Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.80204 * 2 1 4 4 C 1.54935 * 110.73700 * 123.29241 * 2 1 3 5 5 N 1.48127 * 103.25603 * 155.71351 * 4 2 1 6 6 C 1.34773 * 127.03204 * 140.67100 * 5 4 2 7 7 O 1.21564 * 119.99740 * 176.33484 * 6 5 4 8 8 C 1.47818 * 120.00407 * 356.33734 * 6 5 4 9 9 C 1.41577 * 120.37465 * 214.14283 * 8 6 5 10 10 C 1.34820 * 120.11680 * 179.75574 * 9 8 6 11 11 N 1.36057 * 120.82465 * 0.52252 * 10 9 8 12 12 N 1.40253 * 133.73354 * 179.75495 * 11 10 9 13 13 N 1.28970 * 107.02014 * 179.97438 * 12 11 10 14 14 N 1.28539 * 110.84611 * 0.02562 * 13 12 11 15 15 C 1.32616 * 110.18623 * 359.97438 * 14 13 12 16 16 C 1.38456 * 120.37416 * 34.41790 * 8 6 5 17 17 C 1.47486 * 105.92924 * 320.70977 * 5 4 2 18 18 C 1.54007 * 107.08613 * 25.44606 * 17 5 4 19 19 H 1.09002 * 110.32434 * 239.70045 * 18 17 5 20 20 C 1.52998 * 110.32849 * 117.58544 * 18 17 5 21 21 N 1.46497 * 109.46865 * 66.45421 * 20 18 17 22 22 C 1.36942 * 120.00020 * 180.27697 * 21 20 18 23 23 H 1.08001 * 119.99408 * 359.72127 * 22 21 20 24 24 C 1.38814 * 120.00081 * 179.72295 * 22 21 20 25 25 N 1.31615 * 119.99924 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99820 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47193 * 59.99616 * 26 24 22 28 28 H 1.48493 * 109.47277 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47147 * 300.00279 * 26 24 22 30 30 H 1.09000 * 109.47202 * 183.28287 * 1 2 3 31 31 H 1.08999 * 109.47206 * 303.28839 * 1 2 3 32 32 H 1.09007 * 109.47065 * 63.28965 * 1 2 3 33 33 H 1.09000 * 110.66390 * 37.27301 * 4 2 1 34 34 H 1.08997 * 110.80864 * 274.22072 * 4 2 1 35 35 H 1.08001 * 119.94078 * 0.02562 * 9 8 6 36 36 H 1.07998 * 119.58451 * 180.25921 * 10 9 8 37 37 H 1.07999 * 120.51710 * 0.02562 * 16 8 6 38 38 H 1.09004 * 109.91270 * 266.07998 * 17 5 4 39 39 H 1.08998 * 110.07091 * 144.89397 * 17 5 4 40 40 H 1.09000 * 109.47211 * 306.45500 * 20 18 17 41 41 H 1.08998 * 109.47001 * 186.45437 * 20 18 17 42 42 H 0.97005 * 120.00376 * 359.97438 * 21 20 18 43 43 H 0.97001 * 119.99996 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0786 -0.7954 1.2112 5 7 3.4279 -1.2100 0.7622 6 6 4.5537 -1.2472 1.5022 7 8 5.5845 -1.6740 1.0194 8 6 4.5352 -0.7691 2.9008 9 6 5.6699 -0.1275 3.4531 10 6 5.6456 0.3109 4.7278 11 7 4.5419 0.1364 5.5041 12 7 4.2262 0.4696 6.8294 13 7 3.0221 0.0606 7.0449 14 7 2.5348 -0.4999 5.9958 15 6 3.4248 -0.4833 5.0128 16 6 3.4099 -0.9488 3.6872 17 6 3.2874 -1.5728 -0.6604 18 6 2.0775 -0.7936 -1.2088 19 1 1.3218 -1.4833 -1.5846 20 6 2.5200 0.1640 -2.3170 21 7 2.9886 -0.6076 -3.4707 22 6 3.4426 0.0399 -4.5887 23 1 3.4509 1.1194 -4.6215 24 6 3.8921 -0.6912 -5.6798 25 7 3.8824 -2.0067 -5.6395 26 14 4.5107 0.1921 -7.2051 27 1 5.6691 1.0488 -6.8454 28 1 4.9298 -0.8075 -8.2201 29 1 3.4243 1.0373 -7.7625 30 1 -0.3633 -1.0260 0.0588 31 1 -0.3633 0.5640 0.8590 32 1 -0.3633 0.4619 -0.9181 33 1 1.4558 -1.6668 1.4130 34 1 2.1456 -0.1594 2.0938 35 1 6.5550 0.0150 2.8509 36 1 6.5145 0.8030 5.1391 37 1 2.5347 -1.4400 3.2882 38 1 3.1126 -2.6446 -0.7547 39 1 4.1877 -1.2942 -1.2082 40 1 3.3286 0.7959 -1.9497 41 1 1.6778 0.7884 -2.6152 42 1 2.9815 -1.5772 -3.4411 43 1 4.1961 -2.5176 -6.4021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699962944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = 139.179708 kcal Electronic energy + Delta-G solvation = -27652.695323 eV Core-core repulsion = 23736.911245 eV Total energy + Delta-G solvation = -3915.784079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.83357 -40.73280 -39.01963 -37.92798 -34.99516 -34.42589 -33.04261 -32.56649 -31.56155 -31.06586 -29.13177 -27.01709 -26.14977 -25.41664 -24.79692 -23.35367 -23.24998 -21.43306 -20.55801 -19.80728 -19.16639 -17.87804 -17.56998 -17.31074 -17.08098 -16.48980 -15.91760 -15.44286 -15.18395 -14.78458 -14.40197 -14.21226 -13.77677 -13.70032 -13.52974 -13.38165 -13.00469 -12.93531 -12.84607 -12.84297 -12.47004 -12.19022 -12.08546 -11.82677 -11.55067 -11.50400 -11.14426 -10.92836 -10.73112 -10.66844 -10.59358 -10.43338 -10.29945 -10.06999 -9.71390 -9.15743 -8.94239 -8.86095 -6.98237 -5.80544 -3.09940 -0.42909 -0.08478 1.20656 1.64040 2.09329 2.45579 2.75002 3.15204 3.41719 3.46286 3.47031 3.47259 3.86054 3.96126 4.21652 4.36050 4.40879 4.52690 4.68144 4.72126 4.79353 4.94745 5.01431 5.12557 5.15258 5.20011 5.31841 5.33287 5.41017 5.52959 5.58425 5.65912 5.79596 5.82923 5.94844 6.02350 6.05906 6.11904 6.29797 6.31261 6.63247 6.75379 7.22648 7.65503 7.75173 7.88952 8.37919 9.49321 10.05041 10.39389 11.42068 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021055 B = 0.002565 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.517042 B =10914.701130 C =11660.969037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.086 3.914 5 N -0.605 5.605 6 C 0.572 3.428 7 O -0.514 6.514 8 C -0.048 4.048 9 C -0.092 4.092 10 C 0.107 3.893 11 N -0.295 5.295 12 N -0.110 5.110 13 N -0.008 5.008 14 N -0.316 5.316 15 C 0.239 3.761 16 C -0.066 4.066 17 C 0.112 3.888 18 C -0.103 4.103 19 H 0.090 0.910 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.178 0.822 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.019 0.981 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.996 3.454 21.006 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.037 4.037 5 N -0.338 5.338 6 C 0.359 3.641 7 O -0.389 6.389 8 C -0.059 4.059 9 C -0.115 4.115 10 C -0.020 4.020 11 N -0.076 5.076 12 N -0.093 5.093 13 N -0.001 5.001 14 N -0.177 5.177 15 C -0.015 4.015 16 C -0.090 4.090 17 C -0.009 4.009 18 C -0.123 4.123 19 H 0.109 0.891 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.198 0.802 36 H 0.207 0.793 37 H 0.195 0.805 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.861 3.634 22.204 22.576 hybrid contribution 0.849 0.060 -1.651 1.857 sum -1.012 3.694 20.553 20.907 Atomic orbital electron populations 1.21746 0.93519 1.02244 1.02389 1.22292 0.96350 0.99696 0.93483 0.89550 1.23120 0.82869 0.99278 0.98427 1.48739 1.07760 1.64439 1.12848 1.17341 0.82977 0.79755 0.84077 1.90904 1.30550 1.45886 1.71600 1.20438 0.93348 0.96916 0.95234 1.21166 0.99745 0.97207 0.93412 1.21650 0.89643 1.00606 0.90114 1.49057 1.12372 1.35079 1.11050 1.82829 1.11275 1.25505 0.89656 1.77885 1.01021 1.03795 1.17362 1.75255 1.24130 1.22633 0.95640 1.22716 0.84927 0.96886 0.96921 1.21139 1.00066 0.99963 0.87808 1.22311 1.00817 0.99297 0.78521 1.22425 0.96508 0.98047 0.95286 0.89146 1.20697 0.96211 0.92772 0.86833 1.42354 1.76949 1.05677 1.12709 1.19145 1.34698 0.91187 0.92342 0.91288 1.24736 1.02053 0.95467 0.98509 1.69637 1.53013 1.04142 1.31253 0.86272 0.78691 0.78319 0.82914 1.21253 1.21657 1.21265 0.92211 0.92525 0.91561 0.89731 0.89813 0.80203 0.79298 0.80523 0.91012 0.88601 0.96304 0.95920 0.78229 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.16 37.16 0.34 -0.82 16 2 C -0.10 -0.96 3.21 -88.75 -0.28 -1.25 16 3 H 0.09 0.88 7.86 -51.93 -0.41 0.48 16 4 C 0.09 0.71 4.77 -2.13 -0.01 0.69 16 5 N -0.61 -6.93 3.29 -170.88 -0.56 -7.50 16 6 C 0.57 6.87 7.60 -12.34 -0.09 6.78 16 7 O -0.51 -8.21 17.22 5.31 0.09 -8.11 16 8 C -0.05 -0.41 5.63 -104.63 -0.59 -1.00 16 9 C -0.09 -0.59 9.57 -39.52 -0.38 -0.97 16 10 C 0.11 0.63 11.19 -16.89 -0.19 0.44 16 11 N -0.30 -2.78 3.94 -12.43 -0.05 -2.83 16 12 N -0.11 -1.27 13.98 60.35 0.84 -0.42 16 13 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 14 N -0.32 -3.83 12.27 31.03 0.38 -3.44 16 15 C 0.24 2.39 8.02 -156.36 -1.25 1.13 16 16 C -0.07 -0.52 7.88 -38.65 -0.30 -0.83 16 17 C 0.11 1.59 6.30 -2.98 -0.02 1.57 16 18 C -0.10 -1.39 2.64 -89.24 -0.24 -1.62 16 19 H 0.09 1.22 7.85 -51.93 -0.41 0.81 16 20 C 0.16 2.95 5.34 -4.04 -0.02 2.93 16 21 N -0.73 -17.47 5.33 -59.91 -0.32 -17.78 16 22 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 26 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 34 H 0.08 0.56 5.57 -51.93 -0.29 0.27 16 35 H 0.18 0.91 8.02 -52.49 -0.42 0.48 16 36 H 0.19 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.18 1.10 5.74 -52.49 -0.30 0.80 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.72 7.52 -51.93 -0.39 1.33 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 9.59 7.51 -40.82 -0.31 9.29 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -34.31 361.14 -6.39 -40.70 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.44 Total: 3.16 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -3.29 Total: -0.10 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 1.82 Total: -58.11 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.31 -6.39 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699962944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.884 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds