Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34820 * 125.64200 * 2 1 4 4 C 1.40787 * 107.07320 * 179.78395 * 3 2 1 5 5 C 1.36259 * 106.72319 * 0.35741 * 4 3 2 6 6 C 1.47103 * 125.96100 * 179.91029 * 5 4 3 7 7 N 1.30493 * 125.48479 * 179.97438 * 6 5 4 8 8 C 1.31332 * 116.96721 * 180.22544 * 7 6 5 9 9 C 1.50699 * 122.06221 * 179.75641 * 8 7 6 10 10 C 1.50699 * 109.46725 * 304.71229 * 9 8 7 11 11 O 1.21289 * 120.00149 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99556 * 180.02562 * 10 9 8 13 13 C 1.37103 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99556 * 17.72174 * 13 12 10 15 15 C 1.38944 * 119.99934 * 197.71924 * 13 12 10 16 16 N 1.31413 * 119.99977 * 21.39885 * 15 13 12 17 17 Si 1.86805 * 119.99875 * 201.39185 * 15 13 12 18 18 H 1.48508 * 109.46692 * 60.00374 * 17 15 13 19 19 H 1.48498 * 109.47140 * 179.97438 * 17 15 13 20 20 H 1.48489 * 109.47332 * 300.00546 * 17 15 13 21 21 C 1.46496 * 120.00249 * 359.97438 * 12 10 9 22 22 C 1.47204 * 109.47161 * 84.23468 * 21 12 10 23 23 N 9.96346 * 107.41555 * 352.43080 * 4 1 2 24 24 C 1.33683 * 115.87233 * 359.48253 * 8 7 6 25 25 S 1.76174 * 125.48315 * 359.69086 * 6 5 4 26 26 O 1.34282 * 125.63305 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47619 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46383 * 299.97409 * 1 2 3 29 29 H 1.09000 * 109.47234 * 59.96975 * 1 2 3 30 30 H 1.07996 * 126.46355 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.63858 * 180.25021 * 4 3 2 32 32 H 1.08996 * 109.47368 * 64.71215 * 9 8 7 33 33 H 1.09000 * 109.47329 * 184.71264 * 9 8 7 34 34 H 0.97001 * 119.99532 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47494 * 204.23084 * 21 12 10 36 36 H 1.09003 * 109.47302 * 324.23260 * 21 12 10 37 37 H 1.08005 * 125.86182 * 180.26935 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0956 0.0000 4 6 3.6272 0.6473 0.0051 5 6 3.5834 -0.7145 -0.0002 6 6 4.7456 -1.6163 0.0004 7 7 4.6928 -2.9201 -0.0042 8 6 5.8382 -3.5626 0.0019 9 6 5.9111 -5.0678 0.0030 10 6 5.1213 -5.6081 1.1672 11 8 4.5554 -4.8458 1.9220 12 7 5.0448 -6.9383 1.3701 13 6 4.3258 -7.4299 2.4290 14 1 3.5986 -6.8041 2.9249 15 6 4.5329 -8.7332 2.8640 16 7 5.6570 -9.3507 2.5778 17 14 3.2133 -9.6075 3.8560 18 1 1.9655 -9.6905 3.0549 19 1 3.6752 -10.9774 4.1952 20 1 2.9498 -8.8497 5.1055 21 6 5.7288 -7.8590 0.4587 22 6 7.1346 -8.0033 0.8708 23 7 8.2186 -8.1156 1.1887 24 6 6.9354 -2.7989 0.0014 25 16 6.4330 -1.1097 0.0005 26 8 2.2894 -1.0914 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5134 0.8902 29 1 -0.3634 0.5143 -0.8897 30 1 1.9608 2.1234 0.0004 31 1 4.5141 1.2636 0.0102 32 1 5.4949 -5.4524 -0.9281 33 1 6.9512 -5.3812 0.0928 34 1 5.8016 -10.2604 2.8818 35 1 5.2392 -8.8323 0.4904 36 1 5.6864 -7.4638 -0.5563 37 1 7.9548 -3.1559 0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058197501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 71.794147 kcal Electronic energy + Delta-G solvation = -24607.945521 eV Core-core repulsion = 20866.147748 eV Total energy + Delta-G solvation = -3741.797773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.078 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.61826 -39.81281 -38.37788 -35.73577 -34.32681 -33.32878 -32.97691 -31.93902 -31.13480 -28.41573 -27.37981 -27.24694 -24.77053 -23.61331 -21.97430 -20.77031 -19.77752 -18.92433 -18.03266 -17.72673 -16.80618 -16.40042 -16.25710 -16.21158 -15.16631 -14.79043 -14.36634 -14.09889 -13.80748 -13.73256 -13.49875 -13.16023 -13.10282 -13.01439 -12.98267 -12.82347 -12.49992 -12.14447 -11.99886 -11.82054 -11.51525 -11.38049 -11.15313 -11.09279 -10.56854 -10.41836 -10.27741 -10.13914 -9.61602 -9.57492 -9.21971 -9.03099 -8.55034 -8.00684 -7.88802 -6.47613 -3.96058 0.33569 1.10311 1.68431 1.77271 2.40796 2.93272 3.14074 3.17829 3.23960 3.27643 3.59152 3.81053 3.93986 3.98447 4.14535 4.60337 4.80757 4.81230 4.91609 4.94622 5.17843 5.20816 5.22854 5.25506 5.38457 5.47502 5.60786 5.63826 5.72856 5.77529 5.85788 5.92667 6.12897 6.26481 6.33313 6.52073 7.00560 7.50427 7.87790 7.95405 8.32471 8.72166 9.04450 9.22677 9.78192 10.58882 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003380 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.096461 B = 8281.509578 C = 9989.871900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.004 3.996 3 C -0.213 4.213 4 C -0.173 4.173 5 C 0.062 3.938 6 C 0.125 3.875 7 N -0.411 5.411 8 C 0.107 3.893 9 C -0.071 4.071 10 C 0.464 3.536 11 O -0.552 6.552 12 N -0.446 5.446 13 C -0.310 4.310 14 H 0.107 0.893 15 C 0.031 3.969 16 N -0.880 5.880 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.220 3.780 22 C 0.246 3.754 23 N -0.474 5.474 24 C -0.246 4.246 25 S 0.107 5.893 26 O -0.145 6.145 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.273 0.727 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 16.173 -10.363 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.233 4.233 4 C -0.196 4.196 5 C 0.008 3.992 6 C -0.150 4.150 7 N -0.124 5.124 8 C -0.026 4.026 9 C -0.114 4.114 10 C 0.251 3.749 11 O -0.433 6.433 12 N -0.168 5.168 13 C -0.437 4.437 14 H 0.125 0.875 15 C -0.172 4.172 16 N -0.519 5.519 17 Si 0.753 3.247 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.092 3.908 22 C -0.073 4.073 23 N -0.154 5.154 24 C -0.385 4.385 25 S 0.362 5.638 26 O -0.040 6.040 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.997 16.568 -9.458 19.312 hybrid contribution -0.579 -1.465 0.624 1.695 sum -3.576 15.103 -8.835 17.859 Atomic orbital electron populations 1.20372 0.84756 1.04574 1.03601 1.22728 0.94310 0.84019 1.03833 1.21405 0.92031 0.99560 1.10267 1.21731 0.98815 0.92198 1.06879 1.18885 0.80718 0.90702 1.08927 1.24173 0.93212 0.91151 1.06507 1.66512 1.29180 1.04556 1.12158 1.19596 0.85958 0.97205 0.99818 1.20391 1.02278 0.88082 1.00619 1.19756 0.85147 0.82549 0.87422 1.90593 1.48161 1.56188 1.48334 1.43586 1.44863 1.02890 1.25456 1.19659 1.17144 0.96927 1.09973 0.87527 1.25241 0.96578 0.97591 0.97765 1.69848 1.21373 1.14181 1.46532 0.85978 0.80721 0.78071 0.79912 1.19711 1.21046 1.19888 1.18754 0.82108 0.98625 0.91290 1.29347 0.94323 0.91729 0.91862 1.80865 1.14991 1.09973 1.09547 1.26839 1.04181 0.94136 1.13297 1.84524 1.00831 1.07855 1.70639 1.84204 1.15224 1.34360 1.70174 0.90135 0.89386 0.89447 0.82863 0.82890 0.87897 0.88476 0.91653 0.85412 0.89853 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.41 36.01 0.37 -0.21 16 2 C 0.00 0.05 7.31 -35.52 -0.26 -0.21 16 3 C -0.21 -2.27 10.78 -39.83 -0.43 -2.70 16 4 C -0.17 -2.10 10.64 -39.33 -0.42 -2.52 16 5 C 0.06 0.96 7.24 -36.70 -0.27 0.69 16 6 C 0.12 2.10 7.50 -14.53 -0.11 1.99 16 7 N -0.41 -8.07 9.69 -7.73 -0.07 -8.15 16 8 C 0.11 1.92 5.60 -84.40 -0.47 1.45 16 9 C -0.07 -1.25 4.78 -29.04 -0.14 -1.39 16 10 C 0.46 10.79 7.52 -10.98 -0.08 10.71 16 11 O -0.55 -15.14 15.08 5.55 0.08 -15.06 16 12 N -0.45 -10.50 2.60 -117.93 -0.31 -10.81 16 13 C -0.31 -8.11 9.32 -14.93 -0.14 -8.25 16 14 H 0.11 2.98 7.39 -52.48 -0.39 2.60 16 15 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 16 N -0.88 -22.27 9.48 55.50 0.53 -21.74 16 17 Si 0.93 19.96 29.60 -169.99 -5.03 14.93 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.22 4.30 4.91 -6.83 -0.03 4.26 16 22 C 0.25 5.31 12.95 -20.78 -0.27 5.04 16 23 N -0.47 -11.02 18.53 42.13 0.78 -10.23 16 24 C -0.25 -3.59 11.01 29.14 0.32 -3.27 16 25 S 0.11 1.39 23.19 -107.50 -2.49 -1.10 16 26 O -0.14 -2.35 10.68 4.45 0.05 -2.30 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.10 1.52 7.42 -51.93 -0.39 1.13 16 33 H 0.10 1.55 7.38 -51.93 -0.38 1.16 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.13 2.57 6.46 -51.93 -0.34 2.23 16 36 H 0.08 1.22 6.68 -51.93 -0.35 0.87 16 37 H 0.18 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -34.63 347.24 -6.75 -41.38 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.51 Total: 1.56 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -2.01 Total: 6.28 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.93 Total: -50.93 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.13 Total: -17.36 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.63 -6.75 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058197501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.173 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds