Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 120.00081 * 2 1 4 4 H 1.07996 * 119.99718 * 211.39296 * 3 2 1 5 5 C 1.38811 * 119.99875 * 31.39743 * 3 2 1 6 6 N 1.31620 * 119.99950 * 6.81207 * 5 3 2 7 7 Si 1.86793 * 119.99941 * 186.81680 * 5 3 2 8 8 H 1.48504 * 109.47266 * 59.99628 * 7 5 3 9 9 H 1.48499 * 109.47273 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47178 * 299.99832 * 7 5 3 11 11 C 1.46497 * 120.00160 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47351 * 90.00203 * 11 2 1 13 13 N 1.46494 * 109.47348 * 180.02562 * 12 11 2 14 14 C 1.46508 * 119.99725 * 269.99662 * 13 12 11 15 15 C 1.34771 * 120.00432 * 90.00336 * 13 12 11 16 16 O 1.21600 * 119.99906 * 3.01403 * 15 13 12 17 17 C 1.47516 * 120.00382 * 183.01990 * 15 13 12 18 18 C 1.36620 * 125.76779 * 173.90516 * 17 15 13 19 19 N 1.35071 * 106.79469 * 180.02562 * 18 17 15 20 20 C 1.40244 * 126.61380 * 180.02562 * 19 18 17 21 21 C 1.39245 * 120.48260 * 180.02562 * 20 19 18 22 22 C 1.38518 * 118.36439 * 180.02562 * 21 20 19 23 23 C 1.38270 * 119.22537 * 359.97438 * 22 21 20 24 24 N 1.31857 * 120.91030 * 0.02562 * 23 22 21 25 25 C 1.31818 * 121.79158 * 359.65767 * 24 23 22 26 26 N 1.40212 * 106.77070 * 0.02562 * 19 18 17 27 27 N 1.28752 * 108.39229 * 359.97438 * 26 19 18 28 28 H 1.08991 * 109.47551 * 265.30571 * 1 2 3 29 29 H 1.09004 * 109.46729 * 25.30826 * 1 2 3 30 30 H 1.08999 * 109.46841 * 145.30438 * 1 2 3 31 31 H 0.97005 * 119.99948 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.47047 * 330.00376 * 11 2 1 33 33 H 1.08995 * 109.47592 * 210.00544 * 11 2 1 34 34 H 1.09000 * 109.46957 * 59.99668 * 12 11 2 35 35 H 1.09004 * 109.46820 * 300.00565 * 12 11 2 36 36 H 1.08990 * 109.47208 * 264.02453 * 14 13 12 37 37 H 1.08991 * 109.46873 * 24.03322 * 14 13 12 38 38 H 1.09004 * 109.46748 * 144.02527 * 14 13 12 39 39 H 1.08003 * 126.60315 * 0.02562 * 18 17 15 40 40 H 1.07994 * 120.81789 * 359.97438 * 21 20 19 41 41 H 1.07991 * 120.38462 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.54379 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.66518 * 180.32991 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1111 1.2543 -0.4872 5 6 1.6081 2.3001 0.6263 6 7 0.5039 2.1857 1.3334 7 14 2.4462 3.9616 0.4654 8 1 2.5065 4.3490 -0.9670 9 1 1.6746 4.9806 1.2212 10 1 3.8238 3.8763 1.0134 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 4.6496 -2.9805 -1.4410 15 6 2.5103 -4.1469 -1.4409 16 8 1.2956 -4.1472 -1.4965 17 6 3.2459 -5.4238 -1.3730 18 6 2.6845 -6.6630 -1.2478 19 7 3.7015 -7.5516 -1.2235 20 6 3.5924 -8.9449 -1.1073 21 6 4.7325 -9.7442 -1.0952 22 6 4.5737 -11.1153 -0.9791 23 6 3.2989 -11.6413 -0.8792 24 7 2.2393 -10.8565 -0.8938 25 6 2.3466 -9.5467 -0.9965 26 7 4.8875 -6.8122 -1.3369 27 7 4.5817 -5.5645 -1.4230 28 1 -0.3634 -0.0841 1.0241 29 1 -0.3633 0.9291 -0.4393 30 1 -0.3633 -0.8449 -0.5850 31 1 0.1252 2.9643 1.7708 32 1 1.6084 -2.0282 0.5147 33 1 3.1498 -1.1382 0.5144 34 1 3.0416 -0.9515 -1.9558 35 1 1.5001 -1.8415 -1.9555 36 1 5.0130 -3.0880 -2.4629 37 1 5.0132 -2.0419 -1.0228 38 1 5.0126 -3.8121 -0.8369 39 1 1.6304 -6.8888 -1.1811 40 1 5.7163 -9.3060 -1.1753 41 1 5.4356 -11.7658 -0.9659 42 1 3.1691 -12.7096 -0.7880 43 1 1.4558 -8.9361 -0.9996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753854543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = 150.889631 kcal Electronic energy + Delta-G solvation = -26917.085494 eV Core-core repulsion = 23001.809196 eV Total energy + Delta-G solvation = -3915.276298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83943 -40.78360 -39.35938 -36.07242 -35.61797 -34.75797 -33.09830 -31.69517 -31.23536 -30.60910 -28.51144 -26.50371 -25.76074 -25.35288 -24.95701 -23.83491 -22.41041 -22.21524 -20.59986 -19.84509 -18.53980 -17.63740 -17.00287 -16.69245 -16.58996 -16.23393 -16.14172 -15.51147 -15.15498 -14.72567 -14.56145 -14.41250 -13.96628 -13.75914 -13.56407 -13.06577 -12.94392 -12.82446 -12.73960 -12.52286 -12.35786 -12.05762 -12.01721 -11.26156 -11.11063 -10.82505 -10.80658 -10.52157 -10.48576 -10.30574 -10.18675 -10.00188 -9.90980 -9.84225 -9.73789 -9.24196 -8.60809 -8.33590 -6.56490 -5.71364 -3.24616 -0.22508 0.42963 1.18889 1.43062 1.48222 3.04170 3.08302 3.29276 3.40356 3.45289 3.46159 3.64073 3.74549 3.85313 3.97380 4.21001 4.37583 4.52535 4.57112 4.61443 4.69827 4.90431 5.17721 5.32128 5.38265 5.45793 5.47497 5.65352 5.72527 5.79498 5.80566 6.09281 6.14958 6.22714 6.35889 6.60365 6.72497 6.96104 7.03087 7.13532 7.43099 7.47219 7.62108 7.76512 7.83258 8.26397 8.49808 9.28343 9.89051 10.43854 11.34707 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.002073 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.296619 B =13503.028204 C =14046.101928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.064 0.936 5 C 0.008 3.992 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.142 3.858 12 C 0.092 3.908 13 N -0.591 5.591 14 C 0.073 3.927 15 C 0.593 3.407 16 O -0.535 6.535 17 C -0.077 4.077 18 C 0.092 3.908 19 N -0.313 5.313 20 C 0.087 3.913 21 C -0.061 4.061 22 C -0.149 4.149 23 C 0.100 3.900 24 N -0.458 5.458 25 C 0.104 3.896 26 N -0.063 5.063 27 N -0.189 5.189 28 H 0.019 0.981 29 H 0.050 0.950 30 H -0.002 1.002 31 H 0.254 0.746 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.211 0.789 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -28.152 -5.857 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.391 4.391 4 H 0.082 0.918 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.013 3.987 12 C -0.032 4.032 13 N -0.322 5.322 14 C -0.070 4.070 15 C 0.378 3.622 16 O -0.411 6.411 17 C -0.215 4.215 18 C -0.061 4.061 19 N -0.093 5.093 20 C -0.007 4.007 21 C -0.089 4.089 22 C -0.169 4.169 23 C -0.057 4.057 24 N -0.166 5.166 25 C -0.057 4.057 26 N -0.041 5.041 27 N -0.063 5.063 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.227 0.773 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.185 0.815 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.787 -28.348 -5.782 30.237 hybrid contribution 0.365 1.321 -0.034 1.371 sum 9.152 -27.028 -5.816 29.122 Atomic orbital electron populations 1.20764 0.82718 0.97127 0.97697 1.43745 1.01767 1.00333 1.86125 1.19079 1.03496 0.87494 1.29059 0.91849 1.25252 0.97898 0.99112 0.96895 1.70024 1.21312 1.29028 1.34387 0.86340 0.78885 0.83658 0.77608 1.20939 1.21623 1.20845 1.20998 0.96373 0.88864 0.92423 1.22613 0.96815 0.81613 1.02157 1.47781 1.07658 1.06027 1.70747 1.22157 0.78774 1.03833 1.02268 1.16737 0.86114 0.81667 0.77702 1.90830 1.12433 1.86587 1.51261 1.21673 0.89629 0.95443 1.14729 1.23424 0.96320 0.88285 0.98055 1.47491 1.07195 1.05441 1.49124 1.18754 0.96941 0.79182 1.05859 1.21487 0.98571 0.93406 0.95425 1.22195 0.99759 0.94663 1.00289 1.23040 0.87806 1.00757 0.94082 1.67850 1.33635 1.03767 1.11303 1.22776 0.94974 0.91673 0.96270 1.82078 1.03203 0.96618 1.22236 1.74835 1.12858 1.08869 1.09696 0.96269 0.93082 0.98352 0.93603 0.94432 0.93477 0.90426 0.90268 0.92692 0.90793 0.89187 0.77279 0.82808 0.83178 0.81490 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 9.00 59.85 0.54 4.72 16 2 N -0.60 -15.56 2.90 -181.13 -0.52 -16.09 16 3 C -0.26 -7.25 9.57 -15.06 -0.14 -7.39 16 4 H 0.06 1.69 7.84 -52.49 -0.41 1.28 16 5 C 0.01 0.22 5.14 -17.43 -0.09 0.13 16 6 N -0.90 -26.85 10.98 55.49 0.61 -26.24 16 7 Si 0.91 21.89 29.56 -169.99 -5.02 16.87 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 C 0.14 3.11 6.01 -4.04 -0.02 3.08 16 12 C 0.09 1.73 5.73 -4.05 -0.02 1.71 16 13 N -0.59 -9.55 2.87 -182.82 -0.53 -10.08 16 14 C 0.07 0.97 9.58 59.85 0.57 1.54 16 15 C 0.59 9.65 7.67 -12.48 -0.10 9.56 16 16 O -0.53 -10.10 16.43 5.28 0.09 -10.01 16 17 C -0.08 -1.03 6.70 -83.54 -0.56 -1.59 16 18 C 0.09 0.95 10.62 -16.71 -0.18 0.77 16 19 N -0.31 -3.09 3.82 -10.33 -0.04 -3.13 16 20 C 0.09 0.68 6.72 -83.43 -0.56 0.12 16 21 C -0.06 -0.37 9.80 -39.10 -0.38 -0.76 16 22 C -0.15 -0.59 10.11 -39.47 -0.40 -0.99 16 23 C 0.10 0.48 11.18 -17.53 -0.20 0.28 16 24 N -0.46 -3.32 10.35 -13.10 -0.14 -3.45 16 25 C 0.10 0.72 10.64 -17.35 -0.18 0.54 16 26 N -0.06 -0.74 13.20 60.35 0.80 0.06 16 27 N -0.19 -2.45 8.80 32.85 0.29 -2.16 16 28 H 0.02 0.52 7.75 -51.93 -0.40 0.12 16 29 H 0.05 1.39 7.10 -51.93 -0.37 1.03 16 30 H 0.00 -0.05 8.11 -51.93 -0.42 -0.47 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.08 1.61 7.38 -51.93 -0.38 1.23 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 38 H 0.09 1.16 5.32 -51.93 -0.28 0.89 16 39 H 0.21 1.51 7.15 -52.48 -0.38 1.13 16 40 H 0.15 0.85 7.82 -52.49 -0.41 0.44 16 41 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 42 H 0.17 0.30 8.06 -52.49 -0.42 -0.12 16 43 H 0.17 0.85 6.84 -52.49 -0.36 0.49 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -34.66 368.78 -6.12 -40.78 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.48 Total: -3.82 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -1.73 Total: 11.71 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.47 Total: -61.09 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.66 -6.12 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753854543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.672 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds