Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48506 * 109.47219 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47442 * 119.99790 * 3 2 1 6 6 H 1.48499 * 109.46997 * 239.99955 * 3 2 1 7 7 C 1.38627 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99882 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00126 * 174.95095 * 9 7 2 11 11 C 1.38906 * 119.99940 * 185.17296 * 10 9 7 12 12 C 1.38003 * 120.00027 * 179.72362 * 11 10 9 13 13 C 1.38920 * 120.00102 * 0.57272 * 12 11 10 14 14 N 1.39987 * 120.00356 * 179.67782 * 13 12 11 15 15 C 1.34777 * 120.00003 * 35.18071 * 14 13 12 16 16 O 1.21290 * 120.00096 * 356.13026 * 15 14 13 17 17 C 1.50698 * 120.00045 * 176.13157 * 15 14 13 18 18 H 1.09005 * 109.64205 * 335.81633 * 17 15 14 19 19 C 1.53024 * 109.64213 * 215.18249 * 17 15 14 20 20 C 1.50073 * 110.14442 * 289.74928 * 19 17 15 21 21 C 1.29444 * 124.07561 * 342.87115 * 20 19 17 22 22 C 1.50063 * 124.07514 * 0.46849 * 21 20 19 23 23 C 1.53024 * 110.15003 * 342.86971 * 22 21 20 24 24 H 1.09005 * 109.63851 * 289.75003 * 23 22 21 25 25 C 1.50697 * 109.64529 * 169.12170 * 23 22 21 26 26 O 1.20823 * 120.00396 * 241.05515 * 25 23 22 27 27 O 1.34233 * 119.99953 * 61.05303 * 25 23 22 28 28 C 1.38919 * 119.99179 * 359.70196 * 13 12 11 29 29 C 1.38003 * 120.00407 * 359.97438 * 28 13 12 30 30 H 0.96997 * 119.99781 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99775 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.99848 * 180.26900 * 12 11 10 33 33 H 0.97000 * 119.99719 * 215.18299 * 14 13 12 34 34 H 1.09000 * 109.35977 * 49.95533 * 19 17 15 35 35 H 1.08999 * 109.35862 * 169.54488 * 19 17 15 36 36 H 1.07998 * 117.95846 * 162.89530 * 20 19 17 37 37 H 1.07995 * 117.96132 * 180.44518 * 21 20 19 38 38 H 1.09003 * 109.35660 * 222.66377 * 22 21 20 39 39 H 1.08997 * 109.36276 * 103.07699 * 22 21 20 40 40 H 0.96702 * 116.99911 * 179.97438 * 27 25 23 41 41 H 1.08001 * 119.99841 * 180.02562 * 28 13 12 42 42 H 1.08000 * 120.00477 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7465 -0.0006 5 1 3.1035 1.6965 1.2125 6 1 3.1035 1.6963 -1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5045 -0.1054 11 6 1.4353 -4.7346 -0.2200 12 6 2.1827 -5.8891 -0.3334 13 6 3.5703 -5.8223 -0.3210 14 7 4.3285 -6.9940 -0.4292 15 6 3.8946 -8.0084 -1.2033 16 8 2.8144 -7.9349 -1.7500 17 6 4.7514 -9.2341 -1.3894 18 1 5.7970 -8.9801 -1.2154 19 6 4.5779 -9.7718 -2.8115 20 6 3.2096 -10.3657 -2.9762 21 6 2.4400 -10.6987 -1.9900 22 6 2.8045 -10.5282 -0.5444 23 6 4.3143 -10.3235 -0.4020 24 1 4.8333 -11.2545 -0.6301 25 6 4.6364 -9.8907 1.0051 26 8 5.1619 -8.8209 1.2028 27 8 4.3394 -10.6938 2.0389 28 6 4.2052 -4.5926 -0.2006 29 6 3.4577 -3.4374 -0.0939 30 1 -0.4850 -0.8400 0.0004 31 1 0.3565 -4.7870 -0.2244 32 1 1.6890 -6.8451 -0.4269 33 1 5.1663 -7.0758 0.0529 34 1 4.7063 -8.9571 -3.5240 35 1 5.3295 -10.5378 -3.0023 36 1 2.8444 -10.5255 -3.9799 37 1 1.4755 -11.1255 -2.2222 38 1 2.5066 -11.4178 0.0107 39 1 2.2826 -9.6609 -0.1400 40 1 4.5653 -10.3733 2.9228 41 1 5.2840 -4.5404 -0.1914 42 1 3.9514 -2.4814 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016481104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = -134.387778 kcal Electronic energy + Delta-G solvation = -28264.713273 eV Core-core repulsion = 24174.762253 eV Total energy + Delta-G solvation = -4089.951020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.39766 -41.13106 -40.47493 -38.96310 -37.62775 -37.15350 -35.36434 -34.15926 -32.61503 -32.13145 -31.96160 -29.52836 -27.03337 -25.91973 -25.00560 -23.92527 -23.17715 -22.35474 -21.21318 -20.30962 -19.51583 -19.12123 -18.93542 -18.26336 -17.61048 -17.38796 -16.98450 -16.64930 -16.28975 -15.93772 -15.72916 -15.59820 -15.42920 -15.10125 -14.88360 -14.54636 -14.40596 -14.01772 -13.97810 -13.64566 -13.42897 -13.30019 -13.23133 -13.02187 -12.90429 -12.51952 -12.50837 -12.22851 -12.00314 -11.93065 -11.66651 -11.43035 -11.23590 -11.06171 -10.72539 -10.51132 -9.95876 -9.70809 -8.94913 -8.67972 -6.23926 0.40208 0.45655 1.12720 1.49078 1.50581 1.59478 1.66958 1.79421 2.02969 2.18019 2.36589 2.78694 3.09154 3.31402 3.38771 3.49441 3.67631 3.93435 4.03078 4.08084 4.12514 4.23408 4.34571 4.39144 4.39768 4.52750 4.56383 4.68371 4.78223 4.84474 4.92521 5.00002 5.06118 5.09004 5.19558 5.27638 5.40696 5.49322 5.58702 5.65576 5.75810 6.01855 6.14424 6.25057 6.58133 6.86236 6.94554 7.28688 7.61666 8.50170 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.002671 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.280090 B =10478.966456 C =10838.346182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.046 4.046 3 Si 1.146 2.854 4 H -0.275 1.275 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.095 0.905 9 O -0.251 6.251 10 C 0.108 3.892 11 C -0.188 4.188 12 C -0.073 4.073 13 C 0.070 3.930 14 N -0.645 5.645 15 C 0.505 3.495 16 O -0.549 6.549 17 C -0.088 4.088 18 H 0.125 0.875 19 C -0.070 4.070 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.078 4.078 23 C -0.064 4.064 24 H 0.162 0.838 25 C 0.485 3.515 26 O -0.537 6.537 27 O -0.508 6.508 28 C -0.086 4.086 29 C -0.216 4.216 30 H 0.259 0.741 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.422 0.578 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.428 0.572 41 H 0.153 0.847 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 -26.622 -0.766 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.241 4.241 3 Si 0.961 3.039 4 H -0.199 1.199 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.564 4.564 8 H 0.112 0.888 9 O -0.159 6.159 10 C 0.058 3.942 11 C -0.208 4.208 12 C -0.093 4.093 13 C -0.024 4.024 14 N -0.293 5.293 15 C 0.293 3.707 16 O -0.426 6.426 17 C -0.109 4.109 18 H 0.143 0.857 19 C -0.107 4.107 20 C -0.165 4.165 21 C -0.173 4.173 22 C -0.115 4.115 23 C -0.083 4.083 24 H 0.179 0.821 25 C 0.328 3.672 26 O -0.427 6.427 27 O -0.321 6.321 28 C -0.106 4.106 29 C -0.235 4.235 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.263 0.737 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.290 0.710 41 H 0.171 0.829 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.718 -24.802 -1.465 28.878 hybrid contribution -0.094 -1.117 0.900 1.437 sum 14.623 -25.919 -0.565 29.765 Atomic orbital electron populations 1.70715 1.07834 1.30016 1.46772 1.28447 0.96890 1.04978 0.93821 0.82585 0.73755 0.68667 0.78857 1.19940 1.18201 1.18420 1.22629 0.93834 0.82846 1.57105 0.88773 1.83657 1.36744 1.13077 1.82439 1.19709 0.91644 0.87176 0.95644 1.20276 0.99804 0.90215 1.10528 1.20806 0.92900 0.97210 0.98431 1.17509 0.90463 0.86760 1.07690 1.43558 1.25530 1.13135 1.47105 1.21240 0.87269 0.84806 0.77408 1.90715 1.23044 1.80202 1.48620 1.21369 1.01041 0.90705 0.97774 0.85712 1.20411 0.96597 1.01213 0.92497 1.21982 0.96723 0.98764 0.99060 1.21752 0.99850 1.02126 0.93565 1.20370 0.92212 1.02684 0.96266 1.21099 0.99632 1.01552 0.86066 0.82079 1.23517 0.73592 0.81475 0.88627 1.90591 1.41570 1.24124 1.86369 1.84475 1.77297 1.50275 1.20056 1.20849 1.00423 0.89491 0.99855 1.21123 0.92688 0.99770 1.09954 0.93253 0.86817 0.84847 0.73697 0.90778 0.85880 0.87307 0.87509 0.87886 0.93321 0.70979 0.82915 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.89 13.70 21.61 0.30 -58.60 16 2 C -0.05 -2.67 5.49 84.82 0.47 -2.21 16 3 Si 1.15 48.76 29.92 68.60 2.05 50.81 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.49 -29.20 9.48 67.91 0.64 -28.55 16 8 H 0.09 5.17 5.20 -2.91 -0.02 5.16 16 9 O -0.25 -15.49 9.16 -22.89 -0.21 -15.70 16 10 C 0.11 5.67 6.65 22.59 0.15 5.82 16 11 C -0.19 -8.91 9.98 22.37 0.22 -8.68 16 12 C -0.07 -3.01 8.68 22.38 0.19 -2.82 16 13 C 0.07 2.54 6.30 38.17 0.24 2.78 16 14 N -0.64 -18.01 4.60 -303.38 -1.40 -19.40 16 15 C 0.50 13.20 5.23 87.66 0.46 13.66 16 16 O -0.55 -18.28 11.05 -3.06 -0.03 -18.31 16 17 C -0.09 -1.36 2.20 -11.40 -0.03 -1.38 16 18 H 0.12 1.41 7.89 -2.38 -0.02 1.39 16 19 C -0.07 -0.93 5.43 29.66 0.16 -0.77 16 20 C -0.15 -2.45 8.76 27.04 0.24 -2.21 16 21 C -0.15 -2.72 8.86 27.04 0.24 -2.48 16 22 C -0.08 -1.28 4.75 29.66 0.14 -1.14 16 23 C -0.06 -0.81 2.48 -11.40 -0.03 -0.84 16 24 H 0.16 0.88 8.12 -2.38 -0.02 0.86 16 25 C 0.48 7.22 7.37 71.23 0.53 7.74 16 26 O -0.54 -10.70 13.50 21.97 0.30 -10.40 16 27 O -0.51 -5.36 13.37 -51.45 -0.69 -6.05 16 28 C -0.09 -3.15 9.96 22.38 0.22 -2.93 16 29 C -0.22 -9.77 9.16 22.38 0.20 -9.56 16 30 H 0.26 17.39 7.97 -92.71 -0.74 16.65 16 31 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 32 H 0.13 5.32 6.25 -2.91 -0.02 5.30 16 33 H 0.42 9.99 6.77 -92.71 -0.63 9.36 16 34 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.11 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.14 6.96 -2.39 -0.02 1.12 16 40 H 0.43 1.57 9.10 -74.06 -0.67 0.90 16 41 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.13 5.86 5.63 -2.91 -0.02 5.85 16 Total: -1.00 -82.08 347.93 4.19 -77.89 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.18 Total: 33.34 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.05 Total: -33.57 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.10 Total: -78.00 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.63 Total: -50.46 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -82.08 4.19 -77.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016481104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.500 kcal (2) G-P(sol) polarization free energy of solvation -82.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds