Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99966 * 2 1 4 4 C 1.53001 * 109.47150 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46947 * 65.00305 * 4 3 2 6 6 C 1.42906 * 114.00168 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47045 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 0.02562 * 9 7 6 11 11 C 1.50697 * 109.47293 * 90.00297 * 10 9 7 12 12 H 1.07997 * 120.00010 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00091 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00247 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47226 * 89.99205 * 15 13 11 17 17 H 1.48494 * 109.47051 * 209.99874 * 15 13 11 18 18 H 1.48508 * 109.46947 * 329.99558 * 15 13 11 19 19 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 20 20 C 1.52999 * 109.47276 * 89.99654 * 19 9 7 21 21 N 1.46893 * 109.47361 * 180.02562 * 20 19 9 22 22 C 1.47013 * 110.99929 * 293.63619 * 21 20 19 23 23 C 1.53109 * 109.25866 * 177.60627 * 22 21 20 24 24 O 1.43011 * 109.25677 * 56.85034 * 23 22 21 25 25 C 1.43014 * 113.73945 * 301.32986 * 24 23 22 26 26 C 1.47012 * 111.00146 * 170.00252 * 21 20 19 27 27 H 1.09003 * 109.47028 * 59.99281 * 1 2 3 28 28 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47218 * 299.99828 * 1 2 3 30 30 H 1.09002 * 109.46783 * 60.00448 * 3 2 1 31 31 H 1.09000 * 109.47500 * 300.00262 * 3 2 1 32 32 H 1.08995 * 109.47267 * 305.00481 * 4 3 2 33 33 H 1.08995 * 109.47083 * 185.00146 * 4 3 2 34 34 H 1.09005 * 109.47002 * 59.99866 * 6 5 4 35 35 H 1.09002 * 109.46834 * 300.00233 * 6 5 4 36 36 H 1.08997 * 109.46865 * 210.00034 * 10 9 7 37 37 H 1.08998 * 109.47058 * 329.99547 * 10 9 7 38 38 H 0.96995 * 120.00744 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.47416 * 209.99869 * 19 9 7 40 40 H 1.09008 * 109.47058 * 330.00468 * 19 9 7 41 41 H 1.08998 * 109.47074 * 300.00425 * 20 19 9 42 42 H 1.09007 * 109.46853 * 59.99785 * 20 19 9 43 43 H 1.08992 * 109.51039 * 297.54327 * 22 21 20 44 44 H 1.09006 * 109.50759 * 57.67723 * 22 21 20 45 45 H 1.08999 * 109.50103 * 296.91687 * 23 22 21 46 46 H 1.08994 * 109.53824 * 176.80489 * 23 22 21 47 47 H 1.08999 * 109.51245 * 298.73756 * 25 24 23 48 48 H 1.09006 * 109.54530 * 178.62599 * 25 24 23 49 49 H 1.09004 * 109.50986 * 302.32707 * 26 21 20 50 50 H 1.09010 * 109.50745 * 62.41541 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4187 -1.3216 7 6 5.7215 -0.2249 -2.6413 8 8 4.8379 -0.5129 -3.4205 9 7 7.0073 -0.4761 -2.9577 10 6 8.0750 -0.1238 -2.0185 11 6 8.3378 -1.2872 -1.0973 12 1 7.7664 -2.1977 -1.2009 13 6 9.3070 -1.1888 -0.1217 14 7 10.0026 -0.0798 0.0048 15 14 9.6323 -2.6306 1.0206 16 1 10.6719 -3.5085 0.4259 17 1 10.1041 -2.1244 2.3345 18 1 8.3793 -3.4050 1.2094 19 6 7.3372 -1.1023 -4.2404 20 6 7.5565 -0.0171 -5.2963 21 7 7.8867 -0.6450 -6.5826 22 6 9.1869 -1.3279 -6.5171 23 6 9.4634 -2.0169 -7.8562 24 8 9.4139 -1.0462 -8.9052 25 6 8.1614 -0.3622 -8.9981 26 6 7.8717 0.3435 -7.6707 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0902 34 1 5.7355 -0.2136 -0.5070 35 1 5.8639 1.3946 -1.2592 36 1 8.9831 0.1129 -2.5729 37 1 7.7713 0.7430 -1.4316 38 1 10.6847 -0.0106 0.6909 39 1 8.2465 -1.6937 -4.1329 40 1 6.5169 -1.7500 -4.5501 41 1 6.6473 0.5743 -5.4039 42 1 8.3767 0.6307 -4.9866 43 1 9.9712 -0.5988 -6.3142 44 1 9.1671 -2.0730 -5.7217 45 1 8.7090 -2.7834 -8.0336 46 1 10.4512 -2.4770 -7.8323 47 1 7.3691 -1.0806 -9.2088 48 1 8.2070 0.3749 -9.7999 49 1 6.8918 0.8187 -7.7174 50 1 8.6346 1.0999 -7.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220907898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -181.780775 kcal Electronic energy + Delta-G solvation = -29254.426574 eV Core-core repulsion = 25088.663276 eV Total energy + Delta-G solvation = -4165.763297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.06805 -40.41362 -39.24612 -38.05323 -37.31192 -36.39906 -34.56291 -32.27632 -31.92474 -31.13372 -29.13873 -28.67796 -27.15183 -26.56422 -25.04632 -24.89745 -23.51246 -23.21090 -21.37686 -20.17702 -18.68244 -18.35809 -17.88852 -17.76497 -17.61103 -17.12351 -16.89486 -16.72590 -16.40975 -16.29079 -16.07683 -15.99149 -15.81964 -15.73723 -15.25136 -14.83652 -14.56933 -14.32975 -14.09874 -13.77269 -13.57303 -13.33654 -13.29058 -13.15858 -12.93286 -12.87029 -12.64499 -12.50071 -12.35176 -12.32603 -12.13089 -12.00490 -11.87831 -11.73284 -11.46268 -10.80467 -10.72576 -10.71533 -10.60379 -10.53857 -9.62864 -9.42991 -8.22982 -6.37434 1.40950 1.44053 1.52528 1.64322 1.85306 2.39681 2.67710 2.88653 2.93258 3.06862 3.07992 3.68182 3.83540 3.92531 3.97836 4.07290 4.10287 4.18536 4.19188 4.25537 4.31354 4.37023 4.41649 4.43506 4.45892 4.47951 4.57857 4.57946 4.58665 4.70744 4.76056 4.78549 4.79640 4.81327 4.85544 4.90402 4.95115 5.00509 5.15377 5.59293 5.72979 5.86096 5.91021 6.01621 6.08415 6.15834 6.29476 6.48038 6.76193 7.24068 7.36957 8.82567 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.003590 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.863956 B = 7797.164109 C =10915.256142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.065 3.935 4 C 0.050 3.950 5 O -0.388 6.388 6 C 0.058 3.942 7 C 0.514 3.486 8 O -0.578 6.578 9 N -0.595 5.595 10 C 0.252 3.748 11 C -0.550 4.550 12 H 0.051 0.949 13 C 0.028 3.972 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.130 3.870 20 C 0.061 3.939 21 N -0.540 5.540 22 C 0.011 3.989 23 C 0.068 3.932 24 O -0.402 6.402 25 C 0.066 3.934 26 C 0.017 3.983 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.269 0.731 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.035 0.965 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.092 0.908 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 3.728 -6.719 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.012 4.012 4 C -0.026 4.026 5 O -0.307 6.307 6 C -0.021 4.021 7 C 0.303 3.697 8 O -0.459 6.459 9 N -0.327 5.327 10 C 0.131 3.869 11 C -0.589 4.589 12 H 0.069 0.931 13 C -0.173 4.173 14 N -0.555 5.555 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.198 1.198 19 C 0.007 3.993 20 C -0.068 4.068 21 N -0.266 5.266 22 C -0.117 4.117 23 C -0.009 4.009 24 O -0.321 6.321 25 C -0.010 4.010 26 C -0.111 4.111 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.138 0.862 49 H 0.111 0.889 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.347 3.136 -7.381 11.575 hybrid contribution 0.856 0.222 1.479 1.723 sum -7.491 3.359 -5.902 10.111 Atomic orbital electron populations 1.22910 0.79526 1.03580 1.00979 1.87957 1.21589 1.28872 1.95611 1.22696 0.91207 0.84984 1.02266 1.22896 0.94627 0.98670 0.86437 1.87971 1.20295 1.82830 1.39574 1.22127 0.82961 1.01448 0.95611 1.20513 0.82336 0.78703 0.88187 1.90603 1.47836 1.54778 1.52720 1.48098 1.06273 1.59715 1.18572 1.19165 0.84951 0.95635 0.87119 1.21649 1.20104 1.00692 1.16411 0.93055 1.25561 0.95165 0.98155 0.98389 1.69987 1.23521 1.27280 1.34698 0.85631 0.78458 0.79646 0.78441 1.19997 1.20410 1.19838 1.21194 1.01275 0.94891 0.81924 1.22220 0.99915 0.95916 0.88796 1.62143 1.30492 1.29932 1.04004 1.22925 0.89390 0.99103 1.00254 1.22746 1.03517 0.90320 0.84319 1.87940 1.35878 1.54896 1.53415 1.22782 0.85855 0.96451 0.95948 1.22871 1.02360 0.93816 0.92092 0.93580 0.89270 0.92089 0.88397 0.92363 0.92440 0.89071 0.89909 0.88978 0.95738 0.94731 0.92189 0.90324 0.91239 0.91477 0.95025 0.94626 0.89309 0.91740 0.86611 0.91868 0.86182 0.88921 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.42 -12.32 10.67 -144.34 -1.54 -13.86 16 3 C 0.06 1.53 6.32 71.98 0.45 1.99 16 4 C 0.05 1.38 6.32 71.98 0.45 1.84 16 5 O -0.39 -14.85 9.84 -125.55 -1.24 -16.08 16 6 C 0.06 2.25 4.97 71.23 0.35 2.60 16 7 C 0.51 22.74 7.75 87.65 0.68 23.42 16 8 O -0.58 -28.58 16.08 16.02 0.26 -28.32 16 9 N -0.59 -25.34 2.46 -826.17 -2.03 -27.37 16 10 C 0.25 11.66 4.96 85.63 0.43 12.09 16 11 C -0.55 -27.92 9.28 25.60 0.24 -27.68 16 12 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 13 C 0.03 1.44 5.46 84.65 0.46 1.90 16 14 N -0.92 -48.57 13.29 21.45 0.28 -48.29 16 15 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.13 4.97 5.34 86.38 0.46 5.43 16 20 C 0.06 2.02 5.28 86.30 0.46 2.48 16 21 N -0.54 -15.54 4.73 -895.18 -4.23 -19.77 16 22 C 0.01 0.30 5.44 86.32 0.47 0.77 16 23 C 0.07 1.51 7.01 72.02 0.50 2.01 16 24 O -0.40 -9.78 10.83 -148.98 -1.61 -11.39 16 25 C 0.07 1.36 7.01 72.02 0.50 1.86 16 26 C 0.02 0.40 5.64 86.32 0.49 0.89 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 3.36 8.00 -2.38 -0.02 3.34 16 35 H 0.09 3.19 7.40 -2.39 -0.02 3.17 16 36 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 37 H 0.03 1.62 6.44 -2.39 -0.02 1.60 16 38 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.08 2.95 6.45 -2.39 -0.02 2.94 16 40 H 0.07 2.82 7.43 -2.38 -0.02 2.80 16 41 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 42 H 0.03 1.09 8.12 -2.38 -0.02 1.07 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 2.40 6.38 -2.38 -0.02 2.38 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 46 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 48 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.09 2.06 8.09 -2.38 -0.02 2.04 16 50 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -67.25 406.92 0.02 -67.24 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.90 Total: 23.56 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.20 Total: 31.35 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -5.98 Total: -95.42 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -4.13 Total: -69.66 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -67.25 0.02 -67.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220907898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.544 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds