Wall clock time and date at job start Tue Mar 31 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99701 * 2 1 4 4 C 1.53005 * 109.47004 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47017 * 65.00042 * 4 3 2 6 6 C 1.49048 * 110.99931 * 304.79009 * 5 4 3 7 7 C 1.55856 * 103.05512 * 197.54651 * 6 5 4 8 8 H 1.09001 * 109.98162 * 149.41708 * 7 6 5 9 9 C 1.51534 * 107.17332 * 269.59998 * 7 6 5 10 10 N 1.44707 * 114.09579 * 141.99838 * 9 7 6 11 11 C 1.36938 * 118.90318 * 138.14175 * 10 9 7 12 12 H 1.08003 * 119.99615 * 207.52155 * 11 10 9 13 13 C 1.38810 * 120.00510 * 27.51935 * 11 10 9 14 14 N 1.31623 * 119.99803 * 16.28056 * 13 11 10 15 15 Si 1.86799 * 120.00250 * 196.28518 * 13 11 10 16 16 H 1.48504 * 109.47256 * 60.00021 * 15 13 11 17 17 H 1.48500 * 109.47087 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47036 * 299.99669 * 15 13 11 19 19 C 1.45493 * 122.19161 * 318.11513 * 10 9 7 20 20 C 1.50454 * 110.51648 * 47.93626 * 19 10 9 21 21 C 1.48561 * 116.06839 * 319.42513 * 20 19 10 22 22 C 1.50705 * 104.99855 * 149.60279 * 21 20 19 23 23 C 1.38236 * 119.99684 * 195.91428 * 22 21 20 24 24 C 1.38235 * 119.99691 * 179.97438 * 23 22 21 25 25 C 1.38228 * 120.00253 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99830 * 0.27432 * 25 24 23 27 27 C 1.38230 * 120.00163 * 15.94029 * 22 21 20 28 28 C 1.48938 * 110.99881 * 189.99949 * 5 4 3 29 29 H 1.08998 * 109.47059 * 299.99723 * 1 2 3 30 30 H 1.08992 * 109.47435 * 60.00196 * 1 2 3 31 31 H 1.09000 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47153 * 60.00058 * 3 2 1 33 33 H 1.08998 * 109.47309 * 299.99667 * 3 2 1 34 34 H 1.08998 * 109.46890 * 305.00073 * 4 3 2 35 35 H 1.09004 * 109.47019 * 184.99943 * 4 3 2 36 36 H 1.09000 * 110.70015 * 315.93998 * 6 5 4 37 37 H 1.08996 * 110.70048 * 78.98173 * 6 5 4 38 38 H 1.09005 * 108.55591 * 263.19179 * 9 7 6 39 39 H 1.08996 * 108.55404 * 20.79842 * 9 7 6 40 40 H 0.96996 * 120.00166 * 180.02562 * 14 13 11 41 41 H 1.08999 * 109.24393 * 168.41905 * 19 10 9 42 42 H 1.09003 * 109.24207 * 287.81544 * 19 10 9 43 43 H 1.09008 * 107.83574 * 197.79081 * 20 19 10 44 44 H 1.08997 * 108.05662 * 81.23577 * 20 19 10 45 45 H 1.08003 * 119.99984 * 0.02562 * 23 22 21 46 46 H 1.08001 * 119.99568 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.00328 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00174 * 179.72465 * 26 25 24 49 49 H 1.08003 * 120.00004 * 359.97438 * 27 22 21 50 50 H 1.09003 * 110.45257 * 37.82536 * 28 5 4 51 51 H 1.09000 * 110.45124 * 275.27167 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 3.3018 -0.7488 -1.4677 7 6 4.1999 -1.4377 -2.5391 8 1 4.1758 -2.5192 -2.4057 9 6 3.6470 -1.0576 -3.8978 10 7 4.6608 -0.8184 -4.9023 11 6 4.4651 -1.3021 -6.1684 12 1 5.3138 -1.5431 -6.7914 13 6 3.1762 -1.4826 -6.6510 14 7 2.1599 -0.9056 -6.0455 15 14 2.8840 -2.5445 -8.1598 16 1 3.3643 -3.9245 -7.8945 17 1 1.4318 -2.5771 -8.4684 18 1 3.6235 -1.9766 -9.3155 19 6 5.8807 -0.0806 -4.6120 20 6 6.5156 -0.5885 -3.3461 21 6 5.5858 -0.9100 -2.2329 22 6 6.2578 -2.0244 -1.4729 23 6 5.5312 -2.7861 -0.5769 24 6 6.1475 -3.8087 0.1198 25 6 7.4901 -4.0699 -0.0798 26 6 8.2178 -3.3049 -0.9720 27 6 7.6008 -2.2846 -1.6714 28 6 5.4234 0.2086 -1.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 3.2878 -1.3296 -0.5454 37 1 2.2897 -0.6035 -1.8452 38 1 2.9973 -1.8611 -4.2450 39 1 3.0474 -0.1541 -3.7878 40 1 1.2592 -1.0320 -6.3825 41 1 6.5783 -0.1995 -5.4410 42 1 5.6417 0.9763 -4.4934 43 1 7.2178 0.1689 -2.9975 44 1 7.0819 -1.4875 -3.5893 45 1 4.4819 -2.5827 -0.4218 46 1 5.5797 -4.4040 0.8195 47 1 7.9717 -4.8686 0.4648 48 1 9.2679 -3.5061 -1.1248 49 1 8.1684 -1.6895 -2.3715 50 1 5.6857 -0.1538 -0.2000 51 1 6.0374 1.0686 -1.4613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306139299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:23 Heat of formation + Delta-G solvation = 21.186703 kcal Electronic energy + Delta-G solvation = -30614.172708 eV Core-core repulsion = 26900.352756 eV Total energy + Delta-G solvation = -3713.819953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.24361 -39.44145 -38.72756 -37.35715 -35.35331 -33.49162 -33.10164 -31.52302 -30.78788 -29.91562 -28.18560 -27.33395 -26.54280 -25.23326 -23.83086 -23.67403 -22.19419 -21.97851 -21.72922 -19.61385 -18.33868 -18.11607 -17.50246 -17.41100 -16.81947 -16.19145 -16.06958 -15.82760 -15.64017 -15.55490 -15.36003 -15.18003 -14.83627 -14.56468 -14.27286 -14.12899 -13.97655 -13.78085 -13.32997 -13.10251 -13.01065 -12.80717 -12.72888 -12.63142 -12.55981 -12.40472 -12.27517 -12.11893 -11.96384 -11.90004 -11.84574 -11.41958 -11.17486 -11.10868 -10.96766 -10.50162 -10.38875 -9.71911 -9.55602 -9.21604 -8.58151 -7.79744 -5.27686 0.55005 0.57645 1.45388 1.48436 1.54848 2.53437 2.90010 2.95197 3.08805 3.30747 3.60629 3.74108 3.75783 3.89008 4.06435 4.19642 4.21332 4.28314 4.31550 4.34657 4.39156 4.41771 4.48645 4.55473 4.58440 4.61882 4.71352 4.73718 4.74726 4.81327 4.86069 4.87298 4.92792 4.93319 5.01778 5.12455 5.17699 5.20046 5.21711 5.34173 5.37058 5.47657 5.59251 5.68104 5.68870 5.71089 5.84712 5.96085 5.96977 6.18837 6.21860 6.26965 6.45069 7.25352 8.04948 8.41819 9.23450 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008155 B = 0.005730 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.768966 B = 4885.288907 C = 7014.176957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.061 3.939 4 C 0.045 3.955 5 N -0.518 5.518 6 C 0.073 3.927 7 C -0.095 4.095 8 H 0.058 0.942 9 C 0.220 3.780 10 N -0.602 5.602 11 C -0.272 4.272 12 H 0.065 0.935 13 C -0.048 4.048 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.273 1.273 19 C 0.154 3.846 20 C -0.111 4.111 21 C 0.003 3.997 22 C -0.083 4.083 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.137 4.137 28 C 0.057 3.943 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.022 0.978 39 H -0.008 1.008 40 H 0.247 0.753 41 H 0.053 0.947 42 H -0.001 1.001 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.135 0.865 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.137 0.863 50 H 0.055 0.945 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 0.107 17.882 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.015 4.015 4 C -0.083 4.083 5 N -0.243 5.243 6 C -0.055 4.055 7 C -0.115 4.115 8 H 0.077 0.923 9 C 0.094 3.906 10 N -0.325 5.325 11 C -0.402 4.402 12 H 0.082 0.918 13 C -0.244 4.244 14 N -0.577 5.577 15 Si 0.791 3.209 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.199 1.199 19 C 0.029 3.971 20 C -0.149 4.149 21 C 0.002 3.998 22 C -0.083 4.083 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.154 4.154 28 C -0.070 4.070 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.010 0.990 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.017 0.983 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.155 0.845 50 H 0.073 0.927 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.394 0.360 17.457 18.595 hybrid contribution -0.928 -0.761 -0.518 1.307 sum 5.467 -0.402 16.940 17.804 Atomic orbital electron populations 1.22807 0.80357 1.03272 1.00373 1.87982 1.20800 1.28583 1.95388 1.22602 0.93214 0.84812 1.00887 1.22438 0.94027 1.01178 0.90654 1.65878 1.03843 1.21825 1.32734 1.23452 0.97114 0.88917 0.95974 1.21956 0.94419 0.98194 0.96942 0.92328 1.19444 0.88954 0.96603 0.85620 1.43290 1.19834 1.62307 1.07038 1.19561 0.91882 1.36434 0.92358 0.91750 1.25793 0.96340 1.01253 1.00999 1.70271 0.98685 1.45215 1.43510 0.85412 0.76318 0.79197 0.79968 1.20692 1.21960 1.19901 1.20108 0.88112 0.93068 0.95858 1.20723 0.97651 1.01905 0.94634 1.18542 0.93864 0.93215 0.94136 1.20553 0.94636 0.96604 0.96540 1.21329 1.00020 0.96958 0.97487 1.21360 0.95716 0.97533 0.99790 1.21416 0.94229 1.00392 0.99165 1.21448 1.00865 0.95384 0.96274 1.21495 0.94358 0.99247 1.00336 1.23258 0.90080 0.96860 0.96821 0.92288 0.94760 0.89310 0.90380 0.93852 0.93666 0.87599 0.93218 0.91587 0.95916 0.98987 0.94383 0.92898 0.98330 0.89846 0.91341 0.86671 0.84734 0.83927 0.83960 0.84516 0.92693 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -11.45 7.11 -148.98 -1.06 -12.51 16 3 C 0.06 1.51 6.04 71.98 0.43 1.95 16 4 C 0.05 1.13 5.65 86.30 0.49 1.62 16 5 N -0.52 -16.96 5.51 -877.73 -4.83 -21.79 16 6 C 0.07 2.66 3.47 86.87 0.30 2.96 16 7 C -0.09 -3.87 2.48 -10.80 -0.03 -3.90 16 8 H 0.06 2.47 6.27 -2.39 -0.01 2.46 16 9 C 0.22 11.48 4.36 86.23 0.38 11.86 16 10 N -0.60 -32.12 3.06 -716.63 -2.19 -34.32 16 11 C -0.27 -15.72 9.40 84.03 0.79 -14.93 16 12 H 0.06 3.61 7.79 -2.91 -0.02 3.58 16 13 C -0.05 -2.82 4.83 84.86 0.41 -2.41 16 14 N -0.93 -57.60 11.13 21.65 0.24 -57.36 16 15 Si 0.96 46.68 29.58 68.60 2.03 48.71 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 C 0.15 6.78 6.51 85.75 0.56 7.34 16 20 C -0.11 -3.83 3.83 28.37 0.11 -3.73 16 21 C 0.00 0.11 0.90 -54.67 -0.05 0.06 16 22 C -0.08 -2.54 3.93 -19.87 -0.08 -2.61 16 23 C -0.14 -4.10 7.87 22.27 0.18 -3.92 16 24 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 26 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 27 C -0.14 -3.66 8.50 22.27 0.19 -3.47 16 28 C 0.06 1.71 5.58 86.08 0.48 2.19 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 35 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.05 1.69 5.67 -2.39 -0.01 1.67 16 37 H 0.07 2.76 6.26 -2.39 -0.01 2.74 16 38 H 0.02 1.34 6.34 -2.38 -0.02 1.32 16 39 H -0.01 -0.46 7.19 -2.39 -0.02 -0.48 16 40 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 41 H 0.05 2.25 7.79 -2.39 -0.02 2.23 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.08 2.36 7.45 -2.38 -0.02 2.34 16 44 H 0.07 2.34 5.56 -2.39 -0.01 2.32 16 45 H 0.12 3.52 4.77 -2.91 -0.01 3.51 16 46 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 48 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 49 H 0.14 3.36 5.85 -2.91 -0.02 3.35 16 50 H 0.05 1.52 6.81 -2.39 -0.02 1.50 16 51 H 0.09 2.40 7.54 -2.39 -0.02 2.38 16 Total: -1.00 -70.07 374.86 1.17 -68.90 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.91 Total: 21.58 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.08 Total: -13.21 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -6.79 Total: -113.46 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.06 Total: -12.51 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -70.07 1.17 -68.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306139299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.083 kcal (2) G-P(sol) polarization free energy of solvation -70.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds