Wall clock time and date at job start Tue Mar 31 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99701 * 2 1 4 4 C 1.53005 * 109.47004 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47017 * 65.00042 * 4 3 2 6 6 C 1.49048 * 110.99931 * 304.79009 * 5 4 3 7 7 C 1.55856 * 103.05512 * 197.54651 * 6 5 4 8 8 H 1.09001 * 109.98162 * 149.41708 * 7 6 5 9 9 C 1.51534 * 107.17332 * 269.59998 * 7 6 5 10 10 N 1.44707 * 114.09579 * 141.99838 * 9 7 6 11 11 C 1.36938 * 118.90318 * 138.14175 * 10 9 7 12 12 H 1.08003 * 119.99615 * 207.52155 * 11 10 9 13 13 C 1.38810 * 120.00510 * 27.51935 * 11 10 9 14 14 N 1.31623 * 119.99803 * 16.28056 * 13 11 10 15 15 Si 1.86799 * 120.00250 * 196.28518 * 13 11 10 16 16 H 1.48504 * 109.47256 * 60.00021 * 15 13 11 17 17 H 1.48500 * 109.47087 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47036 * 299.99669 * 15 13 11 19 19 C 1.45493 * 122.19161 * 318.11513 * 10 9 7 20 20 C 1.50454 * 110.51648 * 47.93626 * 19 10 9 21 21 C 1.48561 * 116.06839 * 319.42513 * 20 19 10 22 22 C 1.50705 * 104.99855 * 149.60279 * 21 20 19 23 23 C 1.38236 * 119.99684 * 195.91428 * 22 21 20 24 24 C 1.38235 * 119.99691 * 179.97438 * 23 22 21 25 25 C 1.38228 * 120.00253 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99830 * 0.27432 * 25 24 23 27 27 C 1.38230 * 120.00163 * 15.94029 * 22 21 20 28 28 C 1.48938 * 110.99881 * 189.99949 * 5 4 3 29 29 H 1.08998 * 109.47059 * 299.99723 * 1 2 3 30 30 H 1.08992 * 109.47435 * 60.00196 * 1 2 3 31 31 H 1.09000 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47153 * 60.00058 * 3 2 1 33 33 H 1.08998 * 109.47309 * 299.99667 * 3 2 1 34 34 H 1.08998 * 109.46890 * 305.00073 * 4 3 2 35 35 H 1.09004 * 109.47019 * 184.99943 * 4 3 2 36 36 H 1.09000 * 110.70015 * 315.93998 * 6 5 4 37 37 H 1.08996 * 110.70048 * 78.98173 * 6 5 4 38 38 H 1.09005 * 108.55591 * 263.19179 * 9 7 6 39 39 H 1.08996 * 108.55404 * 20.79842 * 9 7 6 40 40 H 0.96996 * 120.00166 * 180.02562 * 14 13 11 41 41 H 1.08999 * 109.24393 * 168.41905 * 19 10 9 42 42 H 1.09003 * 109.24207 * 287.81544 * 19 10 9 43 43 H 1.09008 * 107.83574 * 197.79081 * 20 19 10 44 44 H 1.08997 * 108.05662 * 81.23577 * 20 19 10 45 45 H 1.08003 * 119.99984 * 0.02562 * 23 22 21 46 46 H 1.08001 * 119.99568 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.00328 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00174 * 179.72465 * 26 25 24 49 49 H 1.08003 * 120.00004 * 359.97438 * 27 22 21 50 50 H 1.09003 * 110.45257 * 37.82536 * 28 5 4 51 51 H 1.09000 * 110.45124 * 275.27167 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 3.3018 -0.7488 -1.4677 7 6 4.1999 -1.4377 -2.5391 8 1 4.1758 -2.5192 -2.4057 9 6 3.6470 -1.0576 -3.8978 10 7 4.6608 -0.8184 -4.9023 11 6 4.4651 -1.3021 -6.1684 12 1 5.3138 -1.5431 -6.7914 13 6 3.1762 -1.4826 -6.6510 14 7 2.1599 -0.9056 -6.0455 15 14 2.8840 -2.5445 -8.1598 16 1 3.3643 -3.9245 -7.8945 17 1 1.4318 -2.5771 -8.4684 18 1 3.6235 -1.9766 -9.3155 19 6 5.8807 -0.0806 -4.6120 20 6 6.5156 -0.5885 -3.3461 21 6 5.5858 -0.9100 -2.2329 22 6 6.2578 -2.0244 -1.4729 23 6 5.5312 -2.7861 -0.5769 24 6 6.1475 -3.8087 0.1198 25 6 7.4901 -4.0699 -0.0798 26 6 8.2178 -3.3049 -0.9720 27 6 7.6008 -2.2846 -1.6714 28 6 5.4234 0.2086 -1.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 3.2878 -1.3296 -0.5454 37 1 2.2897 -0.6035 -1.8452 38 1 2.9973 -1.8611 -4.2450 39 1 3.0474 -0.1541 -3.7878 40 1 1.2592 -1.0320 -6.3825 41 1 6.5783 -0.1995 -5.4410 42 1 5.6417 0.9763 -4.4934 43 1 7.2178 0.1689 -2.9975 44 1 7.0819 -1.4875 -3.5893 45 1 4.4819 -2.5827 -0.4218 46 1 5.5797 -4.4040 0.8195 47 1 7.9717 -4.8686 0.4648 48 1 9.2679 -3.5061 -1.1248 49 1 8.1684 -1.6895 -2.3715 50 1 5.6857 -0.1538 -0.2000 51 1 6.0374 1.0686 -1.4613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306139299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:24 Heat of formation + Delta-G solvation = 39.875300 kcal Electronic energy + Delta-G solvation = -30613.362310 eV Core-core repulsion = 26900.352756 eV Total energy + Delta-G solvation = -3713.009554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.91988 -38.36583 -37.50906 -35.74604 -33.85383 -32.05512 -31.23023 -30.38494 -29.58370 -28.41034 -26.79209 -26.23498 -24.77889 -23.73132 -22.67907 -22.25018 -20.94034 -20.53183 -20.38094 -17.93108 -16.98043 -16.54944 -16.42146 -16.18771 -15.14445 -15.02062 -14.72106 -14.56634 -14.32014 -14.24646 -13.85379 -13.72116 -13.53788 -13.03868 -12.97873 -12.78466 -12.58941 -12.40170 -12.03588 -11.73402 -11.67494 -11.60028 -11.28633 -11.07718 -11.05476 -10.89916 -10.79024 -10.67539 -10.47789 -10.31688 -10.08003 -9.94188 -9.62078 -9.52072 -9.42204 -9.22749 -8.65915 -8.42229 -8.25655 -7.99213 -6.47092 -5.63851 -3.07442 1.61629 1.62757 3.45177 3.50408 3.52263 3.86630 4.01042 4.29760 4.59797 4.88997 4.97374 5.05928 5.12539 5.16448 5.25435 5.30724 5.36022 5.40659 5.46919 5.49317 5.50417 5.58057 5.70858 5.72221 5.77992 5.79777 5.82574 5.85973 5.89607 5.92446 6.05515 6.16413 6.26691 6.28845 6.44604 6.49141 6.52651 6.62469 6.70151 6.72866 6.81668 6.86044 6.96887 7.05187 7.14208 7.20684 7.23424 7.30227 7.41922 7.64310 7.92221 8.01915 8.61951 9.41793 10.08670 10.53974 11.42093 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008155 B = 0.005730 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.768966 B = 4885.288907 C = 7014.176957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.045 3.955 5 N -0.497 5.497 6 C 0.052 3.948 7 C -0.100 4.100 8 H 0.068 0.932 9 C 0.197 3.803 10 N -0.585 5.585 11 C -0.257 4.257 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.283 1.283 19 C 0.158 3.842 20 C -0.119 4.119 21 C 0.007 3.993 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.126 4.126 28 C 0.049 3.951 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.252 0.748 41 H 0.050 0.950 42 H 0.011 0.989 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.130 0.870 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 0.785 16.011 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.084 4.084 5 N -0.221 5.221 6 C -0.075 4.075 7 C -0.121 4.121 8 H 0.086 0.914 9 C 0.071 3.929 10 N -0.307 5.307 11 C -0.387 4.387 12 H 0.080 0.920 13 C -0.194 4.194 14 N -0.544 5.544 15 Si 0.728 3.272 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.031 3.969 20 C -0.157 4.157 21 C 0.006 3.994 22 C -0.068 4.068 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.154 4.154 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.079 4.079 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.144 0.856 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.147 0.853 50 H 0.061 0.939 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.191 1.026 15.573 16.160 hybrid contribution -0.262 -0.983 0.056 1.019 sum 3.929 0.043 15.629 16.115 Atomic orbital electron populations 1.22698 0.81536 1.02627 0.99716 1.88033 1.19374 1.27672 1.95241 1.22541 0.93451 0.85152 1.00351 1.22319 0.93620 1.00392 0.92058 1.65923 1.03307 1.22632 1.30255 1.23806 0.98981 0.88120 0.96624 1.22173 0.91906 0.98478 0.99529 0.91393 1.19855 0.89607 1.00079 0.83379 1.43001 1.18639 1.61686 1.07386 1.19193 0.91622 1.36602 0.91306 0.92004 1.25011 0.96549 0.99936 0.97897 1.70090 0.98628 1.43818 1.41892 0.86448 0.76719 0.80916 0.83153 1.21190 1.21730 1.20984 1.19946 0.89427 0.94013 0.93490 1.20806 0.97431 1.01019 0.96492 1.18636 0.95591 0.91565 0.93559 1.20736 0.93835 0.96452 0.95728 1.21325 1.00332 0.95926 0.96670 1.21081 0.94947 0.98074 0.99890 1.21028 0.94607 1.00165 0.99644 1.21103 0.99491 0.96327 0.97055 1.21348 0.94861 0.98414 0.99768 1.23299 0.90576 0.97203 0.96838 0.94724 0.93741 0.89826 0.93425 0.92004 0.94455 0.89675 0.94292 0.88815 0.91675 0.95138 0.93839 0.93166 0.97153 0.92984 0.91658 0.85646 0.86701 0.86838 0.86638 0.85252 0.93926 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.36 7.11 -35.23 -0.25 -5.61 16 3 C 0.06 0.78 6.04 37.16 0.22 1.00 16 4 C 0.04 0.59 5.65 -3.82 -0.02 0.57 16 5 N -0.50 -8.15 5.51 -228.78 -1.26 -9.41 16 6 C 0.05 0.91 3.47 -1.11 0.00 0.91 16 7 C -0.10 -1.98 2.48 -90.63 -0.22 -2.20 16 8 H 0.07 1.37 6.27 -51.93 -0.33 1.05 16 9 C 0.20 4.84 4.36 -5.74 -0.03 4.81 16 10 N -0.59 -15.03 3.06 -177.86 -0.54 -15.58 16 11 C -0.26 -7.22 9.40 -15.06 -0.14 -7.36 16 12 H 0.06 1.71 7.79 -52.48 -0.41 1.30 16 13 C 0.00 0.13 4.83 -17.43 -0.08 0.05 16 14 N -0.90 -26.51 11.13 55.49 0.62 -25.89 16 15 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.16 3.43 6.51 -5.85 -0.04 3.39 16 20 C -0.12 -2.11 3.83 -30.17 -0.12 -2.23 16 21 C 0.01 0.13 0.90 -158.35 -0.14 -0.02 16 22 C -0.07 -1.07 3.93 -104.62 -0.41 -1.49 16 23 C -0.12 -1.90 7.87 -39.58 -0.31 -2.21 16 24 C -0.12 -1.65 10.05 -39.59 -0.40 -2.04 16 25 C -0.14 -1.73 10.05 -39.59 -0.40 -2.13 16 26 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 27 C -0.13 -1.85 8.50 -39.59 -0.34 -2.19 16 28 C 0.05 0.76 5.58 -2.42 -0.01 0.75 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.65 5.67 -51.93 -0.29 0.36 16 37 H 0.09 1.82 6.26 -51.93 -0.33 1.50 16 38 H 0.06 1.80 6.34 -51.93 -0.33 1.47 16 39 H 0.03 0.84 7.19 -51.93 -0.37 0.46 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.05 0.80 7.45 -51.92 -0.39 0.41 16 44 H 0.06 1.16 5.56 -51.93 -0.29 0.87 16 45 H 0.13 1.93 4.77 -52.48 -0.25 1.68 16 46 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.13 1.77 5.85 -52.48 -0.31 1.46 16 50 H 0.04 0.64 6.81 -51.93 -0.35 0.28 16 51 H 0.08 1.16 7.54 -51.93 -0.39 0.77 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -30.91 374.86 -10.75 -41.66 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.21 Total: 2.98 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.73 Total: -10.92 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -1.19 Total: -50.88 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.25 Total: -5.61 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.91 -10.75 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306139299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.538 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds