Wall clock time and date at job start Tue Mar 31 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86794 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47605 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47093 * 300.00109 * 3 2 1 6 6 H 1.48508 * 109.47020 * 59.99645 * 3 2 1 7 7 C 1.40056 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99982 * 0.02562 * 9 7 2 11 11 N 1.34769 * 119.99728 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99898 * 180.02562 * 11 9 7 13 13 C 1.36996 * 120.00243 * 180.02562 * 12 11 9 14 14 N 1.29329 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00013 * 180.02562 * 13 12 11 16 16 O 1.42904 * 109.47109 * 180.02562 * 15 13 12 17 17 C 1.35945 * 117.00344 * 179.97438 * 16 15 13 18 18 C 1.38698 * 120.04311 * 0.27408 * 17 16 15 19 19 C 1.38149 * 119.97097 * 180.23552 * 18 17 16 20 20 C 1.38385 * 120.06093 * 359.48600 * 19 18 17 21 21 Cl 1.73597 * 119.95375 * 180.27892 * 20 19 18 22 22 C 1.38341 * 120.09069 * 0.25867 * 20 19 18 23 23 C 1.38256 * 120.03355 * 359.97438 * 22 20 19 24 24 Cl 1.73603 * 120.03249 * 180.02562 * 23 22 20 25 25 H 0.97003 * 120.00338 * 359.97438 * 1 2 3 26 26 H 0.96992 * 120.00418 * 0.02562 * 11 9 7 27 27 H 0.97002 * 119.99754 * 0.02562 * 12 11 9 28 28 H 0.96995 * 119.99936 * 0.02562 * 14 13 12 29 29 H 1.08991 * 109.47663 * 60.00228 * 15 13 12 30 30 H 1.09008 * 109.47101 * 299.99444 * 15 13 12 31 31 H 1.08002 * 120.02026 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.97347 * 179.77134 * 19 18 17 33 33 H 1.07999 * 119.98285 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 7 1.2484 -4.8610 0.0022 13 6 1.9334 -6.0475 0.0027 14 7 3.2266 -6.0475 0.0022 15 6 1.1798 -7.3526 0.0027 16 8 2.1084 -8.4388 0.0040 17 6 1.5888 -9.6950 0.0047 18 6 0.2140 -9.8778 -0.0016 19 6 -0.3124 -11.1551 0.0041 20 6 0.5308 -12.2524 0.0052 21 17 -0.1337 -13.8561 0.0050 22 6 1.9025 -12.0730 0.0060 23 6 2.4335 -10.7965 0.0053 24 17 4.1548 -10.5714 0.0057 25 1 -0.4851 0.8400 0.0004 26 1 2.9189 -3.6477 0.0013 27 1 0.2784 -4.8610 0.0022 28 1 3.7116 -5.2075 0.0019 29 1 0.5536 -7.4106 -0.8874 30 1 0.5528 -7.4101 0.8926 31 1 -0.4449 -9.0221 -0.0065 32 1 -1.3830 -11.2975 0.0030 33 1 2.5590 -12.9306 0.0073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002512153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:10 Heat of formation + Delta-G solvation = -17.874681 kcal Electronic energy + Delta-G solvation = -21933.370895 eV Core-core repulsion = 18047.375140 eV Total energy + Delta-G solvation = -3885.995755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 331.028 amu Computer time = -1.11 seconds Orbital eigenvalues (eV) -41.40626 -40.16613 -39.01241 -37.88901 -37.55563 -37.00876 -34.83109 -34.05727 -32.08559 -31.28870 -30.95399 -29.05152 -27.77203 -24.17377 -23.51244 -22.48460 -21.34180 -20.03942 -19.42347 -18.44878 -18.00289 -17.60551 -17.36565 -17.23204 -16.79637 -15.83844 -15.59216 -15.39626 -15.20639 -15.10824 -14.79803 -14.55398 -13.81851 -13.67472 -13.43506 -13.23517 -13.23294 -12.84247 -12.76068 -12.47860 -12.41623 -12.01629 -11.89785 -11.85414 -11.67301 -11.05442 -10.81426 -10.69056 -10.13991 -10.05499 -9.19709 -8.62242 -8.41804 -6.96025 -0.03892 0.02678 0.90569 1.01156 1.35008 1.38379 1.43387 1.53957 1.59763 2.15637 2.31400 2.37163 2.37727 3.15684 3.49529 3.66031 3.73058 3.96937 3.99094 4.03365 4.16635 4.21145 4.55213 4.63543 4.95211 5.03144 5.06460 5.24986 5.34770 5.45265 5.97274 6.10356 6.19681 6.66644 6.77588 7.19880 7.46228 8.32764 8.53774 Molecular weight = 331.03amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002028 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.415478 B =13805.026619 C =14780.296502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.545 3.455 10 O -0.619 6.619 11 N -0.560 5.560 12 N -0.551 5.551 13 C 0.403 3.597 14 N -0.768 5.768 15 C 0.119 3.881 16 O -0.286 6.286 17 C 0.134 3.866 18 C -0.184 4.184 19 C -0.057 4.057 20 C -0.071 4.071 21 Cl -0.058 7.058 22 C -0.065 4.065 23 C -0.076 4.076 24 Cl -0.056 7.056 25 H 0.279 0.721 26 H 0.410 0.590 27 H 0.422 0.578 28 H 0.324 0.676 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -23.211 0.004 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.183 4.183 3 Si 0.821 3.179 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.350 3.650 10 O -0.504 6.504 11 N -0.311 5.311 12 N -0.287 5.287 13 C 0.121 3.879 14 N -0.406 5.406 15 C 0.041 3.959 16 O -0.197 6.197 17 C 0.086 3.914 18 C -0.203 4.203 19 C -0.076 4.076 20 C -0.099 4.099 21 Cl -0.029 7.029 22 C -0.084 4.084 23 C -0.104 4.104 24 Cl -0.027 7.027 25 H 0.089 0.911 26 H 0.251 0.749 27 H 0.263 0.737 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.192 0.808 32 H 0.185 0.815 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.208 -23.871 0.003 23.872 hybrid contribution 0.139 1.650 0.004 1.656 sum 0.347 -22.221 0.007 22.224 Atomic orbital electron populations 1.70136 1.09353 1.29431 1.35205 1.26924 0.95631 1.04707 0.91086 0.84896 0.79289 0.75089 0.78642 1.17085 1.19243 1.19254 1.21252 0.94994 0.88655 1.54917 0.88938 1.18805 0.87280 0.82095 0.76799 1.90571 1.15392 1.86717 1.57684 1.45258 1.07318 0.95692 1.82872 1.44014 1.08127 0.96159 1.80365 1.22405 0.89572 0.85409 0.90521 1.69641 1.05160 1.34526 1.31254 1.21413 0.89147 0.79155 1.06167 1.86315 1.34575 1.11157 1.87641 1.19030 0.92363 0.84129 0.95862 1.21540 0.92288 0.99868 1.06626 1.21264 1.01644 0.89671 0.94984 1.20715 0.92659 0.87333 1.09145 1.98384 1.85393 1.22019 1.97107 1.20856 0.94265 0.95412 0.97888 1.20164 0.85552 0.92549 1.12125 1.98396 1.09868 1.97436 1.97049 0.91093 0.74916 0.73731 0.85875 0.86121 0.86134 0.80811 0.81467 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.44 11.83 21.84 0.26 -46.18 16 2 C 0.03 1.73 5.50 85.31 0.47 2.20 16 3 Si 1.00 38.45 29.56 68.60 2.03 40.47 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.56 -29.71 9.54 24.83 0.24 -29.47 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.54 29.39 7.86 86.36 0.68 30.07 16 10 O -0.62 -37.81 14.86 -4.30 -0.06 -37.88 16 11 N -0.56 -24.10 6.26 -176.63 -1.11 -25.21 16 12 N -0.55 -19.66 6.35 -50.05 -0.32 -19.98 16 13 C 0.40 12.24 8.02 137.83 1.11 13.34 16 14 N -0.77 -26.35 13.32 -49.85 -0.66 -27.01 16 15 C 0.12 2.43 5.25 71.24 0.37 2.81 16 16 O -0.29 -6.98 9.06 -92.93 -0.84 -7.82 16 17 C 0.13 2.69 6.68 22.51 0.15 2.84 16 18 C -0.18 -2.53 9.04 22.36 0.20 -2.32 16 19 C -0.06 -0.70 9.82 22.28 0.22 -0.48 16 20 C -0.07 -1.04 6.32 22.33 0.14 -0.90 16 21 Cl -0.06 -0.78 28.95 -2.72 -0.08 -0.86 16 22 C -0.06 -1.07 9.61 22.30 0.21 -0.86 16 23 C -0.08 -1.57 6.33 22.41 0.14 -1.43 16 24 Cl -0.06 -1.33 28.50 -2.72 -0.08 -1.40 16 25 H 0.28 14.35 8.29 -92.71 -0.77 13.58 16 26 H 0.41 16.00 6.72 -213.33 -1.43 14.57 16 27 H 0.42 14.71 8.03 -213.31 -1.71 13.00 16 28 H 0.32 11.26 6.69 -92.71 -0.62 10.64 16 29 H 0.12 1.75 7.65 -2.39 -0.02 1.73 16 30 H 0.12 1.75 7.67 -2.38 -0.02 1.73 16 31 H 0.17 1.41 6.30 -2.91 -0.02 1.40 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.87 329.30 0.53 -72.33 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -2.54 Total: 37.75 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 3.93 Total: 15.79 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -1.83 Total: -118.38 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.91 Total: -45.70 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.16 Total: -2.26 kcal Total: -72.87 0.53 -72.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002512153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.460 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.11 seconds