Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.38056 * 126.35108 * 59.69324 * 4 2 1 6 6 C 1.38831 * 134.13998 * 0.72801 * 5 4 2 7 7 C 1.37853 * 119.69109 * 179.59923 * 6 5 4 8 8 C 1.38776 * 120.44942 * 359.71742 * 7 6 5 9 9 C 1.36598 * 120.67191 * 359.97438 * 8 7 6 10 10 C 1.39748 * 119.88599 * 0.02562 * 9 8 7 11 11 N 1.35784 * 133.60054 * 179.97438 * 10 9 8 12 12 C 1.30110 * 109.64065 * 180.02562 * 11 10 9 13 13 C 1.50696 * 124.94615 * 180.02562 * 12 11 10 14 14 H 1.09009 * 109.47103 * 194.98134 * 13 12 11 15 15 C 1.52998 * 109.46998 * 74.98516 * 13 12 11 16 16 N 1.46900 * 109.47483 * 314.98205 * 13 12 11 17 17 C 1.46906 * 110.99849 * 205.00119 * 16 13 12 18 18 C 1.50703 * 109.46709 * 179.97438 * 17 16 13 19 19 O 1.21299 * 120.00073 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99974 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00188 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99550 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00343 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00571 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99669 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47149 * 90.00331 * 25 23 21 27 27 H 1.48497 * 109.47219 * 210.00291 * 25 23 21 28 28 H 1.48496 * 109.47526 * 330.00559 * 25 23 21 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.07999 * 120.15366 * 359.33438 * 6 5 4 37 37 H 1.07997 * 119.77571 * 179.73686 * 7 6 5 38 38 H 1.08002 * 119.66154 * 179.97438 * 8 7 6 39 39 H 1.08004 * 120.05905 * 179.97438 * 9 8 7 40 40 H 1.08998 * 109.47705 * 59.99858 * 15 13 12 41 41 H 1.09004 * 109.47099 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47134 * 299.99301 * 15 13 12 43 43 H 1.00900 * 110.99885 * 328.95019 * 16 13 12 44 44 H 1.08990 * 109.47069 * 299.99518 * 17 16 13 45 45 H 1.08997 * 109.46865 * 59.99959 * 17 16 13 46 46 H 0.96999 * 119.99778 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00360 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7620 -0.3383 -2.5063 6 6 1.0444 0.6857 -3.1095 7 6 0.9892 0.7627 -4.4848 8 6 1.6504 -0.1724 -5.2686 9 6 2.3664 -1.1831 -4.6926 10 6 2.4365 -1.2811 -3.3003 11 7 3.0492 -2.1466 -2.4522 12 6 2.8044 -1.8005 -1.2221 13 6 3.3172 -2.5238 -0.0035 14 1 2.7601 -2.1966 0.8745 15 6 4.8022 -2.2097 0.1886 16 7 3.1421 -3.9712 -0.1832 17 6 3.0545 -4.6559 1.1135 18 6 2.8750 -6.1353 0.8892 19 8 2.8245 -6.5758 -0.2398 20 7 2.7695 -6.9687 1.9431 21 6 2.6067 -8.3146 1.7391 22 1 2.5627 -8.7069 0.7338 23 6 2.4974 -9.1738 2.8256 24 7 2.3420 -10.4639 2.6301 25 14 2.5730 -8.4951 4.5643 26 1 1.2032 -8.1458 5.0193 27 1 3.1495 -9.5200 5.4712 28 1 3.4262 -7.2799 4.5848 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 0.5284 1.4162 -2.5041 37 1 0.4279 1.5562 -4.9554 38 1 1.5982 -0.1003 -6.3449 39 1 2.8768 -1.9058 -5.3121 40 1 4.9322 -1.1357 0.3220 41 1 5.1731 -2.7325 1.0703 42 1 5.3594 -2.5368 -0.6893 43 1 2.3328 -4.1696 -0.7523 44 1 3.9701 -4.4822 1.6787 45 1 2.2032 -4.2676 1.6726 46 1 2.8095 -6.6164 2.8460 47 1 2.2653 -11.0637 3.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162341539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = 18.785880 kcal Electronic energy + Delta-G solvation = -28043.541207 eV Core-core repulsion = 24226.076803 eV Total energy + Delta-G solvation = -3817.464404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -43.29670 -40.35220 -38.72478 -37.43638 -36.77778 -35.94952 -33.76623 -32.50587 -32.20867 -30.76201 -29.69174 -28.33979 -28.23999 -26.05206 -24.56104 -24.02197 -22.85754 -21.81995 -21.32093 -20.64633 -20.28311 -18.41841 -18.10578 -17.63974 -17.14825 -16.69043 -16.57744 -16.29502 -15.76906 -15.61846 -15.43708 -15.23342 -14.96726 -14.72529 -14.59343 -14.46198 -14.26002 -14.00835 -13.46170 -13.45327 -13.35738 -13.21487 -12.95963 -12.92881 -12.81324 -12.62458 -12.43171 -12.40930 -12.27415 -12.19372 -11.96718 -11.89062 -11.51159 -11.29315 -10.80156 -10.46385 -10.25342 -9.43492 -9.26474 -9.05279 -8.40774 -6.02428 -0.02505 0.58887 1.30859 1.36773 1.46172 1.52223 1.75842 1.95471 2.24307 2.68450 2.93414 3.01243 3.15390 3.27682 3.45972 3.53122 3.84349 3.89841 4.05334 4.09705 4.11495 4.17103 4.23362 4.37253 4.40025 4.47916 4.51610 4.53079 4.59931 4.68486 4.75106 4.77871 4.83788 4.90194 4.92606 5.13317 5.17871 5.23422 5.31926 5.48829 5.52860 5.59151 5.62897 5.83599 5.96507 6.01048 6.15911 6.21746 6.59831 6.88252 6.97743 7.39285 7.97218 8.77177 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002623 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.063866 B =10672.803112 C =11376.523006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 C -0.158 4.158 4 N -0.475 5.475 5 C 0.045 3.955 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.126 4.126 9 C -0.090 4.090 10 C 0.001 3.999 11 N -0.514 5.514 12 C 0.268 3.732 13 C 0.171 3.829 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.670 5.670 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.588 5.588 21 C -0.330 4.330 22 H 0.051 0.949 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.227 1.227 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.342 0.658 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.391 0.609 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 34.181 -0.602 34.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.216 4.216 4 N -0.166 5.166 5 C -0.065 4.065 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.146 4.146 9 C -0.110 4.110 10 C -0.118 4.118 11 N -0.233 5.233 12 C 0.002 3.998 13 C 0.060 3.940 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.304 5.304 17 C -0.070 4.070 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.230 5.230 21 C -0.459 4.459 22 H 0.069 0.931 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.150 1.150 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.103 0.897 46 H 0.227 0.773 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.453 32.950 -1.496 33.075 hybrid contribution -1.160 -0.200 0.883 1.472 sum -3.613 32.751 -0.613 32.955 Atomic orbital electron populations 1.22213 0.92601 1.02606 1.04639 1.21849 0.96187 0.94960 0.85182 1.22179 1.01667 0.93230 1.04531 1.45709 1.41230 1.23906 1.05739 1.19094 1.03142 0.99955 0.84271 1.20356 1.00671 0.96903 0.95412 1.21342 0.98961 0.99480 0.92204 1.20971 0.97729 0.94413 1.01491 1.20278 1.00335 0.99722 0.90648 1.19614 1.01462 0.95331 0.95349 1.70418 1.25372 1.27604 0.99947 1.23695 0.93261 0.87816 0.95057 1.20135 0.98504 0.85572 0.89792 0.89008 1.21775 0.92370 1.01821 1.02924 1.60070 1.48739 1.06785 1.14825 1.21773 1.04541 0.88828 0.91901 1.20952 0.81272 0.89753 0.84489 1.90581 1.55343 1.79056 1.25067 1.41969 1.66878 1.06235 1.07917 1.18991 1.49444 0.82538 0.94970 0.93104 1.26184 0.95939 0.95090 1.04355 1.69815 1.49567 1.04337 1.33964 0.85323 0.80226 0.79769 0.75913 1.17995 1.20122 1.14979 0.91672 0.93553 0.87637 0.86552 0.87737 0.92500 0.91796 0.83650 0.81869 0.82883 0.86234 0.90565 0.89804 0.93581 0.83916 0.85756 0.89669 0.77265 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.25 71.98 0.67 -1.07 16 2 C 0.12 1.47 3.51 44.99 0.16 1.63 16 3 C -0.16 -1.34 9.26 71.98 0.67 -0.67 16 4 N -0.48 -10.19 2.65 -483.29 -1.28 -11.47 16 5 C 0.04 1.08 6.21 38.86 0.24 1.32 16 6 C -0.11 -1.94 8.77 22.32 0.20 -1.74 16 7 C -0.10 -1.50 10.03 22.31 0.22 -1.27 16 8 C -0.13 -2.29 9.96 22.01 0.22 -2.07 16 9 C -0.09 -2.35 10.05 22.25 0.22 -2.13 16 10 C 0.00 0.02 7.23 39.45 0.29 0.31 16 11 N -0.51 -17.86 11.24 -179.96 -2.02 -19.88 16 12 C 0.27 7.37 6.36 137.92 0.88 8.25 16 13 C 0.17 4.03 2.94 44.17 0.13 4.16 16 14 H 0.09 1.49 6.12 -2.38 -0.01 1.48 16 15 C -0.13 -2.76 9.40 71.98 0.68 -2.08 16 16 N -0.67 -21.91 5.90 -499.46 -2.95 -24.86 16 17 C 0.06 1.86 5.97 85.56 0.51 2.37 16 18 C 0.45 20.71 7.82 87.66 0.69 21.40 16 19 O -0.62 -36.08 15.78 -3.09 -0.05 -36.13 16 20 N -0.59 -27.90 5.09 -306.98 -1.56 -29.46 16 21 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 22 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 23 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 24 N -0.94 -57.22 13.96 21.66 0.30 -56.91 16 25 Si 0.97 38.43 27.74 68.60 1.90 40.34 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.40 6.52 99.48 0.65 -6.76 16 29 H 0.06 0.72 6.33 -2.39 -0.02 0.70 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.12 1.09 6.34 -2.39 -0.02 1.08 16 33 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.58 6.33 -2.39 -0.02 0.57 16 36 H 0.15 1.64 6.04 -2.91 -0.02 1.62 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.50 7.45 -2.38 -0.02 1.49 16 42 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.34 13.06 8.05 -89.69 -0.72 12.34 16 44 H 0.12 3.00 7.44 -2.39 -0.02 2.98 16 45 H 0.09 1.94 8.05 -2.39 -0.02 1.93 16 46 H 0.39 14.96 5.76 -92.71 -0.53 14.43 16 47 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -88.58 382.13 1.12 -87.47 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.30 Total: 41.85 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 7.08 Total: 9.05 kcal Atomic # 7 Polarization: -135.07 SS G_CDS: -7.51 Total: -142.58 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.05 Total: -36.13 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.34 kcal Total: -88.58 1.12 -87.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162341539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.252 kcal (2) G-P(sol) polarization free energy of solvation -88.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds