Wall clock time and date at job start Tue Mar 31 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 C 1.53002 * 109.47017 * 120.00205 * 2 1 3 5 5 C 1.52997 * 109.47330 * 64.99632 * 4 2 1 6 6 N 1.46501 * 109.46953 * 180.02562 * 5 4 2 7 7 C 1.34511 * 124.44176 * 269.99933 * 6 5 4 8 8 O 1.21433 * 125.71697 * 359.96750 * 7 6 5 9 9 C 1.47985 * 108.56403 * 180.02562 * 7 6 5 10 10 C 1.38653 * 134.09590 * 179.97438 * 9 7 6 11 11 C 1.38367 * 119.90862 * 180.02562 * 10 9 7 12 12 C 1.39592 * 120.30394 * 359.93331 * 11 10 9 13 13 C 1.47787 * 119.93283 * 180.02562 * 12 11 10 14 14 O 1.21491 * 120.00127 * 180.02562 * 13 12 11 15 15 O 1.34701 * 119.99788 * 0.04977 * 13 12 11 16 16 C 1.34778 * 116.99695 * 180.02562 * 15 13 12 17 17 H 1.07995 * 119.99885 * 359.97438 * 16 15 13 18 18 C 1.38930 * 119.99443 * 179.97438 * 16 15 13 19 19 N 1.31336 * 120.00598 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99697 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47011 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47321 * 119.99882 * 20 18 16 23 23 H 1.48501 * 109.47255 * 240.00066 * 20 18 16 24 24 C 1.39880 * 120.13834 * 0.09811 * 12 11 10 25 25 C 1.38385 * 119.60772 * 359.93545 * 24 12 11 26 26 C 1.34511 * 124.44213 * 90.00450 * 6 5 4 27 27 O 1.21447 * 125.69324 * 0.02562 * 26 6 5 28 28 H 1.08993 * 109.47426 * 300.00009 * 1 2 3 29 29 H 1.09006 * 109.47103 * 60.00192 * 1 2 3 30 30 H 1.09002 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47100 * 239.99670 * 2 1 3 32 32 H 1.08998 * 109.46817 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46918 * 300.00181 * 3 2 1 34 34 H 1.08993 * 109.46939 * 59.99693 * 3 2 1 35 35 H 1.09010 * 109.46686 * 304.99832 * 4 2 1 36 36 H 1.09001 * 109.47226 * 185.00373 * 4 2 1 37 37 H 1.08993 * 109.46928 * 60.00398 * 5 4 2 38 38 H 1.08997 * 109.47275 * 299.99838 * 5 4 2 39 39 H 1.08000 * 120.04034 * 0.06391 * 10 9 7 40 40 H 1.08001 * 119.85142 * 180.02562 * 11 10 9 41 41 H 0.96997 * 120.00087 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.19625 * 180.20591 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1230 -2.8859 2.3845 7 6 3.3244 -3.4830 2.4816 8 8 4.1631 -3.5349 1.6050 9 6 3.4521 -4.0673 3.8352 10 6 4.4445 -4.7829 4.4875 11 6 4.2504 -5.1991 5.7927 12 6 3.0597 -4.9006 6.4575 13 6 2.8613 -5.3487 7.8518 14 8 1.8254 -5.0900 8.4314 15 8 3.8293 -6.0434 8.4801 16 6 3.5844 -6.4222 9.7502 17 1 2.6456 -6.1662 10.2185 18 6 4.5398 -7.1420 10.4567 19 7 5.6814 -7.4538 9.8870 20 14 4.2007 -7.6665 12.2173 21 1 2.8527 -7.1942 12.6235 22 1 4.2563 -9.1473 12.3121 23 1 5.2238 -7.0742 13.1160 24 6 2.0534 -4.1797 5.8062 25 6 2.2461 -3.7636 4.5006 26 6 1.4282 -3.0060 3.5300 27 8 0.3144 -2.5663 3.7325 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2952 37 1 2.0698 -2.6550 0.3004 38 1 0.5489 -2.2724 1.1421 39 1 5.3679 -5.0146 3.9776 40 1 5.0242 -5.7560 6.3001 41 1 6.3485 -7.9560 10.3805 42 1 1.1332 -3.9455 6.3207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006787597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:11 Heat of formation + Delta-G solvation = -128.593897 kcal Electronic energy + Delta-G solvation = -27138.101381 eV Core-core repulsion = 23048.401603 eV Total energy + Delta-G solvation = -4089.699778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.54635 -41.27816 -39.88660 -39.50269 -37.94834 -37.35402 -36.74803 -34.41673 -33.54885 -32.40163 -30.45791 -28.04555 -27.92757 -26.52510 -26.05496 -24.36103 -23.48106 -22.18235 -21.07643 -20.95562 -19.99154 -19.42366 -18.62543 -17.98335 -17.74534 -17.39989 -16.68904 -16.66108 -16.34955 -16.17512 -16.15648 -15.76440 -15.25953 -15.18870 -15.00188 -14.82316 -14.68707 -14.07963 -14.06067 -13.87094 -13.65343 -13.25358 -13.15502 -13.00723 -12.88435 -12.45275 -12.40920 -12.21569 -12.11898 -12.03062 -11.80835 -11.66002 -11.54973 -11.51597 -11.24897 -10.94731 -10.74851 -10.45366 -10.42250 -8.61441 -6.35742 -1.34519 -0.36605 0.53880 1.09178 1.35779 1.36347 1.53697 1.64774 1.74419 1.97903 2.30113 2.48291 2.68096 2.97595 3.03865 3.38378 3.72207 3.75292 3.79802 3.88961 3.90152 4.03602 4.12515 4.29856 4.33580 4.39800 4.47638 4.60917 4.65942 4.74090 4.74904 4.83820 4.88209 5.00078 5.04013 5.06429 5.08634 5.16180 5.27485 5.32665 5.39326 5.43149 5.50023 5.75154 5.93096 6.43115 6.52804 6.83541 7.62016 8.58145 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.002271 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.197321 B =12324.479310 C =12899.347596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.129 4.129 5 C 0.104 3.896 6 N -0.570 5.570 7 C 0.587 3.413 8 O -0.471 6.471 9 C -0.124 4.124 10 C -0.031 4.031 11 C -0.037 4.037 12 C -0.083 4.083 13 C 0.426 3.574 14 O -0.575 6.575 15 O -0.219 6.219 16 C -0.416 4.416 17 H 0.085 0.915 18 C 0.003 3.997 19 N -0.886 5.886 20 Si 1.016 2.984 21 H -0.266 1.266 22 H -0.259 1.259 23 H -0.259 1.259 24 C 0.006 3.994 25 C -0.158 4.158 26 C 0.587 3.413 27 O -0.481 6.481 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.283 0.717 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 10.653 -19.790 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.167 4.167 5 C -0.015 4.015 6 N -0.312 5.312 7 C 0.377 3.623 8 O -0.343 6.343 9 C -0.128 4.128 10 C -0.049 4.049 11 C -0.055 4.055 12 C -0.084 4.084 13 C 0.276 3.724 14 O -0.474 6.474 15 O -0.126 6.126 16 C -0.491 4.491 17 H 0.103 0.897 18 C -0.200 4.200 19 N -0.522 5.522 20 Si 0.835 3.165 21 H -0.190 1.190 22 H -0.184 1.184 23 H -0.184 1.184 24 C -0.013 4.013 25 C -0.162 4.162 26 C 0.376 3.624 27 O -0.354 6.354 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.201 0.799 40 H 0.176 0.824 41 H 0.093 0.907 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.246 10.854 -20.057 23.035 hybrid contribution -0.331 -0.234 1.167 1.236 sum -3.577 10.620 -18.889 21.963 Atomic orbital electron populations 1.21936 0.94685 1.02184 1.02144 1.21030 0.96231 0.96529 0.96947 1.21827 1.01064 0.95388 1.02178 1.22002 1.01521 0.93491 0.99731 1.22172 1.01895 0.92776 0.84631 1.46594 1.17367 1.51645 1.15571 1.18224 0.80756 0.76466 0.86863 1.90798 1.42833 1.55837 1.44859 1.20809 0.96051 1.01413 0.94516 1.20988 0.98945 0.92684 0.92255 1.21951 0.95465 0.94309 0.93809 1.19319 0.96850 1.01360 0.90882 1.21398 0.82825 0.80028 0.88164 1.90626 1.29762 1.58561 1.68497 1.83844 1.41351 1.59479 1.27965 1.21567 1.04689 1.36705 0.86188 0.89715 1.26522 0.93885 0.94865 1.04680 1.69982 1.06735 1.35864 1.39613 0.84575 0.79074 0.78801 0.74019 1.18963 1.18356 1.18366 1.20565 0.98168 0.91189 0.91417 1.20225 0.96855 1.04048 0.95035 1.18204 0.84466 0.77705 0.82001 1.90798 1.17960 1.46983 1.79615 0.93318 0.91472 0.92248 0.89662 0.92623 0.91459 0.93145 0.92313 0.91584 0.87002 0.87613 0.79907 0.82385 0.90731 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.95 71.98 0.64 -1.09 16 2 C -0.09 -1.03 2.92 -10.79 -0.03 -1.06 16 3 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 4 C -0.13 -2.00 5.01 30.59 0.15 -1.85 16 5 C 0.10 1.71 5.50 86.38 0.47 2.18 16 6 N -0.57 -12.63 2.62 -762.82 -2.00 -14.63 16 7 C 0.59 13.84 8.03 86.87 0.70 14.53 16 8 O -0.47 -12.15 17.68 -3.51 -0.06 -12.21 16 9 C -0.12 -3.06 6.41 -19.91 -0.13 -3.19 16 10 C -0.03 -0.70 10.07 22.40 0.23 -0.48 16 11 C -0.04 -1.11 9.61 22.63 0.22 -0.89 16 12 C -0.08 -3.05 5.88 -20.03 -0.12 -3.16 16 13 C 0.43 20.90 7.83 70.35 0.55 21.46 16 14 O -0.57 -31.09 15.58 19.87 0.31 -30.78 16 15 O -0.22 -12.08 8.96 12.44 0.11 -11.97 16 16 C -0.42 -23.98 9.65 67.99 0.66 -23.32 16 17 H 0.09 5.01 6.86 -2.91 -0.02 4.99 16 18 C 0.00 0.16 5.50 84.93 0.47 0.63 16 19 N -0.89 -48.60 13.67 21.65 0.30 -48.31 16 20 Si 1.02 41.06 29.55 68.60 2.03 43.09 16 21 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 C 0.01 0.19 9.63 22.70 0.22 0.41 16 25 C -0.16 -4.42 6.39 -20.02 -0.13 -4.55 16 26 C 0.59 15.63 8.02 86.82 0.70 16.33 16 27 O -0.48 -14.81 17.67 -3.55 -0.06 -14.88 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.65 6.56 -2.39 -0.02 0.63 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.52 7.96 -2.39 -0.02 1.51 16 38 H 0.11 1.62 6.38 -2.39 -0.02 1.60 16 39 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.16 4.93 7.58 -2.91 -0.02 4.91 16 41 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.14 4.92 7.65 -2.91 -0.02 4.90 16 Total: -1.00 -69.13 370.13 6.94 -62.20 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.06 Total: 12.53 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 5.26 Total: 14.96 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.70 Total: -62.94 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: 0.30 Total: -69.84 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -69.13 6.94 -62.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006787597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.397 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds