Wall clock time and date at job start Tue Mar 31 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09000 * 110.88593 * 308.87975 * 11 10 9 13 13 C 1.55157 * 111.00340 * 72.80369 * 11 10 9 14 14 C 1.54323 * 102.94289 * 153.57745 * 13 11 10 15 15 N 1.47024 * 107.27227 * 337.80876 * 14 13 11 16 16 C 1.34774 * 125.65115 * 178.90796 * 15 14 13 17 17 O 1.21280 * 120.00020 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99778 * 0.03260 * 16 15 14 19 19 C 1.50708 * 109.46983 * 180.02562 * 18 16 15 20 20 N 1.32615 * 125.18788 * 269.69898 * 19 18 16 21 21 C 1.32823 * 109.75618 * 179.88250 * 20 19 18 22 22 N 1.33817 * 132.50612 * 180.10801 * 21 20 19 23 23 C 1.31344 * 120.86655 * 180.29367 * 22 21 20 24 24 C 1.40039 * 120.31657 * 359.97438 * 23 22 21 25 25 C 1.35785 * 119.23550 * 0.02562 * 24 23 22 26 26 N 1.35969 * 119.02382 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.18029 * 90.00105 * 19 18 16 28 28 C 1.47426 * 108.70092 * 358.93896 * 15 14 13 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 33 33 H 1.08998 * 110.71991 * 271.94019 * 13 11 10 34 34 H 1.08998 * 110.72043 * 35.21511 * 13 11 10 35 35 H 1.08998 * 109.88593 * 218.38999 * 14 13 11 36 36 H 1.09001 * 109.88477 * 97.22441 * 14 13 11 37 37 H 1.09001 * 109.47551 * 300.00302 * 18 16 15 38 38 H 1.09000 * 109.47097 * 60.00714 * 18 16 15 39 39 H 1.08010 * 119.84261 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.38682 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.48528 * 179.97438 * 25 24 23 42 42 H 1.09010 * 110.37044 * 265.29373 * 28 15 14 43 43 H 1.09000 * 110.46344 * 143.01450 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3250 -4.7034 0.7823 13 6 0.3773 -4.9577 -1.3954 14 6 0.0016 -6.4536 -1.4474 15 7 0.8817 -7.1578 -0.5034 16 6 0.8550 -8.4795 -0.2411 17 8 1.6314 -8.9544 0.5606 18 6 -0.1394 -9.3672 -0.9439 19 6 0.0375 -10.7888 -0.4758 20 7 0.8391 -11.6840 -1.0368 21 6 0.7592 -12.8341 -0.3772 22 7 1.3611 -14.0172 -0.5465 23 6 1.1031 -15.0253 0.2550 24 6 0.1893 -14.8770 1.3057 25 6 -0.4264 -13.6802 1.4853 26 7 -0.1385 -12.6565 0.6379 27 7 -0.5822 -11.3309 0.5455 28 6 1.7978 -6.1786 0.1092 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6849 -3.7105 -0.8952 32 1 2.6843 -3.7187 0.8848 33 1 -0.5151 -4.3340 -1.4473 34 1 1.0719 -4.7065 -2.1970 35 1 0.1546 -6.8395 -2.4553 36 1 -1.0394 -6.5849 -1.1521 37 1 -1.1511 -9.0327 -0.7143 38 1 0.0248 -9.3158 -2.0203 39 1 1.5988 -15.9729 0.1034 40 1 -0.0240 -15.7053 1.9651 41 1 -1.1349 -13.5436 2.2889 42 1 2.7415 -6.1493 -0.4357 43 1 1.9728 -6.4239 1.1567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752960015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:02 Heat of formation + Delta-G solvation = 95.415842 kcal Electronic energy + Delta-G solvation = -26544.969819 eV Core-core repulsion = 22627.287997 eV Total energy + Delta-G solvation = -3917.681822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.01845 -41.25541 -39.88331 -38.83240 -36.44910 -35.65940 -34.12285 -33.42337 -31.96292 -31.82704 -30.62797 -30.03224 -27.10807 -25.71869 -25.04406 -24.45027 -23.87577 -22.48312 -21.39345 -20.31508 -19.50206 -19.16825 -19.10210 -18.43569 -17.56584 -17.54458 -17.07747 -16.61490 -16.41012 -15.82726 -15.48884 -15.34550 -15.00397 -14.79746 -14.68128 -14.28829 -14.11219 -13.97872 -13.88152 -13.76167 -13.65596 -13.21470 -13.10231 -12.99821 -12.93435 -12.72341 -12.25150 -12.10914 -11.78140 -11.68178 -11.60006 -11.40019 -11.22474 -11.03402 -10.90923 -10.68109 -9.93416 -9.74722 -8.98147 -7.93913 -5.22183 -0.51726 -0.35627 0.83967 1.24412 1.44735 1.48967 1.51402 1.57505 1.90395 2.24700 2.38133 2.57345 2.77497 3.29986 3.37013 3.40979 3.49855 3.65136 3.70411 3.88670 3.94075 4.11566 4.23691 4.29146 4.32549 4.38102 4.45525 4.52217 4.57507 4.63397 4.81030 4.82586 4.85181 4.97491 5.03375 5.06268 5.08863 5.23215 5.27252 5.35860 5.41693 5.51403 6.28325 6.36423 6.39091 6.76441 6.95961 7.35627 8.10274 8.35161 9.29114 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.045071 B = 0.001747 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.098701 B =16025.276162 C =16093.056565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.077 0.923 13 C -0.117 4.117 14 C 0.098 3.902 15 N -0.611 5.611 16 C 0.536 3.464 17 O -0.588 6.588 18 C -0.041 4.041 19 C 0.284 3.716 20 N -0.561 5.561 21 C 0.420 3.580 22 N -0.497 5.497 23 C 0.213 3.787 24 C -0.188 4.188 25 C 0.143 3.857 26 N -0.333 5.333 27 N -0.349 5.349 28 C 0.119 3.881 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.240 0.760 40 H 0.233 0.767 41 H 0.213 0.787 42 H 0.073 0.927 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -35.147 -0.001 35.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.096 0.904 13 C -0.155 4.155 14 C -0.023 4.023 15 N -0.344 5.344 16 C 0.324 3.676 17 O -0.468 6.468 18 C -0.082 4.082 19 C 0.003 3.997 20 N -0.294 5.294 21 C 0.060 3.940 22 N -0.214 5.214 23 C 0.030 3.970 24 C -0.212 4.212 25 C 0.008 3.992 26 N -0.112 5.112 27 N -0.181 5.181 28 C -0.004 4.004 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.230 0.770 42 H 0.091 0.909 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.232 -34.685 -0.245 34.943 hybrid contribution -0.200 1.274 0.856 1.548 sum -4.432 -33.410 0.611 33.709 Atomic orbital electron populations 1.69795 1.06436 1.26133 1.59307 1.25520 0.96415 1.00920 1.03617 0.85237 0.77234 0.79323 0.78098 1.20378 1.22045 1.20709 1.19584 0.91489 0.85426 1.41496 0.90876 1.42445 1.05674 1.00780 1.89420 1.20650 0.93398 0.84369 0.97864 1.22345 0.97706 0.92428 0.99098 0.90430 1.22613 1.01710 0.94984 0.96182 1.22409 0.94755 0.91426 0.93727 1.48477 1.36848 1.05857 1.43231 1.20173 0.84276 0.81272 0.81831 1.90718 1.43827 1.74510 1.37780 1.20129 1.01835 0.82594 1.03649 1.23884 0.89680 0.96945 0.89232 1.70540 1.27819 0.99015 1.32073 1.22925 0.90093 0.94369 0.86646 1.68114 1.25555 0.96845 1.30899 1.24668 0.89677 0.96804 0.85829 1.22692 0.98489 0.97870 1.02163 1.23164 0.98620 0.84211 0.93243 1.48851 1.29267 1.10188 1.22939 1.78344 1.27966 0.88132 1.23690 1.22087 0.93126 0.86697 0.98466 0.93973 0.79103 0.95422 0.96616 0.89692 0.90441 0.88116 0.88550 0.82801 0.82872 0.74381 0.75025 0.77028 0.90889 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.90 5.55 -343.44 -1.91 -38.80 16 10 C 0.16 6.44 5.71 86.38 0.49 6.93 16 11 C -0.10 -2.97 3.05 -9.40 -0.03 -3.00 16 12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.12 -2.97 6.37 31.78 0.20 -2.77 16 14 C 0.10 1.85 6.49 86.73 0.56 2.42 16 15 N -0.61 -15.74 3.33 -811.78 -2.70 -18.44 16 16 C 0.54 15.57 7.84 87.66 0.69 16.26 16 17 O -0.59 -23.06 16.29 -3.03 -0.05 -23.11 16 18 C -0.04 -0.87 5.52 29.10 0.16 -0.71 16 19 C 0.28 8.25 6.59 138.69 0.91 9.16 16 20 N -0.56 -18.18 11.25 -191.23 -2.15 -20.33 16 21 C 0.42 11.56 8.99 261.60 2.35 13.91 16 22 N -0.50 -10.30 10.48 -197.64 -2.07 -12.37 16 23 C 0.21 1.36 11.26 85.20 0.96 2.32 16 24 C -0.19 -0.30 10.07 22.14 0.22 -0.08 16 25 C 0.14 1.40 11.32 83.48 0.94 2.35 16 26 N -0.33 -7.70 3.91 -197.70 -0.77 -8.47 16 27 N -0.35 -9.87 12.78 -51.44 -0.66 -10.52 16 28 C 0.12 3.50 6.37 86.86 0.55 4.05 16 29 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.38 19.64 7.67 -92.71 -0.71 18.93 16 31 H 0.03 1.08 7.97 -2.38 -0.02 1.06 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.03 7.91 -2.39 -0.02 2.01 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.24 -1.10 8.06 -2.91 -0.02 -1.12 16 40 H 0.23 -2.34 8.06 -2.91 -0.02 -2.37 16 41 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.07 2.11 8.04 -2.38 -0.02 2.09 16 43 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -93.10 369.52 1.67 -91.43 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.33 Total: 16.39 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 9.33 Total: 34.21 kcal Atomic # 7 Polarization: -156.98 SS G_CDS: -9.97 Total: -166.95 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -93.10 1.67 -91.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752960015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.846 kcal (2) G-P(sol) polarization free energy of solvation -93.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds