Wall clock time and date at job start Tue Mar 31 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48501 * 109.46910 * 90.00317 * 3 2 1 5 5 H 1.48496 * 109.47127 * 330.00347 * 3 2 1 6 6 H 1.48497 * 109.47130 * 210.00095 * 3 2 1 7 7 C 1.38815 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 19.99633 * 7 2 1 9 9 N 1.36932 * 120.00092 * 199.99281 * 7 2 1 10 10 C 1.47429 * 125.64586 * 20.90869 * 9 7 2 11 11 C 1.54911 * 104.83041 * 155.83350 * 10 9 7 12 12 C 1.55154 * 101.58513 * 37.00548 * 11 10 9 13 13 C 1.47019 * 125.64827 * 200.59549 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51402 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68412 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.50694 * 109.47282 * 180.02562 * 19 17 16 21 21 N 1.32616 * 125.18169 * 269.69604 * 20 19 17 22 22 C 1.32831 * 109.75761 * 179.88207 * 21 20 19 23 23 N 1.33818 * 132.50421 * 180.10885 * 22 21 20 24 24 C 1.31351 * 120.86364 * 180.29127 * 23 22 21 25 25 C 1.40039 * 120.31432 * 359.97438 * 24 23 22 26 26 C 1.35786 * 119.23902 * 0.02562 * 25 24 23 27 27 N 1.35977 * 119.02190 * 0.02562 * 26 25 24 28 28 N 1.31188 * 125.18850 * 89.99466 * 20 19 17 29 29 H 0.96996 * 119.99850 * 174.91044 * 1 2 3 30 30 H 1.08997 * 110.36717 * 274.67060 * 10 9 7 31 31 H 1.08999 * 110.36617 * 36.99141 * 10 9 7 32 32 H 1.08994 * 111.00512 * 155.08656 * 11 10 9 33 33 H 1.09001 * 111.00145 * 278.93019 * 11 10 9 34 34 H 1.09002 * 110.71878 * 82.85908 * 12 11 10 35 35 H 1.08998 * 110.72268 * 205.95687 * 12 11 10 36 36 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 37 37 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 38 38 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 39 39 H 1.09007 * 109.47078 * 299.99755 * 19 17 16 40 40 H 1.08998 * 109.47642 * 59.99794 * 19 17 16 41 41 H 1.08002 * 119.84167 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.38418 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.48939 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3189 9 7 3.3178 -1.2378 0.4060 10 6 3.9823 -0.2306 1.2531 11 6 5.1608 -0.9859 1.9167 12 6 5.6184 -1.9214 0.7666 13 6 4.2895 -2.2899 0.0741 14 1 3.9330 -3.2527 0.4403 15 6 4.4945 -2.3497 -1.4410 16 7 3.2138 -2.6262 -2.0965 17 6 3.1246 -2.5964 -3.4409 18 8 4.1047 -2.3411 -4.1081 19 6 1.8071 -2.8802 -4.1152 20 6 1.9767 -2.7846 -5.6095 21 7 1.8097 -1.6829 -6.3285 22 6 2.0387 -1.9443 -7.6105 23 7 2.0033 -1.1813 -8.7093 24 6 2.2709 -1.6886 -9.8909 25 6 2.5999 -3.0436 -10.0203 26 6 2.6383 -3.8257 -8.9110 27 7 2.3552 -3.2707 -7.7024 28 7 2.3065 -3.7798 -6.3981 29 1 -0.4850 -0.8367 -0.0745 30 1 4.3547 0.5922 0.6429 31 1 3.2938 0.1404 2.0123 32 1 5.9564 -0.2970 2.2000 33 1 4.8205 -1.5622 2.7771 34 1 6.2814 -1.3937 0.0809 35 1 6.1063 -2.8113 1.1642 36 1 4.8840 -1.3945 -1.7929 37 1 5.2038 -3.1419 -1.6806 38 1 2.4300 -2.8308 -1.5628 39 1 1.4727 -3.8836 -3.8513 40 1 1.0660 -2.1519 -3.7859 41 1 2.2379 -1.0575 -10.7667 42 1 2.8205 -3.4619 -10.9913 43 1 2.8900 -4.8732 -8.9875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753116316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:18 Heat of formation + Delta-G solvation = 134.670145 kcal Electronic energy + Delta-G solvation = -27864.132106 eV Core-core repulsion = 23948.152478 eV Total energy + Delta-G solvation = -3915.979628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99976 -39.51415 -38.77920 -37.81151 -34.73541 -33.93910 -32.79284 -32.46247 -30.82385 -30.09194 -29.84285 -28.69354 -25.13291 -24.69363 -23.95546 -23.34722 -21.59650 -20.99007 -19.85471 -19.29001 -18.55708 -18.24694 -17.61359 -16.89038 -16.52036 -16.17464 -15.82451 -15.30652 -14.98650 -14.92520 -14.61897 -13.59506 -13.53945 -13.50061 -13.36619 -13.25851 -12.97481 -12.74346 -12.72246 -12.34001 -12.09279 -11.92377 -11.66527 -11.30671 -11.00212 -10.90457 -10.66793 -10.45874 -10.24456 -10.13758 -9.99852 -9.86624 -9.49727 -9.37694 -9.17619 -8.94510 -8.60362 -8.36710 -7.11425 -6.32681 -3.32576 0.20223 0.53580 1.73800 2.39058 3.07999 3.10711 3.27512 3.43434 3.58401 3.67787 3.70627 3.90733 4.00354 4.38680 4.55732 4.58031 4.79048 4.94244 5.01568 5.20284 5.27135 5.28962 5.35495 5.41651 5.49398 5.58631 5.65155 5.84868 5.91171 5.98824 6.08640 6.09854 6.12222 6.16912 6.25402 6.33034 6.38932 6.63194 6.79139 6.83847 7.06855 7.24754 7.63862 7.87044 8.12268 8.26758 8.74500 8.94846 9.51626 10.22106 11.11517 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.003054 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.369195 B = 9165.866591 C = 9956.927789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.299 1.299 6 H -0.285 1.285 7 C -0.325 4.325 8 H 0.072 0.928 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.045 0.955 15 C 0.116 3.884 16 N -0.697 5.697 17 C 0.521 3.479 18 O -0.554 6.554 19 C -0.057 4.057 20 C 0.311 3.689 21 N -0.505 5.505 22 C 0.440 3.560 23 N -0.451 5.451 24 C 0.201 3.799 25 C -0.230 4.230 26 C 0.174 3.826 27 N -0.327 5.327 28 N -0.325 5.325 29 H 0.263 0.737 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.411 0.589 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.189 0.811 42 H 0.173 0.827 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -9.674 -15.399 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.896 3.104 4 H -0.222 1.222 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.453 4.453 8 H 0.089 0.911 9 N -0.327 5.327 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.063 0.937 15 C -0.010 4.010 16 N -0.350 5.350 17 C 0.305 3.695 18 O -0.433 6.433 19 C -0.099 4.099 20 C 0.030 3.970 21 N -0.236 5.236 22 C 0.079 3.921 23 N -0.165 5.165 24 C 0.014 3.986 25 C -0.255 4.255 26 C 0.035 3.965 27 N -0.107 5.107 28 N -0.156 5.156 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.251 0.749 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.206 0.794 42 H 0.190 0.810 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.845 -7.365 -14.897 17.973 hybrid contribution 0.098 -2.475 -0.363 2.504 sum 6.943 -9.840 -15.260 19.439 Atomic orbital electron populations 1.70939 1.05814 1.29888 1.49049 1.25917 0.96377 1.00974 0.97858 0.83814 0.74428 0.75982 0.76151 1.22211 1.22725 1.21197 1.19785 0.84612 0.95043 1.45834 0.91054 1.44849 1.07626 1.23786 1.56455 1.22046 0.93559 0.92842 0.93572 1.22714 0.98176 0.98463 0.97523 1.22515 0.96520 0.99437 0.97707 1.21303 0.90104 0.93936 0.90993 0.93745 1.21938 0.84624 1.00038 0.94352 1.46026 1.14117 1.69445 1.05394 1.19867 0.89022 0.77594 0.83014 1.90672 1.38505 1.49618 1.64555 1.20095 0.99288 1.06606 0.83939 1.23596 0.91257 0.85268 0.96875 1.70761 1.28041 1.27000 0.97751 1.22765 0.95891 0.79872 0.93560 1.68002 1.17782 1.34315 0.96388 1.23557 0.87329 0.93218 0.94480 1.21908 1.08674 0.95506 0.99442 1.22138 0.92425 1.01070 0.80824 1.48822 1.43392 1.11205 1.07257 1.78523 1.32102 1.20631 0.84364 0.92711 0.95134 0.92395 0.91672 0.91417 0.91367 0.91498 0.91883 0.93169 0.74929 0.86170 0.84848 0.79402 0.80979 0.80207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 13.70 55.49 0.76 -26.55 16 2 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 3 Si 1.06 26.87 24.73 -169.99 -4.20 22.67 16 4 H -0.29 -7.03 6.83 56.52 0.39 -6.64 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.29 -7.07 6.21 56.52 0.35 -6.72 16 7 C -0.33 -8.35 8.74 -15.06 -0.13 -8.48 16 8 H 0.07 1.84 6.31 -52.49 -0.33 1.51 16 9 N -0.60 -13.57 2.92 -162.57 -0.47 -14.04 16 10 C 0.10 2.19 4.72 -2.53 -0.01 2.18 16 11 C -0.13 -2.10 7.08 -24.58 -0.17 -2.27 16 12 C -0.12 -1.90 6.47 -24.90 -0.16 -2.06 16 13 C 0.14 2.69 3.38 -66.96 -0.23 2.46 16 14 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 15 C 0.12 2.22 5.22 -4.04 -0.02 2.20 16 16 N -0.70 -13.50 4.80 -60.30 -0.29 -13.79 16 17 C 0.52 10.44 7.82 -10.99 -0.09 10.36 16 18 O -0.55 -12.98 16.02 5.56 0.09 -12.89 16 19 C -0.06 -0.97 6.33 -29.04 -0.18 -1.15 16 20 C 0.31 5.82 6.59 -157.00 -1.03 4.79 16 21 N -0.50 -10.22 11.25 -11.80 -0.13 -10.35 16 22 C 0.44 7.54 8.99 -323.13 -2.91 4.64 16 23 N -0.45 -6.31 10.48 -13.82 -0.14 -6.45 16 24 C 0.20 1.53 11.27 -17.08 -0.19 1.33 16 25 C -0.23 -1.24 10.07 -39.79 -0.40 -1.64 16 26 C 0.17 1.48 11.32 -16.59 -0.19 1.30 16 27 N -0.33 -4.82 3.91 -13.84 -0.05 -4.87 16 28 N -0.32 -5.59 12.78 32.39 0.41 -5.18 16 29 H 0.26 7.63 8.73 -40.82 -0.36 7.27 16 30 H 0.03 0.68 5.24 -51.93 -0.27 0.40 16 31 H 0.06 1.28 6.89 -51.93 -0.36 0.93 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.35 8.09 -51.93 -0.42 0.93 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 7.85 5.61 -40.82 -0.23 7.63 16 39 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.13 2.24 8.14 -51.93 -0.42 1.82 16 41 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.17 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -38.74 354.04 -9.97 -48.72 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.46 Total: 4.12 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -5.81 Total: 13.29 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: 0.08 Total: -81.24 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.20 Total: 22.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.74 -9.97 -48.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.386 kcal (2) G-P(sol) polarization free energy of solvation -38.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds