Wall clock time and date at job start Tue Mar 31 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52999 * 109.46963 * 154.72290 * 12 11 9 15 15 C 1.50697 * 109.47122 * 294.99627 * 14 12 11 16 16 C 1.38262 * 119.99076 * 90.00107 * 15 14 12 17 17 C 1.38218 * 120.05857 * 180.02562 * 16 15 14 18 18 C 1.38222 * 120.02475 * 359.95499 * 17 16 15 19 19 C 1.38443 * 119.97028 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02220 * 179.97438 * 19 18 17 21 21 C 1.38179 * 119.98622 * 269.72801 * 15 14 12 22 22 C 1.50701 * 109.46815 * 274.72090 * 12 11 9 23 23 C 1.38264 * 119.98509 * 319.72696 * 22 12 11 24 24 C 1.38226 * 120.04736 * 179.72839 * 23 22 12 25 25 C 1.38219 * 120.02517 * 0.54720 * 24 23 22 26 26 C 1.38443 * 119.97839 * 359.72757 * 25 24 23 27 27 F 1.35091 * 120.02800 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98620 * 140.00297 * 22 12 11 29 29 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 31 31 H 1.08997 * 109.47492 * 54.99915 * 14 12 11 32 32 H 1.09007 * 109.47243 * 174.99697 * 14 12 11 33 33 H 1.08008 * 119.96806 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.99361 * 179.97438 * 17 16 15 35 35 H 1.07992 * 120.01731 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.01281 * 359.97438 * 21 15 14 37 37 H 1.07990 * 119.98032 * 359.97438 * 23 22 12 38 38 H 1.07999 * 119.99126 * 180.27616 * 24 23 22 39 39 H 1.08003 * 120.01538 * 179.70662 * 25 24 23 40 40 H 1.08003 * 120.01248 * 0.02562 * 28 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 1 0.3058 -4.8073 -0.5944 14 6 2.0938 -6.0088 -0.6205 15 6 2.3506 -5.6897 -2.0708 16 6 3.4491 -4.9296 -2.4272 17 6 3.6857 -4.6357 -3.7569 18 6 2.8245 -5.1023 -4.7322 19 6 1.7244 -5.8639 -4.3765 20 9 0.8817 -6.3201 -5.3289 21 6 1.4911 -6.1618 -3.0444 22 6 0.8583 -5.2963 1.4081 23 6 1.7697 -5.0986 2.4289 24 6 1.4403 -5.4414 3.7268 25 6 0.2035 -5.9927 4.0039 26 6 -0.7078 -6.1964 2.9817 27 9 -1.9171 -6.7348 3.2514 28 6 -0.3787 -5.8473 1.6826 29 1 -0.4849 0.8400 -0.0004 30 1 2.9191 -3.6476 0.0002 31 1 3.0423 -6.0571 -0.0857 32 1 1.5845 -6.9695 -0.5445 33 1 4.1230 -4.5652 -1.6659 34 1 4.5439 -4.0415 -4.0341 35 1 3.0097 -4.8730 -5.7711 36 1 0.6358 -6.7595 -2.7662 37 1 2.7381 -4.6724 2.2126 38 1 2.1512 -5.2824 4.5241 39 1 -0.0519 -6.2649 5.0173 40 1 -1.0885 -6.0062 0.8843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095942150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:46 Heat of formation + Delta-G solvation = -87.583878 kcal Electronic energy + Delta-G solvation = -27526.803134 eV Core-core repulsion = 23327.794169 eV Total energy + Delta-G solvation = -4199.008966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.77577 -48.64331 -39.65635 -38.67344 -37.12342 -34.73941 -32.51636 -31.72116 -30.92795 -30.35950 -29.99095 -27.94502 -26.15131 -23.99273 -22.65702 -22.43793 -21.59775 -20.83298 -19.49019 -17.55150 -17.02540 -16.97079 -16.24930 -16.06326 -16.02563 -15.86634 -15.47640 -15.34748 -15.31186 -14.54514 -14.40127 -14.12216 -13.81440 -13.49206 -13.25831 -13.08555 -12.90703 -12.49735 -12.29090 -12.08444 -11.98361 -11.81120 -11.60176 -11.42519 -11.12370 -11.09657 -11.05920 -10.86679 -10.55499 -10.48886 -10.24789 -8.92774 -8.86048 -8.68670 -8.50879 -8.35417 -7.67602 -7.61920 -6.21150 -4.67051 1.26574 1.32443 1.47490 1.51433 3.11405 3.18568 3.21222 3.68030 3.86218 4.07438 4.31568 4.44208 4.56556 4.68574 4.74845 4.88024 5.00073 5.10538 5.11993 5.28200 5.32727 5.40769 5.42802 5.55871 5.57109 5.66817 5.76594 5.84637 5.99285 6.11690 6.16412 6.19204 6.24899 6.34975 6.39711 6.43197 6.57593 6.63174 6.86779 7.01480 7.17887 7.40213 7.83649 8.00245 8.27172 8.99949 9.46372 10.57121 10.75682 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.006241 B = 0.005816 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4485.432899 B = 4813.020515 C = 8124.681918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.754 5.754 12 C 0.196 3.804 13 H 0.090 0.910 14 C -0.084 4.084 15 C -0.040 4.040 16 C -0.112 4.112 17 C -0.087 4.087 18 C -0.161 4.161 19 C 0.096 3.904 20 F -0.145 7.145 21 C -0.151 4.151 22 C -0.046 4.046 23 C -0.108 4.108 24 C -0.096 4.096 25 C -0.164 4.164 26 C 0.092 3.908 27 F -0.146 7.146 28 C -0.141 4.141 29 H 0.268 0.732 30 H 0.379 0.621 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.001 -12.608 -0.590 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.362 3.638 10 O -0.456 6.456 11 N -0.409 5.409 12 C 0.089 3.911 13 H 0.108 0.892 14 C -0.122 4.122 15 C -0.040 4.040 16 C -0.130 4.130 17 C -0.105 4.105 18 C -0.180 4.180 19 C 0.077 3.923 20 F -0.123 7.123 21 C -0.170 4.170 22 C -0.048 4.048 23 C -0.126 4.126 24 C -0.114 4.114 25 C -0.183 4.183 26 C 0.073 3.927 27 F -0.125 7.125 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.211 0.789 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.826 -12.516 -0.629 14.270 hybrid contribution 0.368 0.857 -0.084 0.936 sum 7.195 -11.659 -0.713 13.719 Atomic orbital electron populations 1.70011 1.07011 1.27242 1.35173 1.25681 0.94575 1.00203 0.92683 0.86426 0.80176 0.81664 0.78812 1.19780 1.20505 1.18932 1.20822 0.93440 0.89304 1.54462 0.91553 1.18196 0.87233 0.82260 0.76122 1.90621 1.14054 1.86502 1.54431 1.46233 1.08200 1.04050 1.82401 1.19392 0.96553 0.84981 0.90154 0.89210 1.20938 1.01188 0.98956 0.91112 1.19582 0.93825 0.95764 0.94858 1.21083 0.97737 0.97921 0.96271 1.20968 0.98877 0.98182 0.92495 1.21076 0.95326 1.00720 1.00889 1.17661 0.90232 0.98676 0.85780 1.91477 1.70012 1.87336 1.63515 1.20991 1.01373 1.03611 0.90989 1.20351 0.92583 0.94462 0.97408 1.21005 1.00230 0.99275 0.92137 1.20933 0.95737 0.97808 0.96899 1.21013 0.94677 1.04097 0.98537 1.17656 0.81335 0.99531 0.94217 1.91459 1.42559 1.83831 1.94653 1.20990 0.97954 1.01821 0.95229 0.92126 0.78904 0.90065 0.89868 0.85352 0.85135 0.85213 0.84999 0.85493 0.85477 0.85438 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.62 11.83 55.55 0.66 -21.96 16 2 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 3 Si 0.90 19.71 29.56 -169.99 -5.02 14.69 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.58 9.54 -35.63 -0.34 -14.92 16 8 H 0.07 1.62 7.85 -52.49 -0.41 1.20 16 9 C 0.56 14.78 7.71 -12.99 -0.10 14.68 16 10 O -0.57 -17.80 14.68 5.20 0.08 -17.72 16 11 N -0.75 -14.82 3.77 -56.34 -0.21 -15.03 16 12 C 0.20 3.34 2.16 -69.08 -0.15 3.19 16 13 H 0.09 1.81 7.43 -51.93 -0.39 1.43 16 14 C -0.08 -1.05 4.87 -27.88 -0.14 -1.19 16 15 C -0.04 -0.54 4.95 -104.64 -0.52 -1.06 16 16 C -0.11 -1.43 9.09 -39.58 -0.36 -1.79 16 17 C -0.09 -1.07 10.04 -39.59 -0.40 -1.46 16 18 C -0.16 -2.08 10.03 -39.51 -0.40 -2.47 16 19 C 0.10 1.37 7.30 -39.42 -0.29 1.08 16 20 F -0.14 -2.13 17.27 2.25 0.04 -2.09 16 21 C -0.15 -2.10 9.68 -39.51 -0.38 -2.48 16 22 C -0.05 -0.77 4.91 -104.64 -0.51 -1.28 16 23 C -0.11 -1.64 9.32 -39.58 -0.37 -2.01 16 24 C -0.10 -1.31 10.04 -39.59 -0.40 -1.70 16 25 C -0.16 -2.32 10.03 -39.51 -0.40 -2.72 16 26 C 0.09 1.47 7.30 -39.42 -0.29 1.18 16 27 F -0.15 -2.35 17.27 2.25 0.04 -2.32 16 28 C -0.14 -2.35 9.65 -39.51 -0.38 -2.73 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 30 H 0.38 6.38 7.80 -40.82 -0.32 6.06 16 31 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.13 1.42 7.57 -52.48 -0.40 1.03 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 1.77 7.72 -52.49 -0.41 1.36 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.13 2.09 8.04 -52.48 -0.42 1.67 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -34.00 358.99 -8.95 -42.96 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.43 Total: 9.44 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -5.51 Total: -13.38 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -36.99 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.40 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.00 -8.95 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.628 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds