Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99806 * 2 1 4 4 O 1.20822 * 120.00236 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99597 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46800 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99777 * 89.99702 * 6 5 3 8 8 H 1.07999 * 120.00208 * 31.40791 * 7 6 5 9 9 C 1.38817 * 119.99776 * 211.40267 * 7 6 5 10 10 N 1.31618 * 119.99803 * 38.76765 * 9 7 6 11 11 Si 1.86798 * 120.00043 * 219.04062 * 9 7 6 12 12 H 1.48503 * 109.46837 * 264.73765 * 11 9 7 13 13 H 1.48503 * 109.47156 * 24.73418 * 11 9 7 14 14 H 1.48496 * 109.47002 * 144.73788 * 11 9 7 15 15 C 1.46500 * 119.99704 * 269.99439 * 6 5 3 16 16 C 1.53001 * 109.47110 * 269.18559 * 15 6 5 17 17 H 1.08998 * 109.47072 * 305.00235 * 16 15 6 18 18 O 1.42898 * 109.46970 * 65.00334 * 16 15 6 19 19 C 1.53002 * 109.46709 * 184.99997 * 16 15 6 20 20 N 1.46903 * 109.46873 * 180.90387 * 19 16 15 21 21 C 1.47006 * 111.00146 * 170.54009 * 20 19 16 22 22 C 1.53097 * 109.26122 * 182.39559 * 21 20 19 23 23 H 1.09008 * 109.50485 * 63.08215 * 22 21 20 24 24 C 1.53002 * 109.51023 * 183.21192 * 22 21 20 25 25 O 1.43011 * 109.25990 * 303.15220 * 22 21 20 26 26 C 1.43018 * 113.73947 * 58.66465 * 25 22 21 27 27 H 1.09005 * 109.54045 * 61.29052 * 26 25 22 28 28 C 1.52995 * 109.50908 * 181.39910 * 26 25 22 29 29 C 1.47021 * 111.00298 * 294.17889 * 20 19 16 30 30 H 1.09001 * 109.47430 * 60.00178 * 1 2 3 31 31 H 1.08998 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47107 * 300.00469 * 1 2 3 33 33 H 1.08994 * 109.47235 * 59.99201 * 5 3 2 34 34 H 1.09004 * 109.46739 * 299.99221 * 5 3 2 35 35 H 0.97000 * 120.00011 * 0.27285 * 10 9 7 36 36 H 1.08999 * 109.46878 * 29.18889 * 15 6 5 37 37 H 1.09001 * 109.46860 * 149.18804 * 15 6 5 38 38 H 0.96703 * 114.00139 * 59.99758 * 18 16 15 39 39 H 1.08989 * 109.47368 * 300.90938 * 19 16 15 40 40 H 1.08998 * 109.47129 * 60.91297 * 19 16 15 41 41 H 1.09012 * 109.50599 * 302.32884 * 21 20 19 42 42 H 1.09000 * 109.50775 * 62.45762 * 21 20 19 43 43 H 1.09002 * 109.47126 * 179.77869 * 24 22 21 44 44 H 1.08992 * 109.47149 * 299.78531 * 24 22 21 45 45 H 1.08997 * 109.46734 * 59.78421 * 24 22 21 46 46 H 1.08997 * 109.47287 * 179.78429 * 28 26 25 47 47 H 1.09008 * 109.47438 * 299.78649 * 28 26 25 48 48 H 1.08999 * 109.47248 * 59.78380 * 28 26 25 49 49 H 1.09004 * 109.50158 * 297.54108 * 29 20 19 50 50 H 1.08994 * 109.50668 * 57.66770 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1762 3.3366 1.1846 8 1 4.5244 2.7946 2.0514 9 6 3.9259 4.6992 1.2723 10 7 2.8934 5.2204 0.6440 11 14 5.0586 5.7942 2.2760 12 1 4.4976 5.9687 3.6399 13 1 6.4004 5.1649 2.3694 14 1 5.1780 7.1193 1.6165 15 6 4.1890 3.3818 -1.2701 16 6 5.6494 3.2343 -1.7019 17 1 6.3020 3.5821 -0.9011 18 8 5.9274 1.8605 -1.9801 19 6 5.8960 4.0695 -2.9599 20 7 7.2926 3.9108 -3.3870 21 6 7.5107 4.5135 -4.7099 22 6 8.9599 4.2737 -5.1415 23 1 9.1362 3.2030 -5.2457 24 6 9.2156 4.9672 -6.4811 25 8 9.8418 4.8085 -4.1508 26 6 9.6572 4.2433 -2.8501 27 1 9.8540 3.1718 -2.8870 28 6 10.6207 4.9060 -1.8636 29 6 8.2151 4.4828 -2.3954 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9557 0.7808 -0.8907 34 1 3.9564 0.7806 0.8893 35 1 2.3052 4.6518 0.1229 36 1 3.5394 2.9528 -2.0330 37 1 3.9525 4.4383 -1.1437 38 1 5.3821 1.4836 -2.6843 39 1 5.2321 3.7323 -3.7558 40 1 5.6995 5.1195 -2.7433 41 1 6.8352 4.0573 -5.4337 42 1 7.3192 5.5853 -4.6577 43 1 10.2486 4.7993 -6.7858 44 1 8.5432 4.5591 -7.2356 45 1 9.0372 6.0373 -6.3761 46 1 10.4768 4.4775 -0.8717 47 1 11.6473 4.7351 -2.1878 48 1 10.4244 5.9776 -1.8283 49 1 8.0348 5.5541 -2.3061 50 1 8.0537 4.0042 -1.4295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362349333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -153.316489 kcal Electronic energy + Delta-G solvation = -30461.625210 eV Core-core repulsion = 26297.096217 eV Total energy + Delta-G solvation = -4164.528993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.85686 -39.49570 -37.67193 -35.94701 -35.18098 -34.50125 -33.75730 -31.44979 -30.67949 -29.65530 -27.97881 -26.74201 -26.38294 -25.60380 -23.52729 -22.05650 -21.74526 -20.73057 -20.30732 -19.88062 -17.52628 -16.78354 -16.62877 -16.28725 -15.81412 -15.78470 -15.69364 -15.38142 -15.13483 -14.66645 -14.25121 -13.99487 -13.75101 -13.64862 -13.40803 -13.29436 -12.87171 -12.77248 -12.66213 -12.57880 -12.22155 -12.10939 -11.85487 -11.73910 -11.54041 -11.38823 -11.22880 -11.08822 -10.99994 -10.83096 -10.55780 -10.46574 -10.28712 -10.14733 -10.11370 -9.75451 -9.71024 -9.57512 -9.31102 -8.28450 -8.21728 -6.98195 -6.28959 -3.34147 3.18166 3.40553 3.44373 3.51798 3.60581 3.63256 3.83266 4.49323 4.68438 4.86755 4.92593 4.97696 5.07061 5.09955 5.16766 5.29190 5.35963 5.37167 5.42847 5.45493 5.47260 5.53080 5.53316 5.58283 5.67130 5.70792 5.77405 5.82205 5.89922 5.93499 5.95853 5.97680 6.02965 6.04724 6.11920 6.15689 6.19165 6.38625 6.76970 6.89039 7.06418 7.08106 7.16984 7.24953 7.96698 8.26898 8.48270 8.73217 8.98075 9.71304 10.11201 11.02265 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003639 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.864108 B = 7692.436006 C = 9110.591337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.410 3.590 4 O -0.491 6.491 5 C 0.156 3.844 6 N -0.546 5.546 7 C -0.383 4.383 8 H 0.059 0.941 9 C -0.004 4.004 10 N -0.876 5.876 11 Si 1.052 2.948 12 H -0.292 1.292 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.117 3.883 16 C 0.098 3.902 17 H 0.101 0.899 18 O -0.545 6.545 19 C 0.023 3.977 20 N -0.524 5.524 21 C 0.022 3.978 22 C 0.092 3.908 23 H 0.065 0.935 24 C -0.143 4.143 25 O -0.384 6.384 26 C 0.093 3.907 27 H 0.067 0.933 28 C -0.144 4.144 29 C 0.021 3.979 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.285 0.715 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.357 0.643 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -4.573 -10.938 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.248 3.752 4 O -0.376 6.376 5 C 0.025 3.975 6 N -0.264 5.264 7 C -0.511 4.511 8 H 0.077 0.923 9 C -0.212 4.212 10 N -0.511 5.511 11 Si 0.881 3.119 12 H -0.219 1.219 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.010 4.010 16 C 0.036 3.964 17 H 0.119 0.881 18 O -0.348 6.348 19 C -0.105 4.105 20 N -0.248 5.248 21 C -0.106 4.106 22 C 0.034 3.966 23 H 0.083 0.917 24 C -0.201 4.201 25 O -0.304 6.304 26 C 0.035 3.965 27 H 0.085 0.915 28 C -0.202 4.202 29 C -0.107 4.107 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.202 0.798 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.464 -2.924 -10.025 14.093 hybrid contribution -1.773 -0.777 -0.697 2.058 sum 7.691 -3.701 -10.722 13.705 Atomic orbital electron populations 1.23009 0.79348 1.02034 1.01672 1.86666 1.21552 1.36526 1.85139 1.27417 0.94992 0.80735 0.72030 1.90614 1.66781 1.36355 1.43812 1.21174 0.83711 0.90073 1.02540 1.43839 1.72644 1.07335 1.02563 1.19745 1.46583 0.93808 0.91012 0.92287 1.25845 0.96981 0.96863 1.01516 1.70674 1.08555 1.41896 1.30005 0.83771 0.76214 0.75870 0.76047 1.21909 1.21310 1.21215 1.21522 0.92356 1.00110 0.87022 1.22631 0.99115 0.80840 0.93788 0.88124 1.86598 1.64476 1.25186 1.58573 1.22910 0.88429 0.99850 0.99343 1.62184 1.04480 1.56584 1.01593 1.22826 0.97578 0.97968 0.92271 1.22087 0.88225 0.97823 0.88499 0.91700 1.21740 1.02464 1.01269 0.94614 1.87943 1.58885 1.65460 1.18105 1.22123 0.93799 0.97638 0.82944 0.91544 1.21752 0.98890 1.01492 0.98068 1.22876 0.92508 0.98188 0.97114 0.92984 0.89476 0.92812 0.89894 0.89578 0.90308 0.94877 0.90176 0.79834 0.90932 0.93874 0.90049 0.94305 0.91718 0.91060 0.91980 0.90637 0.91806 0.91942 0.94182 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 101.05 1.07 1.58 16 2 O -0.38 -7.04 10.57 -39.26 -0.41 -7.45 16 3 C 0.41 8.84 8.03 36.01 0.29 9.13 16 4 O -0.49 -12.53 15.70 -18.75 -0.29 -12.83 16 5 C 0.16 3.19 6.08 -5.19 -0.03 3.16 16 6 N -0.55 -12.85 1.75 -174.60 -0.31 -13.15 16 7 C -0.38 -10.27 9.29 -15.06 -0.14 -10.41 16 8 H 0.06 1.62 8.05 -52.49 -0.42 1.20 16 9 C 0.00 -0.11 4.51 -17.43 -0.08 -0.19 16 10 N -0.88 -25.72 12.40 55.49 0.69 -25.03 16 11 Si 1.05 24.37 30.05 -169.99 -5.11 19.26 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.12 2.49 4.70 -4.04 -0.02 2.47 16 16 C 0.10 1.76 3.06 -26.73 -0.08 1.68 16 17 H 0.10 2.07 6.54 -51.93 -0.34 1.73 16 18 O -0.55 -9.21 12.09 -35.23 -0.43 -9.64 16 19 C 0.02 0.36 4.63 -3.82 -0.02 0.34 16 20 N -0.52 -7.54 4.58 -234.31 -1.07 -8.61 16 21 C 0.02 0.27 4.93 -3.72 -0.02 0.25 16 22 C 0.09 1.06 3.43 -26.68 -0.09 0.97 16 23 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 24 C -0.14 -1.29 9.57 37.16 0.36 -0.94 16 25 O -0.38 -5.18 10.11 -35.23 -0.36 -5.54 16 26 C 0.09 1.20 3.43 -26.69 -0.09 1.11 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 C -0.14 -1.59 9.57 37.15 0.36 -1.24 16 29 C 0.02 0.31 4.72 -3.71 -0.02 0.29 16 30 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.08 1.46 7.19 -51.93 -0.37 1.09 16 34 H 0.09 1.73 8.04 -51.93 -0.42 1.31 16 35 H 0.29 8.72 7.30 -40.82 -0.30 8.42 16 36 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.08 1.97 5.68 -51.93 -0.29 1.67 16 38 H 0.36 4.88 9.05 45.56 0.41 5.29 16 39 H 0.07 1.02 8.05 -51.94 -0.42 0.60 16 40 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 41 H 0.08 0.89 8.09 -51.92 -0.42 0.47 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.47 6.38 -51.93 -0.33 1.14 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -32.31 401.44 -7.80 -40.10 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.03 Total: 8.62 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 1.48 Total: 8.22 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.69 Total: -46.80 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.49 Total: -35.46 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.11 Total: 19.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.31 -7.80 -40.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362349333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.212 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds