Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99806 * 2 1 4 4 O 1.20822 * 120.00236 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99597 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46800 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99777 * 89.99702 * 6 5 3 8 8 H 1.07999 * 120.00208 * 31.40791 * 7 6 5 9 9 C 1.38817 * 119.99776 * 211.40267 * 7 6 5 10 10 N 1.31618 * 119.99803 * 38.76765 * 9 7 6 11 11 Si 1.86798 * 120.00043 * 219.04062 * 9 7 6 12 12 H 1.48503 * 109.46837 * 264.73765 * 11 9 7 13 13 H 1.48503 * 109.47156 * 24.73418 * 11 9 7 14 14 H 1.48496 * 109.47002 * 144.73788 * 11 9 7 15 15 C 1.46500 * 119.99704 * 269.99439 * 6 5 3 16 16 C 1.53001 * 109.47110 * 269.18559 * 15 6 5 17 17 H 1.08998 * 109.47072 * 305.00235 * 16 15 6 18 18 O 1.42898 * 109.46970 * 65.00334 * 16 15 6 19 19 C 1.53002 * 109.46709 * 184.99997 * 16 15 6 20 20 N 1.46903 * 109.46873 * 180.90387 * 19 16 15 21 21 C 1.47006 * 111.00146 * 170.54009 * 20 19 16 22 22 C 1.53097 * 109.26122 * 182.39559 * 21 20 19 23 23 H 1.09008 * 109.50485 * 63.08215 * 22 21 20 24 24 C 1.53002 * 109.51023 * 183.21192 * 22 21 20 25 25 O 1.43011 * 109.25990 * 303.15220 * 22 21 20 26 26 C 1.43018 * 113.73947 * 58.66465 * 25 22 21 27 27 H 1.09005 * 109.54045 * 61.29052 * 26 25 22 28 28 C 1.52995 * 109.50908 * 181.39910 * 26 25 22 29 29 C 1.47021 * 111.00298 * 294.17889 * 20 19 16 30 30 H 1.09001 * 109.47430 * 60.00178 * 1 2 3 31 31 H 1.08998 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47107 * 300.00469 * 1 2 3 33 33 H 1.08994 * 109.47235 * 59.99201 * 5 3 2 34 34 H 1.09004 * 109.46739 * 299.99221 * 5 3 2 35 35 H 0.97000 * 120.00011 * 0.27285 * 10 9 7 36 36 H 1.08999 * 109.46878 * 29.18889 * 15 6 5 37 37 H 1.09001 * 109.46860 * 149.18804 * 15 6 5 38 38 H 0.96703 * 114.00139 * 59.99758 * 18 16 15 39 39 H 1.08989 * 109.47368 * 300.90938 * 19 16 15 40 40 H 1.08998 * 109.47129 * 60.91297 * 19 16 15 41 41 H 1.09012 * 109.50599 * 302.32884 * 21 20 19 42 42 H 1.09000 * 109.50775 * 62.45762 * 21 20 19 43 43 H 1.09002 * 109.47126 * 179.77869 * 24 22 21 44 44 H 1.08992 * 109.47149 * 299.78531 * 24 22 21 45 45 H 1.08997 * 109.46734 * 59.78421 * 24 22 21 46 46 H 1.08997 * 109.47287 * 179.78429 * 28 26 25 47 47 H 1.09008 * 109.47438 * 299.78649 * 28 26 25 48 48 H 1.08999 * 109.47248 * 59.78380 * 28 26 25 49 49 H 1.09004 * 109.50158 * 297.54108 * 29 20 19 50 50 H 1.08994 * 109.50668 * 57.66770 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1762 3.3366 1.1846 8 1 4.5244 2.7946 2.0514 9 6 3.9259 4.6992 1.2723 10 7 2.8934 5.2204 0.6440 11 14 5.0586 5.7942 2.2760 12 1 4.4976 5.9687 3.6399 13 1 6.4004 5.1649 2.3694 14 1 5.1780 7.1193 1.6165 15 6 4.1890 3.3818 -1.2701 16 6 5.6494 3.2343 -1.7019 17 1 6.3020 3.5821 -0.9011 18 8 5.9274 1.8605 -1.9801 19 6 5.8960 4.0695 -2.9599 20 7 7.2926 3.9108 -3.3870 21 6 7.5107 4.5135 -4.7099 22 6 8.9599 4.2737 -5.1415 23 1 9.1362 3.2030 -5.2457 24 6 9.2156 4.9672 -6.4811 25 8 9.8418 4.8085 -4.1508 26 6 9.6572 4.2433 -2.8501 27 1 9.8540 3.1718 -2.8870 28 6 10.6207 4.9060 -1.8636 29 6 8.2151 4.4828 -2.3954 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9557 0.7808 -0.8907 34 1 3.9564 0.7806 0.8893 35 1 2.3052 4.6518 0.1229 36 1 3.5394 2.9528 -2.0330 37 1 3.9525 4.4383 -1.1437 38 1 5.3821 1.4836 -2.6843 39 1 5.2321 3.7323 -3.7558 40 1 5.6995 5.1195 -2.7433 41 1 6.8352 4.0573 -5.4337 42 1 7.3192 5.5853 -4.6577 43 1 10.2486 4.7993 -6.7858 44 1 8.5432 4.5591 -7.2356 45 1 9.0372 6.0373 -6.3761 46 1 10.4768 4.4775 -0.8717 47 1 11.6473 4.7351 -2.1878 48 1 10.4244 5.9776 -1.8283 49 1 8.0348 5.5541 -2.3061 50 1 8.0537 4.0042 -1.4295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362349333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -176.741548 kcal Electronic energy + Delta-G solvation = -30462.640997 eV Core-core repulsion = 26297.096217 eV Total energy + Delta-G solvation = -4165.544780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.20998 -40.89986 -39.12308 -37.51707 -36.72633 -35.96626 -34.67982 -33.41535 -31.87879 -30.87145 -29.45499 -27.75337 -27.70262 -27.34037 -24.96539 -23.32883 -23.02532 -22.08488 -21.58860 -21.37463 -19.43367 -18.45898 -17.74836 -17.64253 -17.32081 -17.11679 -17.03514 -16.72473 -16.35165 -15.97463 -15.69062 -15.59879 -15.36483 -15.03310 -14.81536 -14.64798 -14.27778 -14.09105 -13.80951 -13.55885 -13.26508 -13.10618 -13.01639 -12.90553 -12.85615 -12.77453 -12.75796 -12.65289 -12.40175 -12.28098 -11.95027 -11.93213 -11.78128 -11.68386 -11.60276 -11.44714 -11.39225 -11.00277 -10.50782 -10.29190 -9.40838 -8.92889 -8.37379 -5.42402 1.46084 1.54844 1.59113 1.79865 1.97151 2.56609 2.63831 2.74457 3.10529 3.43527 3.66995 3.76059 3.88057 3.91073 4.09734 4.11229 4.15767 4.19718 4.27996 4.30515 4.34047 4.34666 4.42788 4.46356 4.50796 4.52775 4.61814 4.64380 4.66308 4.68832 4.71389 4.76804 4.80094 4.97382 5.00616 5.12763 5.14506 5.20443 5.26816 5.30021 5.54547 5.85605 5.92700 5.95741 6.26831 6.35612 6.94891 7.03970 7.09411 7.72052 8.12484 8.87696 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003639 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.864108 B = 7692.436006 C = 9110.591337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.416 3.584 4 O -0.537 6.537 5 C 0.154 3.846 6 N -0.562 5.562 7 C -0.383 4.383 8 H 0.047 0.953 9 C -0.048 4.048 10 N -0.907 5.907 11 Si 1.095 2.905 12 H -0.287 1.287 13 H -0.269 1.269 14 H -0.289 1.289 15 C 0.124 3.876 16 C 0.120 3.880 17 H 0.073 0.927 18 O -0.548 6.548 19 C 0.033 3.967 20 N -0.525 5.525 21 C 0.022 3.978 22 C 0.088 3.912 23 H 0.068 0.932 24 C -0.138 4.138 25 O -0.396 6.396 26 C 0.096 3.904 27 H 0.066 0.934 28 C -0.142 4.142 29 C 0.022 3.978 30 H 0.052 0.948 31 H 0.134 0.866 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.266 0.734 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.375 0.625 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.101 0.899 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.057 0.943 49 H 0.027 0.973 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.857 -6.195 -12.277 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.257 3.743 4 O -0.425 6.425 5 C 0.024 3.976 6 N -0.281 5.281 7 C -0.512 4.512 8 H 0.065 0.935 9 C -0.251 4.251 10 N -0.544 5.544 11 Si 0.920 3.080 12 H -0.214 1.214 13 H -0.193 1.193 14 H -0.215 1.215 15 C -0.003 4.003 16 C 0.058 3.942 17 H 0.091 0.909 18 O -0.353 6.353 19 C -0.095 4.095 20 N -0.249 5.249 21 C -0.106 4.106 22 C 0.030 3.970 23 H 0.086 0.914 24 C -0.195 4.195 25 O -0.316 6.316 26 C 0.038 3.962 27 H 0.084 0.916 28 C -0.199 4.199 29 C -0.106 4.106 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.222 0.778 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.559 -4.605 -11.384 16.195 hybrid contribution -2.203 -0.484 -0.328 2.279 sum 8.357 -5.090 -11.712 15.261 Atomic orbital electron populations 1.23351 0.76926 1.04983 1.01237 1.86602 1.23704 1.34401 1.84345 1.27278 0.95386 0.80786 0.70877 1.90619 1.67795 1.37980 1.46062 1.21241 0.83281 0.88659 1.04372 1.43930 1.73660 1.08154 1.02328 1.19855 1.45326 0.94175 0.91827 0.93483 1.26971 0.97310 0.98457 1.02312 1.70804 1.09910 1.41384 1.32277 0.83196 0.75482 0.74453 0.74890 1.21410 1.19338 1.21473 1.21471 0.94553 0.97810 0.86484 1.22102 0.95938 0.81947 0.94166 0.90947 1.86561 1.64860 1.24356 1.59552 1.22726 0.89808 0.98297 0.98713 1.62194 1.03517 1.56786 1.02428 1.22937 0.98834 0.97473 0.91380 1.22280 0.87248 0.98319 0.89138 0.91440 1.21741 1.03441 1.00782 0.93546 1.87944 1.59399 1.65861 1.18409 1.22126 0.92929 0.97800 0.83347 0.91596 1.21756 0.99112 1.01067 0.97974 1.22857 0.93878 0.97142 0.96767 0.92957 0.84776 0.93853 0.86521 0.89064 0.92363 0.93910 0.93765 0.77797 0.88920 0.95590 0.88108 0.95190 0.91102 0.88944 0.92461 0.89990 0.90509 0.92353 0.95483 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.37 -13.10 10.57 -51.41 -0.54 -13.65 16 3 C 0.42 17.69 8.03 71.24 0.57 18.26 16 4 O -0.54 -27.78 15.70 21.97 0.35 -27.44 16 5 C 0.15 6.17 6.08 85.63 0.52 6.69 16 6 N -0.56 -26.68 1.75 -706.32 -1.23 -27.91 16 7 C -0.38 -20.90 9.29 84.04 0.78 -20.12 16 8 H 0.05 2.63 8.05 -2.91 -0.02 2.61 16 9 C -0.05 -2.71 4.51 84.86 0.38 -2.32 16 10 N -0.91 -55.20 12.40 21.65 0.27 -54.93 16 11 Si 1.10 50.25 30.05 68.60 2.06 52.31 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 15 C 0.12 5.32 4.70 86.38 0.41 5.73 16 16 C 0.12 4.31 3.06 30.60 0.09 4.40 16 17 H 0.07 3.04 6.54 -2.39 -0.02 3.03 16 18 O -0.55 -17.55 12.09 -148.98 -1.80 -19.35 16 19 C 0.03 1.02 4.63 86.30 0.40 1.42 16 20 N -0.53 -14.61 4.58 -895.22 -4.10 -18.71 16 21 C 0.02 0.50 4.93 86.32 0.43 0.93 16 22 C 0.09 1.87 3.43 30.63 0.10 1.98 16 23 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 24 C -0.14 -2.16 9.57 71.98 0.69 -1.47 16 25 O -0.40 -10.17 10.11 -148.98 -1.51 -11.67 16 26 C 0.10 2.40 3.43 30.62 0.10 2.51 16 27 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 28 C -0.14 -2.98 9.57 71.98 0.69 -2.29 16 29 C 0.02 0.64 4.72 86.31 0.41 1.05 16 30 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.12 3.84 7.19 -2.39 -0.02 3.82 16 34 H 0.09 3.57 8.04 -2.39 -0.02 3.55 16 35 H 0.27 17.00 7.30 -92.71 -0.68 16.33 16 36 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 37 H 0.04 2.26 5.68 -2.39 -0.01 2.25 16 38 H 0.37 9.17 9.05 -74.06 -0.67 8.50 16 39 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 40 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 41 H 0.10 1.94 8.09 -2.38 -0.02 1.92 16 42 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 50 H 0.08 2.52 6.38 -2.39 -0.02 2.50 16 Total: -1.00 -72.02 401.44 0.60 -71.42 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.34 Total: 31.16 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.77 Total: 18.77 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.07 Total: -101.56 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -3.51 Total: -72.10 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.06 Total: 52.31 kcal Total: -72.02 0.60 -71.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362349333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.322 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds