Wall clock time and date at job start Tue Mar 31 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 S 1.81396 * 109.47320 * 179.97438 * 12 9 7 14 14 C 1.76199 * 103.00267 * 179.97438 * 13 12 9 15 15 N 1.33719 * 125.59475 * 179.71640 * 14 13 12 16 16 C 1.30872 * 109.78822 * 179.81794 * 15 14 13 17 17 C 1.50706 * 125.91191 * 180.17207 * 16 15 14 18 18 C 1.53001 * 117.49293 * 9.06219 * 17 16 15 19 19 C 1.52998 * 117.49543 * 300.40426 * 17 16 15 20 20 N 1.34661 * 108.18167 * 0.44191 * 16 15 14 21 21 C 1.40125 * 126.77886 * 179.76653 * 20 16 15 22 22 C 1.38859 * 120.06565 * 324.70982 * 21 20 16 23 23 C 1.38115 * 119.92613 * 179.69700 * 22 21 20 24 24 C 1.38280 * 120.07237 * 0.57492 * 23 22 21 25 25 C 1.38285 * 120.13434 * 359.72260 * 24 23 22 26 26 C 1.38114 * 120.06993 * 359.97438 * 25 24 23 27 27 N 1.31302 * 125.58800 * 0.02636 * 14 13 12 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 30 30 H 1.09004 * 109.47066 * 299.99797 * 12 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 12 9 7 32 32 H 1.08992 * 115.54783 * 154.72769 * 17 16 15 33 33 H 1.09000 * 117.50561 * 0.02562 * 18 17 16 34 34 H 1.09005 * 117.49265 * 145.01901 * 18 17 16 35 35 H 1.08994 * 117.49578 * 214.97255 * 19 17 16 36 36 H 1.08998 * 117.50233 * 359.97438 * 19 17 16 37 37 H 1.07997 * 120.03374 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.95932 * 180.29243 * 23 22 21 39 39 H 1.07997 * 119.93386 * 179.69694 * 24 23 22 40 40 H 1.07999 * 119.96315 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.03653 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 8 0.4294 -2.5696 -1.1725 12 6 2.2451 -3.6622 -0.0104 13 16 1.3381 -5.2331 -0.0168 14 6 2.6266 -6.4348 -0.0229 15 7 2.4542 -7.7608 -0.0232 16 6 3.6182 -8.3590 -0.0322 17 6 3.8465 -9.8486 -0.0393 18 6 2.6275 -10.7490 -0.2495 19 6 3.2813 -10.6554 1.1314 20 7 4.5767 -7.4131 -0.0281 21 6 5.9622 -7.6227 -0.0303 22 6 6.5038 -8.7002 0.6581 23 6 7.8693 -8.9076 0.6488 24 6 8.6978 -8.0370 -0.0350 25 6 8.1619 -6.9595 -0.7163 26 6 6.7967 -6.7502 -0.7161 27 7 3.9137 -6.1751 -0.0220 28 1 -0.4850 0.8401 -0.0004 29 1 0.9216 -2.5207 -2.0034 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 4.7942 -10.1769 -0.4659 33 1 1.6605 -10.2641 -0.3831 34 1 2.7735 -11.6700 -0.8140 35 1 3.8571 -11.5148 1.4748 36 1 2.7448 -10.1088 1.9069 37 1 5.8577 -9.3778 1.1963 38 1 8.2907 -9.7482 1.1801 39 1 9.7656 -8.1985 -0.0366 40 1 8.8116 -6.2810 -1.2491 41 1 6.3787 -5.9088 -1.2487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253426265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:03 Heat of formation + Delta-G solvation = 93.689587 kcal Electronic energy + Delta-G solvation = -24626.727286 eV Core-core repulsion = 21021.712065 eV Total energy + Delta-G solvation = -3605.015221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30490 -39.40487 -37.44183 -35.93064 -34.27926 -32.19701 -31.57066 -31.02082 -29.71188 -29.57185 -25.44580 -24.86393 -23.89466 -22.92628 -22.58193 -21.69587 -21.03271 -20.06792 -18.37629 -17.22890 -17.01915 -16.22480 -16.19039 -15.67253 -15.11381 -14.86502 -14.66914 -14.53794 -14.34011 -14.14072 -13.84562 -13.65508 -13.34041 -12.80410 -12.34294 -12.19946 -12.08639 -11.84058 -11.71405 -11.62950 -11.30152 -11.20119 -10.93833 -10.92569 -10.85368 -10.70397 -10.35423 -10.12046 -9.74355 -9.57776 -9.39412 -9.18826 -8.86270 -8.64221 -8.33738 -7.19751 -6.08136 -4.28124 0.53594 0.94223 1.53238 1.68723 2.17458 2.69652 2.98316 3.26549 3.31759 3.32189 3.34120 3.56414 3.87863 4.24851 4.34662 4.46012 4.51016 4.53459 4.62586 4.73204 4.93813 4.97470 5.16794 5.18921 5.28882 5.30808 5.42001 5.56732 5.67923 5.80642 5.82233 5.90976 5.94177 5.99815 6.04729 6.10875 6.20183 6.29047 6.38852 6.64804 6.90869 7.54011 7.74829 7.92891 8.01938 8.72760 9.27696 9.48120 10.95943 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.003004 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.618906 B = 9317.454178 C =11141.353463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.570 4.570 8 H 0.059 0.941 9 C 0.247 3.753 10 H 0.068 0.932 11 O -0.558 6.558 12 C -0.125 4.125 13 S 0.025 5.975 14 C 0.215 3.785 15 N -0.510 5.510 16 C 0.320 3.680 17 C -0.106 4.106 18 C -0.143 4.143 19 C -0.154 4.154 20 N -0.335 5.335 21 C 0.152 3.848 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.100 4.100 26 C -0.106 4.106 27 N -0.316 5.316 28 H 0.264 0.736 29 H 0.349 0.651 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -22.657 -0.009 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.610 4.610 8 H 0.077 0.923 9 C 0.187 3.813 10 H 0.086 0.914 11 O -0.360 6.360 12 C -0.274 4.274 13 S 0.255 5.745 14 C -0.173 4.173 15 N -0.238 5.238 16 C 0.044 3.956 17 C -0.126 4.126 18 C -0.181 4.181 19 C -0.192 4.192 20 N -0.119 5.119 21 C 0.060 3.940 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.119 4.119 26 C -0.126 4.126 27 N -0.147 5.147 28 H 0.073 0.927 29 H 0.193 0.807 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.233 -22.181 0.456 25.832 hybrid contribution 2.667 1.130 -0.364 2.920 sum 15.900 -21.050 0.092 26.381 Atomic orbital electron populations 1.70068 1.05938 1.26893 1.46124 1.25029 0.94775 0.99182 0.93594 0.86630 0.79642 0.82704 0.78793 1.20048 1.21053 1.20042 1.21447 0.93223 0.90445 1.55869 0.92291 1.19206 0.87451 0.87591 0.87040 0.91420 1.86599 1.38078 1.96035 1.15303 1.24990 1.03727 0.93327 1.05388 1.86111 1.02701 0.94891 1.90824 1.26753 0.95397 0.95616 0.99506 1.70548 1.23481 1.04177 1.25567 1.23436 0.83640 0.92867 0.95692 1.20429 1.01035 0.83325 1.07851 1.23082 0.96767 0.99709 0.98550 1.23119 1.03000 1.01004 0.92091 1.47400 1.04708 1.04673 1.55163 1.17542 0.79191 0.97738 0.99570 1.21127 0.96135 0.98063 0.99663 1.21003 0.92160 0.99667 0.99094 1.21283 1.00271 0.94892 0.97576 1.21120 0.94108 0.97746 0.98914 1.21120 0.93436 0.99432 0.98613 1.78688 1.05330 1.00307 1.30343 0.92655 0.80729 0.90154 0.89613 0.85220 0.86763 0.87661 0.87501 0.87853 0.84796 0.84901 0.85297 0.84917 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.99 12.83 55.43 0.71 -24.28 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.57 -15.49 8.76 -34.44 -0.30 -15.79 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.25 6.25 2.88 -27.88 -0.08 6.17 16 10 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 11 O -0.56 -14.25 12.32 -35.23 -0.43 -14.68 16 12 C -0.12 -2.69 5.19 37.16 0.19 -2.50 16 13 S 0.03 0.51 21.81 -107.50 -2.34 -1.83 16 14 C 0.22 4.20 8.28 -90.89 -0.75 3.45 16 15 N -0.51 -9.07 10.79 -10.87 -0.12 -9.19 16 16 C 0.32 4.75 7.35 -155.45 -1.14 3.61 16 17 C -0.11 -1.03 4.28 -91.77 -0.39 -1.43 16 18 C -0.14 -1.20 10.14 -26.69 -0.27 -1.47 16 19 C -0.15 -1.19 10.24 -26.69 -0.27 -1.46 16 20 N -0.33 -5.30 3.74 -8.04 -0.03 -5.33 16 21 C 0.15 1.96 6.36 -83.61 -0.53 1.43 16 22 C -0.13 -1.23 8.34 -39.40 -0.33 -1.56 16 23 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 24 C -0.12 -0.89 10.04 -39.55 -0.40 -1.28 16 25 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 26 C -0.11 -1.27 9.79 -39.40 -0.39 -1.66 16 27 N -0.32 -6.04 12.05 30.15 0.36 -5.68 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.35 7.93 9.04 45.56 0.41 8.34 16 30 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 32 H 0.13 1.02 7.00 -51.93 -0.36 0.65 16 33 H 0.11 1.19 7.90 -51.93 -0.41 0.78 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.13 1.11 6.37 -52.49 -0.33 0.77 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -33.22 368.96 -11.33 -44.55 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.46 Total: 7.68 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -5.56 Total: -12.76 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.93 Total: -44.48 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.43 Total: -14.68 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.34 Total: -1.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.22 -11.33 -44.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253426265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.239 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds