Wall clock time and date at job start Tue Mar 31 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.38056 * 126.35108 * 59.69324 * 4 2 1 6 6 C 1.38831 * 134.13998 * 0.72801 * 5 4 2 7 7 C 1.37853 * 119.69109 * 179.59923 * 6 5 4 8 8 C 1.38776 * 120.44942 * 359.71742 * 7 6 5 9 9 C 1.36598 * 120.67191 * 359.97438 * 8 7 6 10 10 C 1.39748 * 119.88599 * 0.02562 * 9 8 7 11 11 N 1.35784 * 133.60054 * 179.97438 * 10 9 8 12 12 C 1.30110 * 109.64065 * 180.02562 * 11 10 9 13 13 C 1.50696 * 124.94615 * 180.02562 * 12 11 10 14 14 H 1.09009 * 109.47103 * 194.98134 * 13 12 11 15 15 C 1.52998 * 109.46998 * 74.98516 * 13 12 11 16 16 N 1.46900 * 109.47483 * 314.98205 * 13 12 11 17 17 C 1.46906 * 110.99849 * 205.00119 * 16 13 12 18 18 C 1.50703 * 109.46709 * 179.97438 * 17 16 13 19 19 O 1.21299 * 120.00073 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99974 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00188 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99550 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00343 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00571 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99669 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47149 * 90.00331 * 25 23 21 27 27 H 1.48497 * 109.47219 * 210.00291 * 25 23 21 28 28 H 1.48496 * 109.47526 * 330.00559 * 25 23 21 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.07999 * 120.15366 * 359.33438 * 6 5 4 37 37 H 1.07997 * 119.77571 * 179.73686 * 7 6 5 38 38 H 1.08002 * 119.66154 * 179.97438 * 8 7 6 39 39 H 1.08004 * 120.05905 * 179.97438 * 9 8 7 40 40 H 1.08998 * 109.47705 * 59.99858 * 15 13 12 41 41 H 1.09004 * 109.47099 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47134 * 299.99301 * 15 13 12 43 43 H 1.00900 * 110.99885 * 328.95019 * 16 13 12 44 44 H 1.08990 * 109.47069 * 299.99518 * 17 16 13 45 45 H 1.08997 * 109.46865 * 59.99959 * 17 16 13 46 46 H 0.96999 * 119.99778 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00360 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7620 -0.3383 -2.5063 6 6 1.0444 0.6857 -3.1095 7 6 0.9892 0.7627 -4.4848 8 6 1.6504 -0.1724 -5.2686 9 6 2.3664 -1.1831 -4.6926 10 6 2.4365 -1.2811 -3.3003 11 7 3.0492 -2.1466 -2.4522 12 6 2.8044 -1.8005 -1.2221 13 6 3.3172 -2.5238 -0.0035 14 1 2.7601 -2.1966 0.8745 15 6 4.8022 -2.2097 0.1886 16 7 3.1421 -3.9712 -0.1832 17 6 3.0545 -4.6559 1.1135 18 6 2.8750 -6.1353 0.8892 19 8 2.8245 -6.5758 -0.2398 20 7 2.7695 -6.9687 1.9431 21 6 2.6067 -8.3146 1.7391 22 1 2.5627 -8.7069 0.7338 23 6 2.4974 -9.1738 2.8256 24 7 2.3420 -10.4639 2.6301 25 14 2.5730 -8.4951 4.5643 26 1 1.2032 -8.1458 5.0193 27 1 3.1495 -9.5200 5.4712 28 1 3.4262 -7.2799 4.5848 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 0.5284 1.4162 -2.5041 37 1 0.4279 1.5562 -4.9554 38 1 1.5982 -0.1003 -6.3449 39 1 2.8768 -1.9058 -5.3121 40 1 4.9322 -1.1357 0.3220 41 1 5.1731 -2.7325 1.0703 42 1 5.3594 -2.5368 -0.6893 43 1 2.3328 -4.1696 -0.7523 44 1 3.9701 -4.4822 1.6787 45 1 2.2032 -4.2676 1.6726 46 1 2.8095 -6.6164 2.8460 47 1 2.2653 -11.0637 3.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162341539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:27 Heat of formation + Delta-G solvation = 44.996009 kcal Electronic energy + Delta-G solvation = -28042.404650 eV Core-core repulsion = 24226.076803 eV Total energy + Delta-G solvation = -3816.327847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44220 -38.59598 -37.81877 -36.52264 -35.83085 -33.92851 -31.75541 -31.68090 -31.04593 -29.96646 -28.82471 -27.81015 -26.77287 -24.53231 -23.51690 -23.11058 -22.01167 -21.02765 -19.78171 -19.38322 -18.42807 -17.52017 -17.10777 -16.44832 -15.84378 -15.52081 -15.35200 -14.98463 -14.88707 -14.58158 -14.40212 -13.99199 -13.83726 -13.77168 -13.49330 -13.24701 -12.91574 -12.79603 -12.73399 -12.28882 -12.22260 -12.21610 -12.04799 -12.02680 -11.81461 -11.70940 -11.48896 -11.37099 -11.22554 -11.05435 -10.59276 -10.47698 -9.96089 -9.87517 -9.55893 -8.58350 -8.43553 -8.24103 -8.18316 -8.14949 -6.29258 -3.80680 0.81162 1.39794 2.30040 2.65538 3.02618 3.06330 3.15114 3.74966 3.77808 3.91742 3.96264 4.06284 4.11095 4.29794 4.41632 4.49005 4.76647 4.77812 4.81546 4.90521 5.00536 5.03445 5.16087 5.18791 5.22246 5.23890 5.25965 5.33554 5.39510 5.51320 5.59228 5.61478 5.64788 5.68083 5.76656 5.79580 5.91200 5.98214 6.23266 6.32588 6.37604 6.43912 6.74509 6.91682 7.07267 7.50027 7.59731 7.89648 8.16409 8.61541 8.97054 9.43909 9.84515 10.83967 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002623 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.063866 B =10672.803112 C =11376.523006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 C -0.164 4.164 4 N -0.483 5.483 5 C 0.053 3.947 6 C -0.113 4.113 7 C -0.106 4.106 8 C -0.134 4.134 9 C -0.059 4.059 10 C 0.044 3.956 11 N -0.460 5.460 12 C 0.279 3.721 13 C 0.167 3.833 14 H 0.056 0.944 15 C -0.135 4.135 16 N -0.646 5.646 17 C 0.046 3.954 18 C 0.451 3.549 19 O -0.558 6.558 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.358 0.642 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 29.432 -3.895 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 C -0.222 4.222 4 N -0.174 5.174 5 C -0.056 4.056 6 C -0.134 4.134 7 C -0.126 4.126 8 C -0.154 4.154 9 C -0.078 4.078 10 C -0.075 4.075 11 N -0.178 5.178 12 C 0.013 3.987 13 C 0.055 3.945 14 H 0.074 0.926 15 C -0.194 4.194 16 N -0.280 5.280 17 C -0.087 4.087 18 C 0.236 3.764 19 O -0.439 6.439 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.180 0.820 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.605 28.146 -4.811 28.599 hybrid contribution -1.384 1.273 2.117 2.831 sum -2.989 29.418 -2.694 29.692 Atomic orbital electron populations 1.22220 0.93332 1.03523 1.03390 1.21450 0.95586 0.94060 0.86259 1.22199 1.02234 0.94415 1.03367 1.45528 1.42237 1.24647 1.05017 1.18805 1.02992 0.99749 0.84030 1.19963 1.01432 0.97359 0.94653 1.20856 0.99900 0.99348 0.92457 1.20609 0.99298 0.95587 0.99945 1.20078 0.98501 0.98235 0.91009 1.19188 0.99879 0.94166 0.94271 1.70534 1.23357 1.25667 0.98230 1.23586 0.92714 0.86904 0.95452 1.20008 0.97409 0.88093 0.88966 0.92613 1.21798 0.93550 1.00209 1.03836 1.60112 1.49189 1.03960 1.14771 1.21830 1.01289 0.94401 0.91150 1.19610 0.84104 0.86937 0.85722 1.90602 1.53551 1.77235 1.22535 1.42185 1.66444 1.08011 1.06462 1.19438 1.46871 0.79731 0.97206 0.86252 1.25034 0.97710 0.95203 0.98256 1.69619 1.48772 1.02143 1.31647 0.86671 0.78735 0.79111 0.84856 1.19737 1.20187 1.19462 0.91483 0.91590 0.90347 0.87904 0.90392 0.91660 0.91526 0.86356 0.85590 0.85535 0.85287 0.92875 0.91255 0.90436 0.82045 0.89091 0.93796 0.79750 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 9.25 37.16 0.34 -0.80 16 2 C 0.13 0.99 3.51 -67.93 -0.24 0.75 16 3 C -0.16 -0.98 9.26 37.16 0.34 -0.64 16 4 N -0.48 -5.45 2.65 -104.11 -0.28 -5.73 16 5 C 0.05 0.65 6.21 -83.99 -0.52 0.13 16 6 C -0.11 -1.09 8.77 -39.50 -0.35 -1.44 16 7 C -0.11 -0.93 10.03 -39.52 -0.40 -1.32 16 8 C -0.13 -1.28 9.96 -39.97 -0.40 -1.68 16 9 C -0.06 -0.72 10.05 -39.61 -0.40 -1.12 16 10 C 0.04 0.64 7.23 -84.70 -0.61 0.02 16 11 N -0.46 -7.51 11.24 -8.23 -0.09 -7.60 16 12 C 0.28 3.83 6.36 -154.82 -0.98 2.85 16 13 C 0.17 2.11 2.94 -68.87 -0.20 1.90 16 14 H 0.06 0.57 6.12 -51.92 -0.32 0.25 16 15 C -0.14 -1.55 9.40 37.16 0.35 -1.20 16 16 N -0.65 -10.64 5.90 -109.22 -0.64 -11.29 16 17 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 18 C 0.45 10.34 7.82 -10.98 -0.09 10.25 16 19 O -0.56 -15.42 15.78 5.54 0.09 -15.33 16 20 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 21 C -0.30 -8.66 10.16 -14.94 -0.15 -8.81 16 22 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.94 13.96 55.50 0.77 -25.16 16 25 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 H 0.07 0.47 6.33 -51.93 -0.33 0.14 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 6.33 -51.93 -0.33 0.09 16 36 H 0.12 0.88 6.04 -52.49 -0.32 0.56 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.36 6.59 8.05 -39.29 -0.32 6.27 16 44 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.19 16 46 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -35.43 382.13 -9.31 -44.75 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.73 Total: 13.53 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -3.43 Total: 0.65 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.29 Total: -63.94 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.43 -9.31 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162341539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.742 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds