Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30217 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48497 * 109.47043 * 239.99765 * 3 2 1 5 5 H 1.48499 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47007 * 119.99780 * 3 2 1 7 7 C 1.40907 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99552 * 179.97438 * 7 2 1 9 9 C 1.41751 * 120.00023 * 0.02562 * 7 2 1 10 10 O 1.21909 * 119.99849 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99467 * 179.97438 * 9 7 2 12 12 N 1.29005 * 119.99666 * 179.97438 * 11 9 7 13 13 C 1.32176 * 119.99884 * 180.02562 * 12 11 9 14 14 C 1.40985 * 119.99925 * 179.97438 * 13 12 11 15 15 C 1.39445 * 120.92218 * 179.97438 * 14 13 12 16 16 O 1.32724 * 122.05448 * 179.97438 * 15 14 13 17 17 C 1.34791 * 123.72713 * 0.02678 * 16 15 14 18 18 C 1.39122 * 120.18906 * 179.97438 * 17 16 15 19 19 C 1.37905 * 120.07502 * 179.97438 * 18 17 16 20 20 C 1.38661 * 120.71809 * 0.02562 * 19 18 17 21 21 N 1.48022 * 119.91032 * 180.02562 * 20 19 18 22 22 O 1.31702 * 119.99788 * 359.97438 * 21 20 19 23 23 O 1.31693 * 119.99941 * 179.97438 * 21 20 19 24 24 C 1.37836 * 120.18037 * 359.97438 * 20 19 18 25 25 C 1.39464 * 119.61562 * 0.02562 * 24 20 19 26 26 C 1.47649 * 120.99521 * 180.02562 * 25 24 20 27 27 O 1.21695 * 121.67405 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99592 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00594 * 359.97438 * 11 9 7 30 30 H 1.08003 * 119.99884 * 0.02562 * 13 12 11 31 31 H 1.07995 * 118.97506 * 0.02562 * 15 14 13 32 32 H 1.08001 * 119.96330 * 0.25484 * 18 17 16 33 33 H 1.07998 * 119.63860 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.19812 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3022 0.0000 0.0000 3 14 2.2362 1.6177 0.0000 4 1 3.0899 1.6963 -1.2124 5 1 1.2712 2.7464 -0.0006 6 1 3.0899 1.6963 1.2126 7 6 2.0066 -1.2203 0.0005 8 1 3.0867 -1.2203 0.0001 9 6 1.2978 -2.4479 0.0005 10 8 0.0787 -2.4478 0.0005 11 7 1.9717 -3.6150 0.0005 12 7 1.3267 -4.7322 0.0010 13 6 1.9876 -5.8769 0.0016 14 6 1.2826 -7.0979 0.0026 15 6 1.9603 -8.3166 0.0027 16 8 1.3195 -9.4789 0.0042 17 6 -0.0235 -9.5930 0.0053 18 6 -0.6187 -10.8505 0.0063 19 6 -1.9931 -10.9646 0.0080 20 6 -2.7975 -9.8352 0.0082 21 7 -4.2708 -9.9784 0.0105 22 8 -4.8158 -11.1774 0.0120 23 8 -5.0365 -8.9070 0.0112 24 6 -2.2291 -8.5795 0.0072 25 6 -0.8403 -8.4517 0.0054 26 6 -0.1992 -7.1216 0.0049 27 8 -0.8547 -6.0963 0.0055 28 1 -0.4849 0.8401 -0.0004 29 1 2.9417 -3.6151 0.0002 30 1 3.0676 -5.8769 0.0020 31 1 3.0403 -8.3146 0.0023 32 1 -0.0038 -11.7383 0.0104 33 1 -2.4477 -11.9442 0.0084 34 1 -2.8554 -7.6996 0.0068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003649358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = 25.110962 kcal Electronic energy + Delta-G solvation = -26183.748587 eV Core-core repulsion = 21861.340514 eV Total energy + Delta-G solvation = -4322.408073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.073 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.17087 -39.87663 -39.20289 -38.59821 -37.89995 -35.90805 -34.60356 -33.55012 -32.78585 -32.06170 -31.94973 -29.75562 -27.41430 -26.83506 -25.10266 -24.34815 -22.78604 -22.09390 -20.43268 -19.73660 -19.27914 -18.54188 -18.07967 -17.64563 -16.75120 -16.62958 -16.27832 -16.10233 -15.74320 -15.63252 -15.04676 -14.73051 -14.51545 -14.34955 -14.30232 -13.92262 -13.52131 -13.07534 -13.04438 -12.87606 -11.99794 -11.70535 -11.59412 -11.50193 -11.33896 -11.12460 -10.88424 -10.84519 -10.54338 -10.17272 -10.12254 -9.97939 -9.34634 -9.29646 -9.05658 -8.02425 -7.12040 -6.59564 -5.13954 -0.98654 0.01433 0.44529 0.86034 0.96339 1.92084 2.16123 2.76619 2.97721 3.00939 3.04216 3.43847 3.53887 3.65136 3.76007 3.95154 4.05394 4.14379 4.22821 4.29262 4.66728 4.73985 4.91371 5.02710 5.12106 5.26101 5.30250 5.45043 5.50117 5.60946 5.76738 6.16217 6.23856 6.54245 6.87732 7.02141 7.50288 7.60815 7.75461 8.54945 8.64696 9.06646 10.20310 10.39559 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002542 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.638756 B =11012.785144 C =12510.581296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.086 3.914 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.534 3.466 10 O -0.527 6.527 11 N -0.509 5.509 12 N -0.119 5.119 13 C -0.078 4.078 14 C -0.139 4.139 15 C 0.050 3.950 16 O -0.206 6.206 17 C 0.207 3.793 18 C -0.144 4.144 19 C -0.002 4.002 20 C -0.046 4.046 21 N -0.013 5.013 22 O -0.176 6.176 23 O -0.166 6.166 24 C 0.044 3.956 25 C -0.222 4.222 26 C 0.408 3.592 27 O -0.384 6.384 28 H 0.280 0.720 29 H 0.364 0.636 30 H 0.113 0.887 31 H 0.209 0.791 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -20.928 0.010 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.140 4.140 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.344 3.656 10 O -0.404 6.404 11 N -0.255 5.255 12 N 0.053 4.947 13 C -0.273 4.273 14 C -0.143 4.143 15 C -0.021 4.021 16 O -0.108 6.108 17 C 0.159 3.841 18 C -0.163 4.163 19 C -0.021 4.021 20 C -0.133 4.133 21 N 0.466 4.534 22 O -0.368 6.368 23 O -0.360 6.360 24 C 0.025 3.975 25 C -0.225 4.225 26 C 0.283 3.717 27 O -0.256 6.256 28 H 0.091 0.909 29 H 0.201 0.799 30 H 0.130 0.870 31 H 0.226 0.774 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.311 -19.696 0.010 20.399 hybrid contribution 1.432 0.613 0.000 1.557 sum 6.742 -19.083 0.010 20.239 Atomic orbital electron populations 1.69791 1.07656 1.28885 1.29786 1.25894 0.94713 1.00894 0.92468 0.86201 0.79817 0.79722 0.79851 1.18821 1.20037 1.18813 1.20101 0.94412 0.89151 1.53072 0.90653 1.17388 0.88069 0.80296 0.79825 1.90786 1.13077 1.84616 1.51970 1.45950 1.08565 1.04164 1.66844 1.72115 1.30460 0.93231 0.98846 1.21793 0.95805 0.89490 1.20217 1.20238 0.93738 0.92974 1.07388 1.24351 0.96476 0.80178 1.01055 1.82601 1.17882 1.33499 1.76846 1.19604 0.80960 0.93784 0.89770 1.20455 0.93192 0.95780 1.06865 1.20959 0.92081 0.98730 0.90361 1.20159 0.77622 0.96239 1.19293 1.50317 1.04191 1.02866 0.96047 1.96258 1.78236 1.06631 1.55716 1.96339 1.60284 1.24091 1.55251 1.21108 0.94117 0.97074 0.85199 1.20879 0.93364 0.96351 1.11885 1.19954 0.88535 0.86776 0.76473 1.90920 1.66317 1.34550 1.33803 0.90861 0.79883 0.86997 0.77448 0.81548 0.81464 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.91 11.73 55.60 0.65 -20.26 16 2 C 0.09 2.23 5.51 -17.23 -0.09 2.14 16 3 Si 0.92 18.47 29.57 -169.99 -5.03 13.45 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.53 -13.99 9.34 -37.23 -0.35 -14.33 16 8 H 0.08 1.73 7.86 -52.48 -0.41 1.32 16 9 C 0.53 14.98 7.66 -14.92 -0.11 14.87 16 10 O -0.53 -17.42 15.21 5.00 0.08 -17.34 16 11 N -0.51 -11.51 5.88 29.15 0.17 -11.34 16 12 N -0.12 -2.64 8.77 31.09 0.27 -2.37 16 13 C -0.08 -1.24 10.42 -16.36 -0.17 -1.41 16 14 C -0.14 -1.91 5.93 -104.31 -0.62 -2.52 16 15 C 0.05 0.42 11.16 31.18 0.35 0.76 16 16 O -0.21 -1.62 9.59 8.31 0.08 -1.54 16 17 C 0.21 1.85 6.77 -38.46 -0.26 1.59 16 18 C -0.14 -0.88 9.99 -39.38 -0.39 -1.27 16 19 C 0.00 -0.02 9.55 -39.55 -0.38 -0.39 16 20 C -0.05 -0.51 6.88 -79.93 -0.55 -1.06 16 21 N -0.01 -0.17 4.98 33.97 0.17 0.00 16 22 O -0.18 -2.41 19.14 -31.57 -0.60 -3.01 16 23 O -0.17 -2.64 19.15 -31.56 -0.60 -3.25 16 24 C 0.04 0.56 9.18 -39.27 -0.36 0.20 16 25 C -0.22 -2.74 5.89 -104.80 -0.62 -3.36 16 26 C 0.41 6.67 7.18 -31.65 -0.23 6.44 16 27 O -0.38 -8.37 15.62 5.19 0.08 -8.29 16 28 H 0.28 7.13 8.28 -40.82 -0.34 6.79 16 29 H 0.36 6.57 8.42 -190.11 -1.60 4.97 16 30 H 0.11 1.32 7.96 -52.48 -0.42 0.90 16 31 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.17 0.85 7.56 -52.49 -0.40 0.45 16 34 H 0.17 2.39 7.30 -52.49 -0.38 2.01 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -38.21 329.90 -6.73 -44.94 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.19 Total: 2.40 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.78 Total: 1.64 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 1.27 Total: -33.97 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.97 Total: -33.43 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.21 -6.73 -44.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003649358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.051 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds