Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33387 * 125.20132 * 2 1 4 4 C 1.38430 * 114.91858 * 180.20546 * 3 2 1 5 5 C 1.50696 * 122.54019 * 179.76281 * 4 3 2 6 6 H 1.09004 * 109.47306 * 219.71304 * 5 4 3 7 7 C 1.53000 * 109.47170 * 99.71577 * 5 4 3 8 8 N 1.46498 * 109.46927 * 339.71252 * 5 4 3 9 9 S 1.65602 * 119.99612 * 214.72190 * 8 5 4 10 10 O 1.42109 * 104.27511 * 181.34803 * 9 8 5 11 11 O 1.42098 * 104.28120 * 309.20801 * 9 8 5 12 12 C 1.81394 * 104.44973 * 65.28269 * 9 8 5 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 9 8 14 14 C 1.53002 * 109.47130 * 179.97438 * 13 12 9 15 15 C 1.50692 * 109.47012 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00231 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00269 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47223 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47323 * 120.00013 * 19 17 15 22 22 H 1.48497 * 109.47261 * 240.00008 * 19 17 15 23 23 C 1.33394 * 114.91762 * 359.49580 * 4 3 2 24 24 C 1.50695 * 125.20282 * 180.28989 * 23 4 3 25 25 S 1.75875 * 125.20116 * 179.68804 * 2 1 3 26 26 H 1.08994 * 109.47432 * 180.28385 * 1 2 3 27 27 H 1.08996 * 109.47044 * 300.28488 * 1 2 3 28 28 H 1.09002 * 109.46842 * 60.28312 * 1 2 3 29 29 H 1.07998 * 122.54146 * 359.97286 * 3 2 1 30 30 H 1.09004 * 109.46783 * 300.00047 * 7 5 4 31 31 H 1.09003 * 109.47308 * 59.99683 * 7 5 4 32 32 H 1.09005 * 109.47224 * 180.02562 * 7 5 4 33 33 H 0.97001 * 120.00384 * 35.00668 * 8 5 4 34 34 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 35 35 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 36 36 H 1.08994 * 109.46789 * 299.99279 * 13 12 9 37 37 H 1.08993 * 109.47045 * 59.99537 * 13 12 9 38 38 H 1.09003 * 109.47270 * 300.00013 * 14 13 12 39 39 H 1.09000 * 109.46896 * 60.00012 * 14 13 12 40 40 H 0.96993 * 120.00008 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47255 * 89.99777 * 24 23 4 42 42 H 1.08995 * 109.47534 * 210.00207 * 24 23 4 43 43 H 1.09004 * 109.47191 * 329.99936 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9481 -0.0105 6 1 5.4868 1.6760 -0.6696 7 6 5.1928 2.1596 1.4090 8 7 4.0423 3.1859 -0.4896 9 16 4.9230 4.2563 -1.3956 10 8 4.0232 5.3275 -1.6454 11 8 6.1112 4.4581 -0.6429 12 6 5.2860 3.3592 -2.9299 13 6 6.1054 4.2539 -3.8622 14 6 6.4121 3.4969 -5.1560 15 6 7.2186 4.3783 -6.0744 16 1 7.4861 5.3782 -5.7661 17 6 7.6160 3.9079 -7.3081 18 7 7.2907 2.6901 -7.6835 19 14 8.6163 5.0002 -8.4463 20 1 8.8489 6.3137 -7.7938 21 1 9.9215 4.3525 -8.7332 22 1 7.8743 5.2025 -9.7167 23 6 3.9751 -0.4478 0.0025 24 6 5.3860 -0.9772 0.0059 25 16 2.5209 -1.4371 0.0078 26 1 -0.3634 -1.0276 0.0051 27 1 -0.3633 0.5182 0.8874 28 1 -0.3633 0.5094 -0.8925 29 1 1.8669 2.0895 -0.0004 30 1 4.3683 2.4317 2.0681 31 1 5.6541 1.2386 1.7655 32 1 5.9334 2.9594 1.4047 33 1 3.1171 3.3805 -0.2727 34 1 5.8542 2.4583 -2.6982 35 1 4.3519 3.0837 -3.4195 36 1 5.5369 5.1545 -4.0938 37 1 7.0395 4.5296 -3.3728 38 1 6.9808 2.5964 -4.9240 39 1 5.4781 3.2209 -5.6455 40 1 7.5699 2.3593 -8.5514 41 1 5.7258 -1.0993 1.0343 42 1 5.4138 -1.9407 -0.5028 43 1 6.0390 -0.2743 -0.5115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096405209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -90.238918 kcal Electronic energy + Delta-G solvation = -24071.716462 eV Core-core repulsion = 20561.876703 eV Total energy + Delta-G solvation = -3509.839759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.106 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19720 -38.19852 -37.07160 -36.47542 -36.24996 -34.17256 -33.97752 -30.52350 -30.24868 -29.66752 -25.93233 -25.62770 -24.50843 -22.54375 -22.27200 -20.39542 -19.37639 -18.81014 -18.54083 -18.01813 -17.17993 -17.07393 -16.47237 -16.39685 -15.79755 -15.50322 -15.30316 -14.60490 -14.50801 -14.33267 -14.15058 -14.06784 -13.85475 -13.72710 -13.54716 -13.37642 -13.22216 -13.14782 -12.99909 -12.91610 -12.78328 -12.67833 -12.61846 -12.39733 -12.34640 -12.16655 -11.98582 -11.76054 -11.53653 -11.35983 -11.13766 -10.58278 -10.52823 -9.33752 -9.21690 -8.22932 -6.33886 -0.76113 0.05541 0.68476 1.03315 1.39567 1.40336 1.53598 1.65393 1.80429 2.39688 2.72870 3.10677 3.21121 3.63844 3.76452 3.83032 3.90302 4.04571 4.24470 4.27870 4.32225 4.39380 4.47402 4.53731 4.64710 4.75287 4.75917 4.78862 4.91722 4.94317 4.99836 5.06143 5.09123 5.14320 5.28989 5.34748 5.45235 5.48274 5.61729 5.62325 5.79251 6.05703 6.19410 6.81960 7.35545 8.88762 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.002974 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.414524 B = 9412.209294 C =10249.587818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.144 4.144 4 C -0.116 4.116 5 C 0.208 3.792 6 H 0.098 0.902 7 C -0.164 4.164 8 N -1.104 6.104 9 S 2.631 3.369 10 O -0.991 6.991 11 O -0.980 6.980 12 C -0.612 4.612 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.181 4.181 24 C -0.093 4.093 25 S 0.097 5.903 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.423 0.577 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 -9.485 20.584 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.302 4.302 3 C -0.174 4.174 4 C -0.130 4.130 5 C 0.099 3.901 6 H 0.116 0.884 7 C -0.223 4.223 8 N -0.865 5.865 9 S 2.725 3.275 10 O -0.981 6.981 11 O -0.970 6.970 12 C -0.742 4.742 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.589 4.589 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.299 4.299 24 C -0.151 4.151 25 S 0.362 5.638 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.498 -10.332 20.710 25.843 hybrid contribution 0.251 1.283 -1.267 1.820 sum -11.247 -9.048 19.443 24.216 Atomic orbital electron populations 1.20420 0.86249 1.03567 1.03892 1.24721 1.01062 0.95289 1.09086 1.19929 0.92144 1.00061 1.05234 1.18812 0.94728 0.93528 1.05902 1.19474 0.92745 0.80496 0.97429 0.88438 1.22283 1.01817 1.03404 0.94790 1.55511 1.26837 1.35301 1.68851 1.04254 0.73380 0.73912 0.75914 1.93538 1.64885 1.53072 1.86616 1.93544 1.50073 1.84850 1.68520 1.30531 1.11113 1.13708 1.18893 1.21309 0.98725 0.97761 0.96667 1.18956 0.95449 0.94962 0.91320 1.21767 1.34346 1.00907 1.01898 0.92132 1.25935 0.97290 0.96547 0.99788 1.70077 1.47426 1.17850 1.21613 0.85429 0.78311 0.79083 0.78441 1.18741 1.20185 1.20276 1.24440 1.00222 0.95646 1.09593 1.20535 0.88706 1.01886 1.03992 1.84201 0.96212 1.09648 1.73744 0.90859 0.89363 0.89924 0.83369 0.91515 0.89803 0.91714 0.73874 0.83831 0.83986 0.91629 0.91253 0.97787 0.98106 0.92650 0.88936 0.90596 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.38 71.24 0.74 -0.21 16 2 C -0.18 -3.06 6.51 24.59 0.16 -2.90 16 3 C -0.14 -2.53 9.28 21.22 0.20 -2.33 16 4 C -0.12 -2.16 4.98 -20.92 -0.10 -2.26 16 5 C 0.21 3.95 2.54 44.24 0.11 4.07 16 6 H 0.10 1.76 6.03 -2.39 -0.01 1.74 16 7 C -0.16 -2.89 9.49 71.98 0.68 -2.21 16 8 N -1.10 -22.75 5.22 -172.53 -0.90 -23.65 16 9 S 2.63 74.26 5.38 -56.49 -0.30 73.96 16 10 O -0.99 -33.94 18.08 -127.65 -2.31 -36.24 16 11 O -0.98 -32.39 17.07 -127.65 -2.18 -34.57 16 12 C -0.61 -18.50 5.97 71.98 0.43 -18.07 16 13 C -0.11 -4.28 5.16 30.60 0.16 -4.13 16 14 C 0.03 1.62 4.97 29.85 0.15 1.77 16 15 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 19 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 C -0.18 -3.21 6.50 24.59 0.16 -3.05 16 24 C -0.09 -1.30 9.79 71.23 0.70 -0.60 16 25 S 0.10 1.63 23.31 -56.49 -1.32 0.31 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.15 2.17 6.43 -2.91 -0.02 2.15 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.18 7.89 -2.39 -0.02 1.16 16 32 H 0.06 1.35 7.39 -2.38 -0.02 1.33 16 33 H 0.42 7.18 6.78 -96.74 -0.66 6.52 16 34 H 0.14 3.77 7.46 -2.39 -0.02 3.76 16 35 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.13 6.85 -2.38 -0.02 1.11 16 Total: -1.00 -73.89 377.79 -0.27 -74.16 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.35 Total: 15.75 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 4.08 Total: -60.45 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -0.62 Total: -79.14 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -4.49 Total: -70.81 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 75.89 SS G_CDS: -1.62 Total: 74.27 kcal Total: -73.89 -0.27 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.078 kcal (2) G-P(sol) polarization free energy of solvation -73.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds