Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99929 * 2 1 4 4 C 1.53001 * 109.47357 * 89.99589 * 3 2 1 5 5 H 1.09003 * 109.46979 * 59.99631 * 4 3 2 6 6 O 1.42904 * 109.47239 * 300.00113 * 4 3 2 7 7 C 1.52997 * 109.47202 * 179.97438 * 4 3 2 8 8 N 1.46902 * 109.47200 * 184.99912 * 7 4 3 9 9 C 1.47957 * 110.99872 * 170.00161 * 8 7 4 10 10 C 1.53937 * 86.17920 * 222.41747 * 9 8 7 11 11 O 1.42903 * 113.73709 * 269.36255 * 10 9 8 12 12 C 1.50704 * 113.73281 * 138.07712 * 10 9 8 13 13 H 1.07996 * 120.00019 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99820 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00101 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99714 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47148 * 90.00283 * 16 14 12 18 18 H 1.48499 * 109.46942 * 210.00207 * 16 14 12 19 19 H 1.48503 * 109.46961 * 329.99989 * 16 14 12 20 20 C 1.47959 * 110.99905 * 70.64224 * 8 7 4 21 21 C 1.34774 * 120.00193 * 179.97438 * 2 1 3 22 22 O 1.21515 * 120.00118 * 179.97438 * 21 2 1 23 23 O 1.34633 * 120.00105 * 0.02562 * 21 2 1 24 24 C 1.45200 * 117.00283 * 179.97438 * 23 21 2 25 25 C 1.52998 * 109.47376 * 59.99998 * 24 23 21 26 26 C 1.52997 * 109.47124 * 180.02562 * 24 23 21 27 27 C 1.53007 * 109.46975 * 300.00170 * 24 23 21 28 28 H 1.09005 * 109.47083 * 90.00483 * 1 2 3 29 29 H 1.09006 * 109.46904 * 210.00057 * 1 2 3 30 30 H 1.08995 * 109.47561 * 330.00290 * 1 2 3 31 31 H 1.09005 * 109.47178 * 329.99967 * 3 2 1 32 32 H 1.08999 * 109.47159 * 209.99755 * 3 2 1 33 33 H 0.96701 * 113.99569 * 300.00351 * 6 4 3 34 34 H 1.09007 * 109.47158 * 65.00363 * 7 4 3 35 35 H 1.09001 * 109.47551 * 304.99969 * 7 4 3 36 36 H 1.09000 * 113.75975 * 108.10133 * 9 8 7 37 37 H 1.09001 * 113.86215 * 336.74742 * 9 8 7 38 38 H 0.96696 * 113.99962 * 179.97438 * 11 10 9 39 39 H 0.97008 * 120.00029 * 180.02562 * 15 14 12 40 40 H 1.09004 * 113.75954 * 23.26493 * 20 8 7 41 41 H 1.08999 * 113.75873 * 251.90469 * 20 8 7 42 42 H 1.09004 * 109.46649 * 59.99907 * 25 24 23 43 43 H 1.08999 * 109.47343 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.46800 * 300.00206 * 25 24 23 45 45 H 1.09000 * 109.47444 * 60.00048 * 26 24 23 46 46 H 1.09006 * 109.46902 * 180.02562 * 26 24 23 47 47 H 1.08998 * 109.46959 * 299.99450 * 26 24 23 48 48 H 1.08999 * 109.46866 * 59.99555 * 27 24 23 49 49 H 1.08999 * 109.47164 * 179.97438 * 27 24 23 50 50 H 1.09000 * 109.46708 * 299.99779 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9508 1.9564 6 8 1.2038 1.8814 2.1161 7 6 3.2180 3.0352 1.4424 8 7 3.5672 3.3990 2.8222 9 6 4.5077 4.5409 2.8475 10 6 5.2543 3.7686 3.9501 11 8 4.8071 4.0767 5.2719 12 6 6.7543 3.8109 3.8109 13 1 7.2056 4.3506 2.9915 14 6 7.5506 3.1615 4.7303 15 7 7.0012 2.5048 5.7284 16 14 9.4099 3.2146 4.5581 17 1 9.9422 4.3877 5.2969 18 1 9.9946 1.9699 5.1183 19 1 9.7710 3.3285 3.1221 20 6 4.6129 2.5003 3.3590 21 6 2.1389 -1.1672 0.0005 22 8 3.3541 -1.1671 0.0001 23 8 1.4658 -2.3331 0.0005 24 6 2.2566 -3.5509 0.0005 25 6 3.1393 -3.5859 1.2497 26 6 1.3246 -4.7642 -0.0001 27 6 3.1393 -3.5857 -1.2488 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.6084 2.0284 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 0.6266 2.5440 1.7125 34 1 2.5934 3.8158 1.0080 35 1 4.1287 2.9286 0.8532 36 1 4.0583 5.4725 3.1914 37 1 5.0820 4.6596 1.9287 38 1 5.2734 3.5933 5.9676 39 1 7.5614 2.0482 6.3755 40 1 5.2172 2.0205 2.5890 41 1 4.2474 1.8014 4.1113 42 1 2.5104 -3.5610 2.1397 43 1 3.7333 -4.4998 1.2495 44 1 3.8033 -2.7214 1.2497 45 1 0.6961 -4.7392 -0.8903 46 1 1.9184 -5.6784 0.0003 47 1 0.6956 -4.7396 0.8897 48 1 3.8032 -2.7213 -1.2487 49 1 3.7333 -4.4997 -1.2486 50 1 2.5105 -3.5609 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496955541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = -139.113338 kcal Electronic energy + Delta-G solvation = -30255.742376 eV Core-core repulsion = 26091.829277 eV Total energy + Delta-G solvation = -4163.913098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = -0.55 seconds Orbital eigenvalues (eV) -40.90389 -39.26242 -38.11149 -36.66324 -35.26264 -34.10683 -33.92944 -32.02529 -30.87164 -28.20392 -27.59015 -27.48756 -26.65554 -25.65083 -25.09474 -23.27395 -21.53975 -21.00454 -19.47894 -18.57293 -17.94873 -17.33228 -16.81615 -16.58742 -15.97427 -15.66547 -15.22107 -15.13347 -14.92878 -14.63250 -14.34283 -14.07527 -13.88144 -13.67836 -13.47602 -13.27629 -12.69885 -12.62807 -12.42215 -12.33898 -12.14082 -12.05665 -12.03562 -11.85934 -11.69293 -11.57688 -11.42160 -11.40927 -11.10546 -10.98489 -10.81300 -10.65119 -10.47945 -10.36725 -10.11372 -9.98471 -9.88607 -9.27802 -8.68673 -8.58583 -8.16082 -7.74746 -6.22445 -4.32764 2.03877 2.79991 3.22281 3.29416 3.32211 3.71335 4.27970 4.45273 4.55947 4.59844 4.68207 4.75002 4.86646 4.98449 5.06117 5.13232 5.26755 5.27903 5.34827 5.37373 5.40924 5.51132 5.54391 5.58883 5.60855 5.65668 5.72901 5.80917 5.89228 6.01754 6.10181 6.11840 6.15586 6.23575 6.35247 6.37301 6.38792 6.49623 6.72262 7.11196 7.21038 7.25056 7.40099 7.79933 7.84135 8.01574 8.05130 8.29082 8.68792 9.37296 9.70643 10.83084 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003144 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.365345 B = 8905.112833 C =10271.828856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.591 5.591 3 C 0.100 3.900 4 C 0.099 3.901 5 H 0.103 0.897 6 O -0.542 6.542 7 C -0.009 4.009 8 N -0.466 5.466 9 C 0.006 3.994 10 C 0.246 3.754 11 O -0.572 6.572 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.013 4.013 21 C 0.650 3.350 22 O -0.564 6.564 23 O -0.363 6.363 24 C 0.135 3.865 25 C -0.185 4.185 26 C -0.139 4.139 27 C -0.183 4.183 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.363 0.637 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.389 0.611 39 H 0.271 0.729 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 -10.282 -14.296 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.330 5.330 3 C -0.022 4.022 4 C 0.038 3.962 5 H 0.121 0.879 6 O -0.345 6.345 7 C -0.139 4.139 8 N -0.188 5.188 9 C -0.123 4.123 10 C 0.204 3.796 11 O -0.384 6.384 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.730 3.270 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.142 4.142 21 C 0.405 3.595 22 O -0.453 6.453 23 O -0.278 6.278 24 C 0.099 3.901 25 C -0.242 4.242 26 C -0.196 4.196 27 C -0.240 4.240 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.209 0.791 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.244 0.756 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.557 -10.517 -13.753 21.990 hybrid contribution 1.930 -0.166 -0.750 2.077 sum -11.627 -10.683 -14.503 21.440 Atomic orbital electron populations 1.21756 0.78436 1.04008 1.01256 1.46478 1.07281 1.03121 1.76162 1.22262 0.98367 0.83054 0.98560 1.22318 0.85620 0.97076 0.91168 0.87923 1.86690 1.28424 1.62485 1.56918 1.23235 0.99632 0.96587 0.94494 1.68603 1.30774 1.05385 1.14071 1.24173 0.93385 0.95797 0.98931 1.19715 0.90597 0.88032 0.81245 1.86034 1.65511 1.70231 1.16626 1.21655 0.91198 1.33108 1.11691 0.91717 1.25060 0.99587 0.93763 0.94701 1.69349 1.36071 1.33820 1.14489 0.86420 0.84400 0.77659 0.78518 1.20344 1.20953 1.19750 1.24692 0.91596 0.98962 0.98926 1.18019 0.84022 0.81227 0.76251 1.90928 1.12185 1.86730 1.55437 1.86280 1.40995 1.13779 1.86709 1.22063 0.90853 0.80619 0.96606 1.22525 1.00723 1.04642 0.96329 1.21848 0.99552 0.95020 1.03223 1.22513 1.00617 1.04594 0.96266 0.93043 0.90645 0.90393 0.89629 0.88612 0.79087 0.91297 0.93694 0.90744 0.91895 0.75614 0.91887 0.92388 0.91073 0.92060 0.91184 0.89171 0.91638 0.90197 0.91463 0.89313 0.91185 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.18 59.85 0.61 1.40 16 2 N -0.59 -7.24 2.80 -187.41 -0.52 -7.76 16 3 C 0.10 1.19 5.10 -4.04 -0.02 1.17 16 4 C 0.10 1.48 3.28 -26.73 -0.09 1.40 16 5 H 0.10 1.95 7.41 -51.93 -0.38 1.56 16 6 O -0.54 -7.95 12.01 -35.23 -0.42 -8.37 16 7 C -0.01 -0.15 4.46 -3.82 -0.02 -0.17 16 8 N -0.47 -9.81 6.21 -238.26 -1.48 -11.29 16 9 C 0.01 0.13 7.36 -2.77 -0.02 0.11 16 10 C 0.25 6.38 1.44 -90.84 -0.13 6.25 16 11 O -0.57 -15.95 13.49 -35.23 -0.48 -16.43 16 12 C -0.54 -14.65 8.62 -34.44 -0.30 -14.95 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 15 N -0.90 -24.66 11.08 55.43 0.61 -24.04 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.01 -0.30 6.42 -2.77 -0.02 -0.32 16 21 C 0.65 9.41 7.70 54.05 0.42 9.82 16 22 O -0.56 -9.55 11.46 -19.28 -0.22 -9.77 16 23 O -0.36 -4.66 8.71 -40.31 -0.35 -5.01 16 24 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 25 C -0.19 -2.22 8.37 37.16 0.31 -1.90 16 26 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 27 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.71 7.37 -51.93 -0.38 0.33 16 30 H 0.08 0.60 6.88 -51.93 -0.36 0.25 16 31 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.10 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.36 3.77 8.79 45.56 0.40 4.17 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.74 7.69 -51.93 -0.40 0.34 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.06 1.29 7.75 -51.93 -0.40 0.89 16 38 H 0.39 11.02 6.42 45.56 0.29 11.31 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 41 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -32.04 396.30 -7.97 -40.01 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -7.25 Total: 17.29 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 1.19 Total: 3.62 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -1.39 Total: -43.10 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.47 Total: -39.58 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.04 -7.97 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496955541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.105 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.54 seconds