Wall clock time and date at job start Tue Mar 31 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09000 * 110.88593 * 308.87975 * 11 10 9 13 13 C 1.55157 * 111.00340 * 72.80369 * 11 10 9 14 14 C 1.54323 * 102.94289 * 153.57745 * 13 11 10 15 15 N 1.47024 * 107.27227 * 337.80876 * 14 13 11 16 16 C 1.34774 * 125.65115 * 178.90796 * 15 14 13 17 17 O 1.21280 * 120.00020 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99778 * 0.03260 * 16 15 14 19 19 C 1.50708 * 109.46983 * 180.02562 * 18 16 15 20 20 N 1.32615 * 125.18788 * 269.69898 * 19 18 16 21 21 C 1.32823 * 109.75618 * 179.88250 * 20 19 18 22 22 N 1.33817 * 132.50612 * 180.10801 * 21 20 19 23 23 C 1.31344 * 120.86655 * 180.29367 * 22 21 20 24 24 C 1.40039 * 120.31657 * 359.97438 * 23 22 21 25 25 C 1.35785 * 119.23550 * 0.02562 * 24 23 22 26 26 N 1.35969 * 119.02382 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.18029 * 90.00105 * 19 18 16 28 28 C 1.47426 * 108.70092 * 358.93896 * 15 14 13 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 33 33 H 1.08998 * 110.71991 * 271.94019 * 13 11 10 34 34 H 1.08998 * 110.72043 * 35.21511 * 13 11 10 35 35 H 1.08998 * 109.88593 * 218.38999 * 14 13 11 36 36 H 1.09001 * 109.88477 * 97.22441 * 14 13 11 37 37 H 1.09001 * 109.47551 * 300.00302 * 18 16 15 38 38 H 1.09000 * 109.47097 * 60.00714 * 18 16 15 39 39 H 1.08010 * 119.84261 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.38682 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.48528 * 179.97438 * 25 24 23 42 42 H 1.09010 * 110.37044 * 265.29373 * 28 15 14 43 43 H 1.09000 * 110.46344 * 143.01450 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3250 -4.7034 0.7823 13 6 0.3773 -4.9577 -1.3954 14 6 0.0016 -6.4536 -1.4474 15 7 0.8817 -7.1578 -0.5034 16 6 0.8550 -8.4795 -0.2411 17 8 1.6314 -8.9544 0.5606 18 6 -0.1394 -9.3672 -0.9439 19 6 0.0375 -10.7888 -0.4758 20 7 0.8391 -11.6840 -1.0368 21 6 0.7592 -12.8341 -0.3772 22 7 1.3611 -14.0172 -0.5465 23 6 1.1031 -15.0253 0.2550 24 6 0.1893 -14.8770 1.3057 25 6 -0.4264 -13.6802 1.4853 26 7 -0.1385 -12.6565 0.6379 27 7 -0.5822 -11.3309 0.5455 28 6 1.7978 -6.1786 0.1092 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6849 -3.7105 -0.8952 32 1 2.6843 -3.7187 0.8848 33 1 -0.5151 -4.3340 -1.4473 34 1 1.0719 -4.7065 -2.1970 35 1 0.1546 -6.8395 -2.4553 36 1 -1.0394 -6.5849 -1.1521 37 1 -1.1511 -9.0327 -0.7143 38 1 0.0248 -9.3158 -2.0203 39 1 1.5988 -15.9729 0.1034 40 1 -0.0240 -15.7053 1.9651 41 1 -1.1349 -13.5436 2.2889 42 1 2.7415 -6.1493 -0.4357 43 1 1.9728 -6.4239 1.1567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752960015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:03 Heat of formation + Delta-G solvation = 122.994848 kcal Electronic energy + Delta-G solvation = -26543.773904 eV Core-core repulsion = 22627.287997 eV Total energy + Delta-G solvation = -3916.485907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.29441 -40.18349 -39.19282 -37.62723 -35.00122 -34.69706 -32.94235 -32.17099 -31.10905 -30.43913 -29.72474 -28.82170 -25.58347 -25.02735 -24.20673 -23.18907 -22.37533 -21.59932 -20.06803 -19.32213 -18.83808 -18.47317 -17.52219 -17.05212 -16.76562 -16.68130 -16.28239 -15.44970 -15.10848 -14.79401 -14.35576 -14.04107 -13.80676 -13.67759 -13.48938 -13.23091 -13.08850 -13.06616 -12.85731 -12.71432 -12.51019 -12.34984 -12.19084 -11.65233 -11.17986 -10.85226 -10.67826 -10.53629 -10.50626 -10.45106 -10.39326 -10.22284 -10.07052 -9.83608 -9.68961 -9.22319 -8.87677 -8.66406 -6.93279 -5.77400 -3.06006 -0.05085 0.27065 1.45508 2.04630 2.51656 2.73526 2.94487 3.08787 3.44550 3.47955 3.48955 3.49877 3.78415 4.03815 4.30880 4.35613 4.51082 4.58329 4.73052 4.77981 4.90161 4.93496 5.00228 5.11211 5.30553 5.32980 5.45603 5.56251 5.63448 5.68928 5.78865 5.82975 5.89613 6.01753 6.03245 6.12033 6.18840 6.38316 6.41993 6.72526 6.84013 6.97663 7.43849 7.54195 7.69566 8.04026 8.41589 9.52958 10.09812 10.44805 11.45401 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.045071 B = 0.001747 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.098701 B =16025.276162 C =16093.056565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.121 4.121 14 C 0.094 3.906 15 N -0.614 5.614 16 C 0.538 3.462 17 O -0.535 6.535 18 C -0.049 4.049 19 C 0.301 3.699 20 N -0.511 5.511 21 C 0.442 3.558 22 N -0.454 5.454 23 C 0.205 3.795 24 C -0.226 4.226 25 C 0.175 3.825 26 N -0.326 5.326 27 N -0.320 5.320 28 C 0.114 3.886 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.072 0.928 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -32.500 -0.080 32.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.159 4.159 14 C -0.028 4.028 15 N -0.348 5.348 16 C 0.324 3.676 17 O -0.412 6.412 18 C -0.091 4.091 19 C 0.020 3.980 20 N -0.243 5.243 21 C 0.082 3.918 22 N -0.168 5.168 23 C 0.018 3.982 24 C -0.252 4.252 25 C 0.037 3.963 26 N -0.105 5.105 27 N -0.151 5.151 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.208 0.792 40 H 0.193 0.807 41 H 0.200 0.800 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.769 -31.975 -0.334 32.198 hybrid contribution -0.407 0.738 0.769 1.141 sum -4.175 -31.237 0.435 31.518 Atomic orbital electron populations 1.69648 1.05093 1.25764 1.57754 1.24732 0.95537 0.97685 1.02988 0.86256 0.78509 0.83480 0.77863 1.21267 1.21704 1.21282 1.19190 0.91049 0.84133 1.42763 0.91204 1.42294 1.05830 0.99801 1.89559 1.20554 0.92761 0.84863 0.98220 1.22578 0.98658 0.93624 0.97640 0.89612 1.22662 1.02241 0.92884 0.98077 1.22245 0.94054 0.93829 0.92702 1.48442 1.36956 1.06162 1.43237 1.19589 0.84431 0.81052 0.82506 1.90749 1.41576 1.73553 1.35331 1.20022 1.01679 0.84491 1.02920 1.23510 0.89487 0.96092 0.88929 1.70681 1.26046 0.97556 1.29974 1.22719 0.89244 0.93835 0.86019 1.68011 1.23944 0.96556 1.28257 1.23603 0.90611 0.96777 0.87159 1.21965 1.01846 0.97923 1.03424 1.22194 0.96998 0.84388 0.92765 1.48776 1.29349 1.10109 1.22271 1.78551 1.26770 0.86595 1.23215 1.22278 0.92739 0.86836 0.98968 0.93483 0.78244 0.95888 0.96014 0.89348 0.90121 0.91133 0.91160 0.85710 0.85279 0.79215 0.80745 0.79972 0.91020 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.99 5.55 -59.90 -0.33 -18.33 16 10 C 0.16 3.19 5.71 -4.04 -0.02 3.16 16 11 C -0.11 -1.63 3.05 -88.47 -0.27 -1.90 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.12 -1.60 6.37 -24.90 -0.16 -1.76 16 14 C 0.09 1.00 6.49 -3.06 -0.02 0.98 16 15 N -0.61 -8.13 3.33 -170.52 -0.57 -8.70 16 16 C 0.54 7.79 7.84 -10.99 -0.09 7.70 16 17 O -0.54 -10.08 16.29 5.56 0.09 -9.99 16 18 C -0.05 -0.54 5.52 -29.03 -0.16 -0.70 16 19 C 0.30 4.24 6.59 -157.00 -1.03 3.21 16 20 N -0.51 -7.91 11.25 -11.80 -0.13 -8.04 16 21 C 0.44 5.94 8.99 -323.14 -2.91 3.04 16 22 N -0.45 -4.83 10.48 -13.82 -0.14 -4.98 16 23 C 0.20 0.98 11.26 -17.09 -0.19 0.79 16 24 C -0.23 -0.66 10.07 -39.79 -0.40 -1.06 16 25 C 0.17 1.04 11.32 -16.60 -0.19 0.85 16 26 N -0.33 -3.77 3.91 -13.84 -0.05 -3.82 16 27 N -0.32 -4.41 12.78 32.39 0.41 -3.99 16 28 C 0.11 1.66 6.37 -2.53 -0.02 1.64 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.38 9.84 7.67 -40.82 -0.31 9.52 16 31 H 0.02 0.45 7.97 -51.92 -0.41 0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.19 0.04 8.06 -52.48 -0.42 -0.39 16 40 H 0.18 -0.27 8.06 -52.49 -0.42 -0.70 16 41 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.07 1.03 8.04 -51.92 -0.42 0.61 16 43 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -39.82 369.52 -10.90 -50.73 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.75 Total: 2.72 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -5.70 Total: 8.66 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -0.09 Total: -74.98 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.82 -10.90 -50.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752960015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.720 kcal (2) G-P(sol) polarization free energy of solvation -39.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds