Wall clock time and date at job start Tue Mar 31 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48501 * 109.46910 * 90.00317 * 3 2 1 5 5 H 1.48496 * 109.47127 * 330.00347 * 3 2 1 6 6 H 1.48497 * 109.47130 * 210.00095 * 3 2 1 7 7 C 1.38815 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 19.99633 * 7 2 1 9 9 N 1.36932 * 120.00092 * 199.99281 * 7 2 1 10 10 C 1.47429 * 125.64586 * 20.90869 * 9 7 2 11 11 C 1.54911 * 104.83041 * 155.83350 * 10 9 7 12 12 C 1.55154 * 101.58513 * 37.00548 * 11 10 9 13 13 C 1.47019 * 125.64827 * 200.59549 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51402 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68412 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.50694 * 109.47282 * 180.02562 * 19 17 16 21 21 N 1.32616 * 125.18169 * 269.69604 * 20 19 17 22 22 C 1.32831 * 109.75761 * 179.88207 * 21 20 19 23 23 N 1.33818 * 132.50421 * 180.10885 * 22 21 20 24 24 C 1.31351 * 120.86364 * 180.29127 * 23 22 21 25 25 C 1.40039 * 120.31432 * 359.97438 * 24 23 22 26 26 C 1.35786 * 119.23902 * 0.02562 * 25 24 23 27 27 N 1.35977 * 119.02190 * 0.02562 * 26 25 24 28 28 N 1.31188 * 125.18850 * 89.99466 * 20 19 17 29 29 H 0.96996 * 119.99850 * 174.91044 * 1 2 3 30 30 H 1.08997 * 110.36717 * 274.67060 * 10 9 7 31 31 H 1.08999 * 110.36617 * 36.99141 * 10 9 7 32 32 H 1.08994 * 111.00512 * 155.08656 * 11 10 9 33 33 H 1.09001 * 111.00145 * 278.93019 * 11 10 9 34 34 H 1.09002 * 110.71878 * 82.85908 * 12 11 10 35 35 H 1.08998 * 110.72268 * 205.95687 * 12 11 10 36 36 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 37 37 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 38 38 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 39 39 H 1.09007 * 109.47078 * 299.99755 * 19 17 16 40 40 H 1.08998 * 109.47642 * 59.99794 * 19 17 16 41 41 H 1.08002 * 119.84167 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.38418 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.48939 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3189 9 7 3.3178 -1.2378 0.4060 10 6 3.9823 -0.2306 1.2531 11 6 5.1608 -0.9859 1.9167 12 6 5.6184 -1.9214 0.7666 13 6 4.2895 -2.2899 0.0741 14 1 3.9330 -3.2527 0.4403 15 6 4.4945 -2.3497 -1.4410 16 7 3.2138 -2.6262 -2.0965 17 6 3.1246 -2.5964 -3.4409 18 8 4.1047 -2.3411 -4.1081 19 6 1.8071 -2.8802 -4.1152 20 6 1.9767 -2.7846 -5.6095 21 7 1.8097 -1.6829 -6.3285 22 6 2.0387 -1.9443 -7.6105 23 7 2.0033 -1.1813 -8.7093 24 6 2.2709 -1.6886 -9.8909 25 6 2.5999 -3.0436 -10.0203 26 6 2.6383 -3.8257 -8.9110 27 7 2.3552 -3.2707 -7.7024 28 7 2.3065 -3.7798 -6.3981 29 1 -0.4850 -0.8367 -0.0745 30 1 4.3547 0.5922 0.6429 31 1 3.2938 0.1404 2.0123 32 1 5.9564 -0.2970 2.2000 33 1 4.8205 -1.5622 2.7771 34 1 6.2814 -1.3937 0.0809 35 1 6.1063 -2.8113 1.1642 36 1 4.8840 -1.3945 -1.7929 37 1 5.2038 -3.1419 -1.6806 38 1 2.4300 -2.8308 -1.5628 39 1 1.4727 -3.8836 -3.8513 40 1 1.0660 -2.1519 -3.7859 41 1 2.2379 -1.0575 -10.7667 42 1 2.8205 -3.4619 -10.9913 43 1 2.8900 -4.8732 -8.9875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753116316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:17 Heat of formation + Delta-G solvation = 106.274511 kcal Electronic energy + Delta-G solvation = -27865.363433 eV Core-core repulsion = 23948.152478 eV Total energy + Delta-G solvation = -3917.210955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.03722 -40.97446 -39.88654 -39.33733 -35.69302 -35.53726 -34.75690 -33.58594 -31.85805 -31.62045 -31.40465 -30.01691 -26.52812 -25.73341 -25.29710 -24.74488 -23.00304 -22.31736 -21.45764 -20.80896 -19.58414 -19.49119 -19.14539 -18.26956 -17.49596 -17.42550 -17.19206 -16.75998 -16.66156 -16.28092 -15.50494 -15.45142 -15.09482 -14.88949 -14.72937 -14.54928 -14.18193 -13.89593 -13.78668 -13.76009 -13.36084 -13.22767 -13.12707 -12.95155 -12.76581 -12.61893 -12.13672 -11.97923 -11.60591 -11.40913 -11.35453 -11.21366 -11.09332 -11.03067 -10.66859 -10.63492 -10.00384 -9.95835 -9.06887 -8.45559 -5.39860 -0.51303 -0.37523 0.83249 1.26465 1.37774 1.51922 1.53963 1.65065 2.09340 2.33913 2.43277 2.53481 2.74891 3.19642 3.34034 3.36447 3.49099 3.77191 3.86444 3.92612 3.99982 4.09498 4.17180 4.22598 4.33127 4.35299 4.43362 4.51831 4.63002 4.74998 4.78813 4.80898 4.99530 5.01088 5.03265 5.03729 5.14725 5.28709 5.36301 5.47448 5.50195 5.69114 6.24245 6.36000 6.52822 6.76821 6.88786 7.16828 7.54037 8.23335 8.98912 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.003054 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.369195 B = 9165.866591 C = 9956.927789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 1.091 2.909 4 H -0.274 1.274 5 H -0.318 1.318 6 H -0.283 1.283 7 C -0.291 4.291 8 H 0.067 0.933 9 N -0.620 5.620 10 C 0.091 3.909 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.056 0.944 15 C 0.118 3.882 16 N -0.697 5.697 17 C 0.520 3.480 18 O -0.591 6.591 19 C -0.050 4.050 20 C 0.290 3.710 21 N -0.570 5.570 22 C 0.419 3.581 23 N -0.499 5.499 24 C 0.211 3.789 25 C -0.186 4.186 26 C 0.143 3.857 27 N -0.332 5.332 28 N -0.342 5.342 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.241 0.759 42 H 0.237 0.763 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 -11.574 -17.465 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.260 4.260 3 Si 0.922 3.078 4 H -0.201 1.201 5 H -0.248 1.248 6 H -0.209 1.209 7 C -0.420 4.420 8 H 0.084 0.916 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.035 3.965 14 H 0.074 0.926 15 C -0.007 4.007 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.472 6.472 19 C -0.092 4.092 20 C 0.009 3.991 21 N -0.303 5.303 22 C 0.059 3.941 23 N -0.216 5.216 24 C 0.029 3.971 25 C -0.210 4.210 26 C 0.008 3.992 27 N -0.111 5.111 28 N -0.174 5.174 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.171 0.829 40 H 0.144 0.856 41 H 0.257 0.743 42 H 0.254 0.746 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.396 -9.306 -16.997 21.535 hybrid contribution -0.569 -1.990 -0.066 2.071 sum 8.827 -11.296 -17.063 22.286 Atomic orbital electron populations 1.70992 1.06851 1.29399 1.53273 1.26575 0.96508 1.03328 0.99605 0.83425 0.73455 0.73932 0.76954 1.20070 1.24769 1.20927 1.19845 0.86006 0.94236 1.41913 0.91558 1.45055 1.07458 1.25048 1.57049 1.22173 0.95072 0.92975 0.93118 1.22675 0.96685 0.98544 0.97568 1.22554 0.94662 1.00916 0.97146 1.21534 0.91162 0.93064 0.90784 0.92579 1.21938 0.84809 0.99372 0.94617 1.46074 1.14371 1.69050 1.05388 1.20323 0.89617 0.76606 0.82963 1.90635 1.40046 1.51294 1.65273 1.20062 0.97229 1.08179 0.83734 1.23634 0.92615 0.85601 0.97274 1.70566 1.30902 1.28793 1.00055 1.22870 0.96396 0.81173 0.93637 1.68114 1.20861 1.35214 0.97393 1.24705 0.83494 0.95183 0.93741 1.22708 1.03641 0.93888 1.00766 1.23233 0.93023 1.03534 0.79416 1.48874 1.43572 1.10772 1.07879 1.78288 1.32733 1.20735 0.85669 0.93648 0.96173 0.94112 0.88698 0.90306 0.90843 0.87754 0.94676 0.90903 0.74880 0.82872 0.85634 0.74274 0.74627 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.72 13.70 21.65 0.30 -59.42 16 2 C -0.06 -3.71 5.45 84.86 0.46 -3.25 16 3 Si 1.09 56.11 24.73 68.60 1.70 57.81 16 4 H -0.27 -12.98 6.83 99.48 0.68 -12.30 16 5 H -0.32 -17.21 7.11 99.48 0.71 -16.50 16 6 H -0.28 -14.16 6.21 99.48 0.62 -13.55 16 7 C -0.29 -15.20 8.74 84.03 0.73 -14.46 16 8 H 0.07 3.50 6.31 -2.91 -0.02 3.48 16 9 N -0.62 -27.65 2.92 -668.26 -1.95 -29.59 16 10 C 0.09 3.70 4.72 86.86 0.41 4.11 16 11 C -0.12 -3.34 7.08 31.99 0.23 -3.11 16 12 C -0.11 -3.10 6.47 31.78 0.21 -2.89 16 13 C 0.14 4.99 3.38 45.34 0.15 5.14 16 14 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.12 4.44 5.22 86.38 0.45 4.89 16 16 N -0.70 -27.48 4.80 -463.07 -2.22 -29.70 16 17 C 0.52 21.66 7.82 87.66 0.69 22.35 16 18 O -0.59 -28.79 16.02 -3.01 -0.05 -28.84 16 19 C -0.05 -1.81 6.33 29.10 0.18 -1.62 16 20 C 0.29 11.54 6.59 138.68 0.91 12.45 16 21 N -0.57 -24.72 11.25 -191.24 -2.15 -26.87 16 22 C 0.42 14.88 8.99 261.60 2.35 17.23 16 23 N -0.50 -13.75 10.48 -197.63 -2.07 -15.82 16 24 C 0.21 2.43 11.27 85.20 0.96 3.39 16 25 C -0.19 -1.06 10.07 22.14 0.22 -0.83 16 26 C 0.14 2.03 11.32 83.48 0.94 2.98 16 27 N -0.33 -9.73 3.91 -197.69 -0.77 -10.50 16 28 N -0.34 -12.16 12.78 -51.45 -0.66 -12.82 16 29 H 0.25 15.51 8.73 -92.71 -0.81 14.70 16 30 H 0.02 0.88 5.24 -2.39 -0.01 0.87 16 31 H 0.04 1.78 6.89 -2.39 -0.02 1.77 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.95 7.84 -2.39 -0.02 1.93 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.41 16.05 5.61 -92.71 -0.52 15.53 16 39 H 0.15 4.24 8.14 -2.38 -0.02 4.22 16 40 H 0.13 4.63 8.14 -2.39 -0.02 4.62 16 41 H 0.24 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.24 -1.65 8.06 -2.91 -0.02 -1.67 16 43 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -94.31 354.04 1.41 -92.90 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.38 Total: 16.49 kcal Atomic # 6 Polarization: 37.45 SS G_CDS: 8.91 Total: 46.36 kcal Atomic # 7 Polarization: -175.20 SS G_CDS: -9.53 Total: -184.73 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 56.11 SS G_CDS: 1.70 Total: 57.81 kcal Total: -94.31 1.41 -92.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.177 kcal (2) G-P(sol) polarization free energy of solvation -94.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds