N 1.28879 * 109.31769 * 359.75197 * 9 8 7 12 12 C 1.39230 * 118.98911 * 359.73129 * 5 4 3 13 13 C 1.39417 * 118.22307 * 0.53005 * 12 5 4 14 14 N 1.38586 * 120.49101 * 179.73865 * 13 12 5 15 15 C 1.46908 * 111.00055 * 179.72320 * 14 13 12 16 16 C 1.53232 * 109.33853 * 172.74904 * 15 14 13 17 17 N 1.47078 * 108.52568 * 53.83043 * 16 15 14 18 18 C 1.36943 * 120.88200 * 128.79038 * 17 16 15 19 19 H 1.07999 * 119.99657 * 206.58893 * 18 17 16 20 20 C 1.38807 * 119.99782 * 26.59378 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.00985 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.00832 * 20 18 17 23 23 H 1.48496 * 109.47164 * 60.00292 * 22 20 18 24 24 H 1.48510 * 109.47314 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47403 * 299.99703 * 22 20 18 26 26 C 1.47083 * 118.23591 * 308.81531 * 17 16 15 27 27 C 1.46902 * 111.00059 * 55.42404 * 14 13 12 28 28 N 1.31773 * 119.02188 * 90.00349 * 3 2 1 29 29 H 1.09009 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47339 * 299.99783 * 1 2 3 31 31 H 1.08994 * 109.47247 * 60.00264 * 1 2 3 32 32 H 1.08995 * 109.47005 * 239.99729 * 2 1 3 33 33 H 1.09007 * 109.46969 * 119.99573 * 2 1 3 34 34 H 1.07996 * 120.88764 * 180.29425 * 12 5 4 35 35 H 1.08998 * 109.49290 * 52.78452 * 15 14 13 36 36 H 1.09003 * 109.48885 * 292.70929 * 15 14 13 37 37 H 1.09004 * 109.62738 * 173.54336 * 16 15 14 38 38 H 1.09000 * 109.63272 * 294.11614 * 16 15 14 39 39 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.62724 * 170.89127 * 26 17 16 41 41 H 1.08992 * 109.62577 * 291.47416 * 26 17 16 42 42 H 1.09000 * 109.49125 * 67.29220 * 27 14 13 43 43 H 1.09000 * 109.49264 * 307.21557 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2447 2.0231 -1.1514 5 6 2.6884 3.2796 -1.1949 6 6 2.9256 3.9501 -2.4976 7 7 3.3680 5.2016 -2.6853 8 7 3.4376 5.3963 -3.9584 9 7 3.0592 4.3265 -4.5662 10 1 3.0189 4.2124 -5.5286 11 7 2.7468 3.4292 -3.6954 12 6 2.9209 3.9548 0.0002 13 6 2.6881 3.2774 1.1963 14 7 2.9093 3.9028 2.4131 15 6 2.5924 3.0048 3.5318 16 6 3.0189 3.6636 4.8479 17 7 2.4005 4.9958 4.9255 18 6 1.6952 5.3798 6.0347 19 1 0.9143 6.1208 5.9482 20 6 1.9840 4.8167 7.2701 21 7 3.1227 4.1829 7.4544 22 14 0.7566 4.9585 8.6710 23 1 -0.5229 4.3173 8.2748 24 1 1.2985 4.2783 9.8748 25 1 0.5181 6.3919 8.9771 26 6 2.5593 5.9045 3.7798 27 6 2.1508 5.1575 2.5058 28 7 2.2454 2.0235 1.1523 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2758 4.9748 0.0007 35 1 3.1279 2.0638 3.4058 36 1 1.5195 2.8133 3.5518 37 1 2.6837 3.0548 5.6876 38 1 4.1042 3.7617 4.8735 39 1 3.3247 3.7897 8.3179 40 1 1.9201 6.7772 3.9134 41 1 3.6003 6.2179 3.7027 42 1 1.0841 4.9360 2.5401 43 1 2.3661 5.7776 1.6356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590907784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = 216.086674 kcal Electronic energy + Delta-G solvation = -27896.416970 eV Core-core repulsion = 24016.260579 eV Total energy + Delta-G solvation = -3880.156391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.77099 -41.22368 -38.40160 -35.24576 -35.12566 -34.38416 -33.13315 -32.41494 -31.15723 -30.65626 -29.75721 -26.92693 -25.64501 -25.21442 -24.49224 -23.40685 -22.72631 -21.84316 -21.28569 -19.55693 -19.26891 -17.71712 -17.47854 -17.45915 -16.38584 -15.56355 -15.21888 -15.10728 -14.62970 -14.53204 -14.26950 -14.01022 -13.90211 -13.85557 -13.46139 -13.19616 -12.83682 -12.63700 -12.52886 -11.91266 -11.73823 -11.62234 -11.45365 -11.43828 -11.20020 -11.15352 -10.89261 -10.73714 -10.58693 -10.49190 -10.41912 -10.19294 -9.86075 -9.79685 -9.53985 -9.28609 -8.54994 -8.16711 -6.76856 -5.83341 -3.25553 0.36405 0.88826 1.04491 1.89708 2.09049 3.03465 3.36854 3.43092 3.43692 3.49906 3.68073 3.84906 4.23225 4.45783 4.49768 4.85158 4.91994 5.09856 5.16383 5.20664 5.22442 5.33041 5.33493 5.39683 5.59081 5.66038 5.75366 5.77579 5.91418 5.95710 5.99190 6.04466 6.11065 6.26507 6.27908 6.39999 6.51486 6.71662 6.86162 7.13118 7.33453 7.41968 7.58358 7.74821 7.82608 8.17250 8.36887 9.14467 9.77143 10.34274 11.25822 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.002982 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.347478 B = 9386.993797 C =10602.928210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.351 3.649 4 N -0.522 5.522 5 C 0.259 3.741 6 C 0.222 3.778 7 N -0.251 5.251 8 N -0.048 5.048 9 N -0.228 5.228 10 H 0.477 0.523 11 N -0.255 5.255 12 C -0.208 4.208 13 C 0.375 3.625 14 N -0.461 5.461 15 C 0.045 3.955 16 C 0.173 3.827 17 N -0.595 5.595 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.147 3.853 27 C 0.047 3.953 28 N -0.542 5.542 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.256 0.744 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.048 0.952 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -4.542 -22.193 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.082 3.918 4 N -0.240 5.240 5 C 0.114 3.886 6 C -0.059 4.059 7 N -0.125 5.125 8 N -0.043 5.043 9 N -0.075 5.075 10 H 0.331 0.669 11 N -0.108 5.108 12 C -0.237 4.237 13 C 0.133 3.867 14 N -0.177 5.177 15 C -0.082 4.082 16 C 0.047 3.953 17 N -0.318 5.318 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.020 3.980 27 C -0.080 4.080 28 N -0.263 5.263 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.478 -4.845 -22.252 22.821 hybrid contribution -0.900 0.336 0.276 1.000 sum -2.378 -4.509 -21.975 22.559 Atomic orbital electron populations 1.21681 0.93580 1.02373 1.02489 1.20344 0.96770 0.87804 1.04220 1.22940 0.90106 0.96672 0.82122 1.68026 1.16672 1.08619 1.30726 1.17661 0.94486 0.89577 0.86916 1.23007 1.01831 0.89492 0.91600 1.76140 1.16314 1.14256 1.05801 1.78961 1.14317 1.10659 1.00387 1.47872 1.40904 1.06174 1.12521 0.66860 1.75152 1.19067 1.17698 0.98861 1.22183 1.06818 1.03692 0.90959 1.20343 0.86105 0.88783 0.91433 1.58816 1.51651 1.07281 0.99961 1.22961 1.00063 0.94695 0.90473 1.21003 0.95790 0.86345 0.92148 1.44158 1.62038 1.10677 1.14972 1.19138 1.10897 1.23186 0.85371 0.91491 1.25031 0.96200 1.01127 0.97128 1.70009 1.20853 1.40212 1.23545 0.86348 0.80908 0.77807 0.81557 1.21016 1.21573 1.20856 1.21021 0.98749 0.92501 0.85724 1.22956 0.95252 0.88212 1.01582 1.68306 1.16343 1.11147 1.30518 0.91524 0.92138 0.92442 0.89200 0.88919 0.82421 0.90488 0.93430 0.88584 0.95320 0.93424 0.91557 0.95041 0.93406 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.57 6.36 -27.89 -0.18 -0.75 16 3 C 0.35 5.07 6.90 -157.32 -1.08 3.98 16 4 N -0.52 -7.66 10.29 -7.36 -0.08 -7.74 16 5 C 0.26 3.77 6.79 -82.66 -0.56 3.21 16 6 C 0.22 2.93 8.06 -156.29 -1.26 1.67 16 7 N -0.25 -3.22 12.30 32.15 0.40 -2.83 16 8 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 9 N -0.23 -1.76 7.90 60.35 0.48 -1.28 16 10 H 0.48 1.16 8.96 -340.36 -3.05 -1.90 16 11 N -0.26 -2.87 12.40 32.17 0.40 -2.47 16 12 C -0.21 -3.08 8.91 -38.77 -0.35 -3.43 16 13 C 0.38 6.23 6.41 -154.76 -0.99 5.23 16 14 N -0.46 -8.32 4.65 -172.76 -0.80 -9.12 16 15 C 0.05 0.90 4.84 -3.70 -0.02 0.88 16 16 C 0.17 4.08 5.42 -3.61 -0.02 4.06 16 17 N -0.60 -14.55 3.04 -172.02 -0.52 -15.07 16 18 C -0.26 -6.86 9.63 -15.06 -0.15 -7.00 16 19 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 21 N -0.90 -25.66 11.15 55.49 0.62 -25.04 16 22 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 2.95 6.69 -3.60 -0.02 2.93 16 27 C 0.05 0.80 5.42 -3.70 -0.02 0.78 16 28 N -0.54 -8.83 8.71 -10.02 -0.09 -8.92 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.16 2.15 7.10 -52.49 -0.37 1.78 16 35 H 0.08 1.46 7.67 -51.93 -0.40 1.06 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.10 2.50 6.12 -51.93 -0.32 2.18 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.10 6.68 -51.93 -0.35 0.75 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -32.05 359.04 -11.02 -43.08 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -8.25 Total: -3.14 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -4.37 Total: 10.54 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: 1.21 Total: -72.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -11.02 -43.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590907784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.166 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 227.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds