Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99966 * 2 1 4 4 C 1.53001 * 109.47150 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46947 * 65.00305 * 4 3 2 6 6 C 1.42906 * 114.00168 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47045 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 0.02562 * 9 7 6 11 11 C 1.50697 * 109.47293 * 90.00297 * 10 9 7 12 12 H 1.07997 * 120.00010 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00091 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00247 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47226 * 89.99205 * 15 13 11 17 17 H 1.48494 * 109.47051 * 209.99874 * 15 13 11 18 18 H 1.48508 * 109.46947 * 329.99558 * 15 13 11 19 19 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 20 20 C 1.52999 * 109.47276 * 89.99654 * 19 9 7 21 21 N 1.46893 * 109.47361 * 180.02562 * 20 19 9 22 22 C 1.47013 * 110.99929 * 293.63619 * 21 20 19 23 23 C 1.53109 * 109.25866 * 177.60627 * 22 21 20 24 24 O 1.43011 * 109.25677 * 56.85034 * 23 22 21 25 25 C 1.43014 * 113.73945 * 301.32986 * 24 23 22 26 26 C 1.47012 * 111.00146 * 170.00252 * 21 20 19 27 27 H 1.09003 * 109.47028 * 59.99281 * 1 2 3 28 28 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47218 * 299.99828 * 1 2 3 30 30 H 1.09002 * 109.46783 * 60.00448 * 3 2 1 31 31 H 1.09000 * 109.47500 * 300.00262 * 3 2 1 32 32 H 1.08995 * 109.47267 * 305.00481 * 4 3 2 33 33 H 1.08995 * 109.47083 * 185.00146 * 4 3 2 34 34 H 1.09005 * 109.47002 * 59.99866 * 6 5 4 35 35 H 1.09002 * 109.46834 * 300.00233 * 6 5 4 36 36 H 1.08997 * 109.46865 * 210.00034 * 10 9 7 37 37 H 1.08998 * 109.47058 * 329.99547 * 10 9 7 38 38 H 0.96995 * 120.00744 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.47416 * 209.99869 * 19 9 7 40 40 H 1.09008 * 109.47058 * 330.00468 * 19 9 7 41 41 H 1.08998 * 109.47074 * 300.00425 * 20 19 9 42 42 H 1.09007 * 109.46853 * 59.99785 * 20 19 9 43 43 H 1.08992 * 109.51039 * 297.54327 * 22 21 20 44 44 H 1.09006 * 109.50759 * 57.67723 * 22 21 20 45 45 H 1.08999 * 109.50103 * 296.91687 * 23 22 21 46 46 H 1.08994 * 109.53824 * 176.80489 * 23 22 21 47 47 H 1.08999 * 109.51245 * 298.73756 * 25 24 23 48 48 H 1.09006 * 109.54530 * 178.62599 * 25 24 23 49 49 H 1.09004 * 109.50986 * 302.32707 * 26 21 20 50 50 H 1.09010 * 109.50745 * 62.41541 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4187 -1.3216 7 6 5.7215 -0.2249 -2.6413 8 8 4.8379 -0.5129 -3.4205 9 7 7.0073 -0.4761 -2.9577 10 6 8.0750 -0.1238 -2.0185 11 6 8.3378 -1.2872 -1.0973 12 1 7.7664 -2.1977 -1.2009 13 6 9.3070 -1.1888 -0.1217 14 7 10.0026 -0.0798 0.0048 15 14 9.6323 -2.6306 1.0206 16 1 10.6719 -3.5085 0.4259 17 1 10.1041 -2.1244 2.3345 18 1 8.3793 -3.4050 1.2094 19 6 7.3372 -1.1023 -4.2404 20 6 7.5565 -0.0171 -5.2963 21 7 7.8867 -0.6450 -6.5826 22 6 9.1869 -1.3279 -6.5171 23 6 9.4634 -2.0169 -7.8562 24 8 9.4139 -1.0462 -8.9052 25 6 8.1614 -0.3622 -8.9981 26 6 7.8717 0.3435 -7.6707 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0902 34 1 5.7355 -0.2136 -0.5070 35 1 5.8639 1.3946 -1.2592 36 1 8.9831 0.1129 -2.5729 37 1 7.7713 0.7430 -1.4316 38 1 10.6847 -0.0106 0.6909 39 1 8.2465 -1.6937 -4.1329 40 1 6.5169 -1.7500 -4.5501 41 1 6.6473 0.5743 -5.4039 42 1 8.3767 0.6307 -4.9866 43 1 9.9712 -0.5988 -6.3142 44 1 9.1671 -2.0730 -5.7217 45 1 8.7090 -2.7834 -8.0336 46 1 10.4512 -2.4770 -7.8323 47 1 7.3691 -1.0806 -9.2088 48 1 8.2070 0.3749 -9.7999 49 1 6.8918 0.8187 -7.7174 50 1 8.6346 1.0999 -7.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220907898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = -159.853158 kcal Electronic energy + Delta-G solvation = -29253.475721 eV Core-core repulsion = 25088.663276 eV Total energy + Delta-G solvation = -4164.812444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.65819 -39.10825 -38.09836 -36.79384 -35.96751 -34.77613 -32.66176 -31.24242 -30.68933 -29.86194 -27.38643 -27.28597 -26.22754 -25.23230 -24.01603 -23.01692 -22.43651 -21.86028 -20.30670 -18.50190 -16.97165 -16.80422 -16.68169 -16.52477 -16.19302 -16.10443 -15.59115 -15.29971 -15.18468 -15.05941 -14.94407 -14.83531 -14.45047 -14.38393 -13.91131 -13.48941 -13.25951 -12.76571 -12.56541 -12.42503 -12.27080 -12.08996 -11.97466 -11.73219 -11.54618 -11.41091 -11.32774 -11.27948 -10.98053 -10.94616 -10.80808 -10.67749 -10.39141 -10.15651 -9.84497 -9.68962 -9.67610 -9.32494 -8.98948 -8.61601 -8.33711 -7.77902 -6.25407 -4.33491 3.19125 3.26631 3.28594 3.34628 3.37861 3.77390 3.79368 3.93739 4.26299 4.47736 4.86311 5.00407 5.02357 5.03416 5.07780 5.13181 5.21269 5.26154 5.26970 5.32508 5.33293 5.46375 5.51805 5.53805 5.56496 5.59443 5.63815 5.64676 5.74120 5.77097 5.79613 5.83666 5.96016 5.96661 6.03129 6.27260 6.44780 6.64173 6.99726 7.03094 7.06495 7.11399 7.14588 7.35997 7.55547 7.69987 7.97234 8.25890 8.73281 8.99929 9.35568 10.81069 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.003590 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.863956 B = 7797.164109 C =10915.256142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.061 3.939 5 O -0.362 6.362 6 C 0.049 3.951 7 C 0.520 3.480 8 O -0.550 6.550 9 N -0.596 5.596 10 C 0.236 3.764 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.129 3.871 20 C 0.044 3.956 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 3.499 -6.798 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.011 4.011 4 C -0.016 4.016 5 O -0.280 6.280 6 C -0.030 4.030 7 C 0.308 3.692 8 O -0.429 6.429 9 N -0.329 5.329 10 C 0.117 3.883 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.005 3.995 20 C -0.084 4.084 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.139 2.903 -7.451 11.410 hybrid contribution 0.841 0.281 1.511 1.752 sum -7.298 3.185 -5.940 9.934 Atomic orbital electron populations 1.22720 0.81515 1.02700 0.99561 1.88020 1.19205 1.27338 1.95283 1.22549 0.92629 0.85413 1.00500 1.22517 0.93034 0.97676 0.88364 1.87996 1.20911 1.82013 1.37087 1.22267 0.82090 1.01050 0.97630 1.20040 0.82619 0.79047 0.87516 1.90631 1.47209 1.53429 1.51588 1.48092 1.06689 1.60013 1.18097 1.19460 0.85083 0.96383 0.87417 1.21518 1.20110 1.00554 1.15767 0.91875 1.24941 0.95410 0.96100 0.97244 1.69916 1.23076 1.25908 1.34043 0.86512 0.78813 0.82336 0.79986 1.20438 1.21034 1.19625 1.21150 1.01881 0.94332 0.82150 1.22512 1.00628 0.97061 0.88241 1.62134 1.29738 1.29406 1.04604 1.22884 0.90252 0.99421 0.99060 1.22683 1.02216 0.90634 0.85705 1.87952 1.34941 1.54604 1.53293 1.22643 0.86335 0.95979 0.96229 1.22765 1.01969 0.94125 0.92146 0.94141 0.89727 0.94453 0.92046 0.92462 0.92209 0.91807 0.88959 0.90813 0.94596 0.94550 0.92456 0.90411 0.90057 0.90551 0.94389 0.93762 0.88856 0.92240 0.88502 0.92276 0.88714 0.89690 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.71 10.67 -40.08 -0.43 -6.14 16 3 C 0.07 0.83 6.32 37.16 0.23 1.07 16 4 C 0.06 0.88 6.32 37.16 0.23 1.12 16 5 O -0.36 -6.93 9.84 -59.73 -0.59 -7.52 16 6 C 0.05 0.95 4.97 36.00 0.18 1.12 16 7 C 0.52 11.31 7.75 -10.98 -0.09 11.23 16 8 O -0.55 -13.31 16.08 -14.35 -0.23 -13.54 16 9 N -0.60 -12.47 2.46 -175.06 -0.43 -12.90 16 10 C 0.24 5.41 4.96 -5.20 -0.03 5.39 16 11 C -0.54 -13.66 9.28 -34.44 -0.32 -13.98 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 15 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.13 2.40 5.34 -4.04 -0.02 2.38 16 20 C 0.04 0.73 5.28 -3.83 -0.02 0.71 16 21 N -0.53 -7.74 4.73 -234.30 -1.11 -8.85 16 22 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 23 C 0.06 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.06 10.83 -35.23 -0.38 -5.44 16 25 C 0.07 0.73 7.01 37.21 0.26 0.99 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.84 8.00 -51.93 -0.42 1.43 16 35 H 0.07 1.29 7.40 -51.93 -0.38 0.91 16 36 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.04 0.85 6.44 -51.93 -0.33 0.51 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.08 1.43 6.45 -51.93 -0.33 1.09 16 40 H 0.08 1.60 7.43 -51.92 -0.39 1.22 16 41 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 42 H 0.04 0.64 8.12 -51.92 -0.42 0.22 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 50 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -31.63 406.92 -8.55 -40.18 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.91 Total: 1.57 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 1.67 Total: 14.43 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.80 Total: -44.80 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.63 Total: -32.64 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.63 -8.55 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220907898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.669 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds