Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86794 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47605 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47093 * 300.00109 * 3 2 1 6 6 H 1.48508 * 109.47020 * 59.99645 * 3 2 1 7 7 C 1.40056 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99982 * 0.02562 * 9 7 2 11 11 N 1.34769 * 119.99728 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99898 * 180.02562 * 11 9 7 13 13 C 1.36996 * 120.00243 * 180.02562 * 12 11 9 14 14 N 1.29329 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00013 * 180.02562 * 13 12 11 16 16 O 1.42904 * 109.47109 * 180.02562 * 15 13 12 17 17 C 1.35945 * 117.00344 * 179.97438 * 16 15 13 18 18 C 1.38698 * 120.04311 * 0.27408 * 17 16 15 19 19 C 1.38149 * 119.97097 * 180.23552 * 18 17 16 20 20 C 1.38385 * 120.06093 * 359.48600 * 19 18 17 21 21 Cl 1.73597 * 119.95375 * 180.27892 * 20 19 18 22 22 C 1.38341 * 120.09069 * 0.25867 * 20 19 18 23 23 C 1.38256 * 120.03355 * 359.97438 * 22 20 19 24 24 Cl 1.73603 * 120.03249 * 180.02562 * 23 22 20 25 25 H 0.97003 * 120.00338 * 359.97438 * 1 2 3 26 26 H 0.96992 * 120.00418 * 0.02562 * 11 9 7 27 27 H 0.97002 * 119.99754 * 0.02562 * 12 11 9 28 28 H 0.96995 * 119.99936 * 0.02562 * 14 13 12 29 29 H 1.08991 * 109.47663 * 60.00228 * 15 13 12 30 30 H 1.09008 * 109.47101 * 299.99444 * 15 13 12 31 31 H 1.08002 * 120.02026 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.97347 * 179.77134 * 19 18 17 33 33 H 1.07999 * 119.98285 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 7 1.2484 -4.8610 0.0022 13 6 1.9334 -6.0475 0.0027 14 7 3.2266 -6.0475 0.0022 15 6 1.1798 -7.3526 0.0027 16 8 2.1084 -8.4388 0.0040 17 6 1.5888 -9.6950 0.0047 18 6 0.2140 -9.8778 -0.0016 19 6 -0.3124 -11.1551 0.0041 20 6 0.5308 -12.2524 0.0052 21 17 -0.1337 -13.8561 0.0050 22 6 1.9025 -12.0730 0.0060 23 6 2.4335 -10.7965 0.0053 24 17 4.1548 -10.5714 0.0057 25 1 -0.4851 0.8400 0.0004 26 1 2.9189 -3.6477 0.0013 27 1 0.2784 -4.8610 0.0022 28 1 3.7116 -5.2075 0.0019 29 1 0.5536 -7.4106 -0.8874 30 1 0.5528 -7.4101 0.8926 31 1 -0.4449 -9.0221 -0.0065 32 1 -1.3830 -11.2975 0.0030 33 1 2.5590 -12.9306 0.0073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002512153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = 4.342717 kcal Electronic energy + Delta-G solvation = -21932.407477 eV Core-core repulsion = 18047.375140 eV Total energy + Delta-G solvation = -3885.032337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 331.028 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -40.62618 -38.69268 -37.96418 -36.87642 -36.40047 -36.07438 -32.97135 -32.31514 -31.40912 -30.19205 -29.72844 -27.84749 -26.03193 -23.42247 -22.74405 -20.75487 -19.93027 -18.95903 -18.10951 -17.22149 -16.75084 -16.40598 -16.37828 -16.05328 -15.24769 -15.02539 -14.43661 -14.25270 -14.15685 -13.89614 -13.47913 -12.97284 -12.75210 -12.71704 -12.51684 -12.15994 -11.74398 -11.46305 -11.43912 -11.26148 -11.16616 -11.02612 -10.89315 -10.76127 -10.40721 -9.37675 -9.36055 -9.32085 -9.00018 -8.45776 -8.05675 -6.96920 -6.46628 -4.92046 0.63018 0.71749 1.59903 2.03360 2.31330 2.78879 3.01257 3.05132 3.09159 3.13885 3.32881 3.98768 4.17992 4.32350 4.32646 4.47538 4.59082 4.80025 4.88822 4.96002 5.16967 5.29702 5.51173 5.51526 5.61341 5.69255 5.96582 6.35599 6.89393 7.19457 7.22306 7.73545 7.92594 8.27185 8.74995 8.84997 9.08660 10.28092 10.46359 Molecular weight = 331.03amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002028 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.415478 B =13805.026619 C =14780.296502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.565 5.565 12 N -0.549 5.549 13 C 0.397 3.603 14 N -0.749 5.749 15 C 0.121 3.879 16 O -0.260 6.260 17 C 0.152 3.848 18 C -0.192 4.192 19 C -0.062 4.062 20 C -0.069 4.069 21 Cl -0.064 7.064 22 C -0.064 4.064 23 C -0.060 4.060 24 Cl -0.037 7.037 25 H 0.272 0.728 26 H 0.401 0.599 27 H 0.420 0.580 28 H 0.329 0.671 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -22.773 0.006 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.362 3.638 10 O -0.458 6.458 11 N -0.318 5.318 12 N -0.283 5.283 13 C 0.113 3.887 14 N -0.388 5.388 15 C 0.042 3.958 16 O -0.170 6.170 17 C 0.103 3.897 18 C -0.211 4.211 19 C -0.081 4.081 20 C -0.096 4.096 21 Cl -0.035 7.035 22 C -0.084 4.084 23 C -0.088 4.088 24 Cl -0.008 7.008 25 H 0.083 0.917 26 H 0.240 0.760 27 H 0.260 0.740 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.445 -23.365 0.005 23.370 hybrid contribution 0.076 1.706 0.003 1.708 sum 0.521 -21.659 0.008 21.665 Atomic orbital electron populations 1.70006 1.07156 1.27842 1.33985 1.25723 0.94788 1.00511 0.92393 0.86142 0.80436 0.80833 0.78423 1.18516 1.19925 1.19930 1.20707 0.93892 0.87862 1.54629 0.90674 1.18610 0.87649 0.80561 0.76975 1.90616 1.13760 1.85636 1.55772 1.45825 1.06940 0.94850 1.84209 1.43922 1.08093 0.96871 1.79378 1.21568 0.89869 0.84693 0.92528 1.69576 1.04229 1.34826 1.30207 1.21179 0.89779 0.81536 1.03301 1.86381 1.33459 1.10257 1.86883 1.18842 0.91252 0.85052 0.94517 1.21269 0.93212 0.98675 1.07925 1.20940 1.00423 0.90282 0.96444 1.20570 0.92735 0.86688 1.09593 1.98377 1.85596 1.22400 1.97168 1.20739 0.93650 0.95700 0.98262 1.19986 0.86419 0.91693 1.10659 1.98410 1.08176 1.97334 1.96850 0.91688 0.76018 0.73974 0.85312 0.89095 0.89102 0.83313 0.83981 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.44 11.83 55.55 0.66 -20.78 16 2 C 0.09 2.28 5.50 -17.37 -0.10 2.18 16 3 Si 0.92 18.98 29.56 -169.99 -5.02 13.96 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.53 -14.06 9.54 -35.63 -0.34 -14.40 16 8 H 0.08 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.56 14.79 7.86 -12.99 -0.10 14.68 16 10 O -0.58 -17.22 14.86 5.20 0.08 -17.15 16 11 N -0.56 -12.11 6.26 30.19 0.19 -11.92 16 12 N -0.55 -9.93 6.35 32.83 0.21 -9.72 16 13 C 0.40 6.23 8.02 -154.56 -1.24 4.99 16 14 N -0.75 -13.01 13.32 32.89 0.44 -12.58 16 15 C 0.12 1.37 5.25 36.01 0.19 1.55 16 16 O -0.26 -3.35 9.06 -19.57 -0.18 -3.53 16 17 C 0.15 1.65 6.68 -39.20 -0.26 1.38 16 18 C -0.19 -1.59 9.04 -39.44 -0.36 -1.95 16 19 C -0.06 -0.47 9.82 -39.56 -0.39 -0.86 16 20 C -0.07 -0.58 6.32 -39.49 -0.25 -0.82 16 21 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 22 C -0.06 -0.57 9.61 -39.54 -0.38 -0.95 16 23 C -0.06 -0.64 6.33 -39.37 -0.25 -0.89 16 24 Cl -0.04 -0.43 28.50 -51.86 -1.48 -1.91 16 25 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 26 H 0.40 7.80 6.72 -182.60 -1.23 6.57 16 27 H 0.42 7.41 8.03 -182.59 -1.47 5.95 16 28 H 0.33 5.72 6.69 -40.82 -0.27 5.45 16 29 H 0.09 0.80 7.65 -51.93 -0.40 0.40 16 30 H 0.09 0.80 7.67 -51.92 -0.40 0.40 16 31 H 0.15 0.90 6.30 -52.49 -0.33 0.57 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -32.98 329.30 -9.61 -42.58 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.48 Total: 13.15 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -3.47 Total: 4.92 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 1.49 Total: -55.00 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.10 Total: -20.67 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.98 Total: -3.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.98 -9.61 -42.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002512153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.926 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.58 seconds