Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34813 * 120.00039 * 2 1 4 4 C 1.46404 * 120.00071 * 352.93113 * 3 2 1 5 5 O 1.21730 * 120.00084 * 354.03605 * 4 3 2 6 6 N 1.34771 * 120.00275 * 174.03430 * 4 3 2 7 7 C 1.40498 * 120.00208 * 179.97438 * 6 4 3 8 8 C 1.40670 * 126.08960 * 0.02675 * 7 6 4 9 9 N 1.30902 * 108.39128 * 179.73227 * 8 7 6 10 10 N 1.40064 * 108.41365 * 0.02562 * 9 8 7 11 11 C 1.37316 * 126.06638 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00118 * 179.97438 * 11 10 9 13 13 C 1.38985 * 119.99905 * 359.96701 * 11 10 9 14 14 N 1.31299 * 120.00203 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46898 * 60.00050 * 15 13 11 17 17 H 1.48503 * 109.47486 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47064 * 300.00521 * 15 13 11 19 19 C 1.35711 * 126.08773 * 179.71126 * 7 6 4 20 20 C 1.47209 * 119.99667 * 179.97438 * 2 1 3 21 21 C 1.39856 * 120.15708 * 114.73022 * 20 2 1 22 22 C 1.37878 * 119.85111 * 179.67425 * 21 20 2 23 23 C 1.38403 * 120.18415 * 0.62317 * 22 21 20 24 24 C 1.38499 * 120.32836 * 359.66972 * 23 22 21 25 25 Cl 1.73608 * 119.92393 * 180.02562 * 24 23 22 26 26 C 1.38028 * 120.14718 * 0.02562 * 24 23 22 27 27 H 1.08994 * 109.46849 * 84.40891 * 1 2 3 28 28 H 1.09004 * 109.47111 * 204.41126 * 1 2 3 29 29 H 1.09001 * 109.46981 * 324.41106 * 1 2 3 30 30 H 1.08004 * 120.00364 * 172.92654 * 3 2 1 31 31 H 0.97006 * 119.99961 * 0.02562 * 6 4 3 32 32 H 1.08002 * 125.80230 * 359.69773 * 8 7 6 33 33 H 0.96996 * 120.00158 * 179.97438 * 14 13 11 34 34 H 1.08001 * 126.24736 * 0.22869 * 19 7 6 35 35 H 1.08008 * 120.07873 * 359.97438 * 21 20 2 36 36 H 1.07998 * 119.91162 * 180.31795 * 22 21 20 37 37 H 1.07996 * 119.83772 * 179.70155 * 23 22 21 38 38 H 1.07990 * 120.09373 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4575 2.4306 -0.1560 5 8 0.2637 2.4228 -0.3941 6 7 2.1129 3.6021 -0.0360 7 6 1.4185 4.8142 -0.1863 8 6 0.0462 4.9544 -0.4615 9 7 -0.2342 6.2315 -0.5239 10 7 0.9428 6.9546 -0.2926 11 6 1.0609 8.3226 -0.2755 12 1 2.0210 8.7794 -0.0858 13 6 -0.0550 9.1194 -0.5023 14 7 -1.2224 8.5641 -0.7325 15 14 0.1057 10.9803 -0.4796 16 1 1.0695 11.4066 -1.5258 17 1 -1.2195 11.5950 -0.7467 18 1 0.5949 11.4187 0.8522 19 6 1.9512 6.0583 -0.0859 20 6 2.2430 -1.2749 0.0006 21 6 3.0324 -1.6310 -1.0976 22 6 3.7244 -2.8235 -1.0876 23 6 3.6295 -3.6740 0.0002 24 6 2.8451 -3.3317 1.0892 25 17 2.7341 -4.4061 2.4483 26 6 2.1515 -2.1384 1.0962 27 1 -0.3633 0.1001 -1.0227 28 1 -0.3633 -0.9358 0.4247 29 1 -0.3633 0.8357 0.5981 30 1 3.2550 1.1711 0.1152 31 1 3.0643 3.6084 0.1533 32 1 -0.6565 4.1457 -0.5986 33 1 -2.0013 9.1202 -0.8904 34 1 2.9844 6.2959 0.1202 35 1 3.1037 -0.9711 -1.9497 36 1 4.3383 -3.0970 -1.9329 37 1 4.1701 -4.6089 0.0001 38 1 1.5405 -1.8722 1.9459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221833460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = 83.206986 kcal Electronic energy + Delta-G solvation = -23731.109205 eV Core-core repulsion = 19987.762623 eV Total energy + Delta-G solvation = -3743.346581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.083 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.07105 -39.63441 -38.62639 -36.86486 -35.04376 -34.03763 -33.13959 -31.19963 -30.41965 -30.11134 -28.44352 -27.04728 -24.92773 -23.83159 -22.89299 -21.44100 -20.76098 -19.42414 -18.98749 -17.55204 -17.13479 -16.25674 -15.91624 -15.73596 -15.43412 -15.13616 -14.68108 -14.21356 -14.16647 -14.07681 -13.82737 -13.29037 -13.23590 -12.90484 -12.74812 -12.61478 -11.93041 -11.88561 -11.72679 -11.66541 -11.59688 -11.36794 -11.23453 -11.19256 -10.91792 -10.55561 -10.10050 -9.58511 -9.19037 -9.12975 -8.99086 -8.83577 -8.78173 -8.04459 -6.65875 -6.54903 -4.21408 0.61090 0.83663 1.41072 1.78721 2.96199 3.05010 3.09073 3.20666 3.37190 3.65370 3.80962 3.89576 4.36236 4.45224 4.49054 4.68343 4.79223 4.83341 4.97872 4.99869 5.03018 5.24506 5.37681 5.46523 5.61858 5.76702 5.86526 5.91891 6.01187 6.11279 6.25665 6.35701 6.36512 6.48009 6.59755 6.93218 6.98770 7.16471 7.26708 7.86990 8.21655 8.31369 8.65310 8.89978 9.38965 9.68508 10.41047 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.037154 B = 0.001860 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.431822 B =15050.630536 C =15152.666589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 C -0.191 4.191 4 C 0.526 3.474 5 O -0.534 6.534 6 N -0.618 5.618 7 C -0.059 4.059 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.143 5.143 11 C -0.323 4.323 12 H 0.115 0.885 13 C 0.046 3.954 14 N -0.770 5.770 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.085 4.085 20 C -0.039 4.039 21 C -0.098 4.098 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.034 4.034 25 Cl -0.071 7.071 26 C -0.095 4.095 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.397 0.603 32 H 0.177 0.823 33 H 0.275 0.725 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 -21.153 1.767 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.015 4.015 3 C -0.212 4.212 4 C 0.316 3.684 5 O -0.414 6.414 6 N -0.259 5.259 7 C -0.165 4.165 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.090 4.910 11 C -0.455 4.455 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.397 5.397 15 Si 0.758 3.242 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.236 4.236 20 C -0.039 4.039 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.060 4.060 25 Cl -0.042 7.042 26 C -0.114 4.114 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.230 0.770 32 H 0.194 0.806 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.547 -20.297 1.488 22.074 hybrid contribution 1.515 0.085 0.411 1.571 sum 10.062 -20.212 1.898 22.658 Atomic orbital electron populations 1.21108 0.89472 1.02528 1.04075 1.20926 0.96427 0.90365 0.93820 1.22745 0.99957 0.91980 1.06558 1.18040 0.87205 0.83515 0.79665 1.90685 1.14789 1.86916 1.48974 1.42424 1.11204 1.03975 1.68331 1.17271 0.93137 0.83752 1.22297 1.24134 0.93878 0.95446 1.07313 1.78247 1.04540 1.01525 1.24925 1.44535 1.03923 1.04827 1.37741 1.19816 0.97600 0.76852 1.51274 0.86698 1.25640 0.94625 1.01379 0.95488 1.70207 0.99183 1.36439 1.33843 0.85900 0.78346 0.80507 0.79415 1.19172 1.20139 1.19172 1.21274 0.94827 0.88466 1.19047 1.18911 0.96984 0.93974 0.94034 1.21498 0.95345 0.96892 0.97863 1.21068 0.99358 0.93910 0.98047 1.21156 0.98722 1.00625 0.92511 1.20820 1.01522 0.93074 0.90615 1.98381 1.97377 1.64357 1.44122 1.21214 0.99229 0.92032 0.98929 0.89991 0.92963 0.88443 0.85734 0.77020 0.80631 0.91420 0.83755 0.84818 0.84734 0.84933 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.47 36.01 0.31 -1.16 16 2 C -0.01 -0.15 5.48 -102.19 -0.56 -0.71 16 3 C -0.19 -2.40 9.63 -37.51 -0.36 -2.76 16 4 C 0.53 8.99 7.57 -12.98 -0.10 8.90 16 5 O -0.53 -10.78 10.46 5.16 0.05 -10.73 16 6 N -0.62 -10.91 5.46 -11.26 -0.06 -10.97 16 7 C -0.06 -1.35 6.90 -83.87 -0.58 -1.93 16 8 C -0.03 -0.84 10.85 -17.03 -0.18 -1.03 16 9 N -0.26 -7.61 10.39 30.80 0.32 -7.29 16 10 N -0.14 -3.92 3.74 -11.40 -0.04 -3.97 16 11 C -0.32 -8.57 10.25 -14.82 -0.15 -8.72 16 12 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.57 11.81 55.49 0.66 -20.92 16 15 Si 0.93 18.93 29.55 -169.99 -5.02 13.91 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 C -0.09 -2.01 11.49 -16.38 -0.19 -2.19 16 20 C -0.04 -0.38 5.29 -105.07 -0.56 -0.94 16 21 C -0.10 -0.83 9.73 -39.11 -0.38 -1.21 16 22 C -0.11 -0.75 10.03 -39.65 -0.40 -1.14 16 23 C -0.11 -0.84 9.82 -39.42 -0.39 -1.22 16 24 C -0.03 -0.30 6.31 -39.56 -0.25 -0.55 16 25 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 26 C -0.10 -0.90 9.48 -39.08 -0.37 -1.27 16 27 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 29 H 0.10 1.46 6.16 -51.93 -0.32 1.14 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.40 5.41 8.80 -40.82 -0.36 5.05 16 32 H 0.18 4.53 5.91 -52.49 -0.31 4.22 16 33 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -32.63 349.91 -8.49 -41.12 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.91 Total: 10.53 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.26 Total: -14.84 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.87 Total: -43.14 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.05 Total: -10.73 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.63 -8.49 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221833460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.324 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds