Wall clock time and date at job start Tue Mar 31 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99929 * 2 1 4 4 C 1.53001 * 109.47357 * 89.99589 * 3 2 1 5 5 H 1.09003 * 109.46979 * 59.99631 * 4 3 2 6 6 O 1.42904 * 109.47239 * 300.00113 * 4 3 2 7 7 C 1.52997 * 109.47202 * 179.97438 * 4 3 2 8 8 N 1.46902 * 109.47200 * 184.99912 * 7 4 3 9 9 C 1.47957 * 110.99872 * 170.00161 * 8 7 4 10 10 C 1.53937 * 86.17920 * 222.41747 * 9 8 7 11 11 O 1.42903 * 113.73709 * 269.36255 * 10 9 8 12 12 C 1.50704 * 113.73281 * 138.07712 * 10 9 8 13 13 H 1.07996 * 120.00019 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99820 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00101 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99714 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47148 * 90.00283 * 16 14 12 18 18 H 1.48499 * 109.46942 * 210.00207 * 16 14 12 19 19 H 1.48503 * 109.46961 * 329.99989 * 16 14 12 20 20 C 1.47959 * 110.99905 * 70.64224 * 8 7 4 21 21 C 1.34774 * 120.00193 * 179.97438 * 2 1 3 22 22 O 1.21515 * 120.00118 * 179.97438 * 21 2 1 23 23 O 1.34633 * 120.00105 * 0.02562 * 21 2 1 24 24 C 1.45200 * 117.00283 * 179.97438 * 23 21 2 25 25 C 1.52998 * 109.47376 * 59.99998 * 24 23 21 26 26 C 1.52997 * 109.47124 * 180.02562 * 24 23 21 27 27 C 1.53007 * 109.46975 * 300.00170 * 24 23 21 28 28 H 1.09005 * 109.47083 * 90.00483 * 1 2 3 29 29 H 1.09006 * 109.46904 * 210.00057 * 1 2 3 30 30 H 1.08995 * 109.47561 * 330.00290 * 1 2 3 31 31 H 1.09005 * 109.47178 * 329.99967 * 3 2 1 32 32 H 1.08999 * 109.47159 * 209.99755 * 3 2 1 33 33 H 0.96701 * 113.99569 * 300.00351 * 6 4 3 34 34 H 1.09007 * 109.47158 * 65.00363 * 7 4 3 35 35 H 1.09001 * 109.47551 * 304.99969 * 7 4 3 36 36 H 1.09000 * 113.75975 * 108.10133 * 9 8 7 37 37 H 1.09001 * 113.86215 * 336.74742 * 9 8 7 38 38 H 0.96696 * 113.99962 * 179.97438 * 11 10 9 39 39 H 0.97008 * 120.00029 * 180.02562 * 15 14 12 40 40 H 1.09004 * 113.75954 * 23.26493 * 20 8 7 41 41 H 1.08999 * 113.75873 * 251.90469 * 20 8 7 42 42 H 1.09004 * 109.46649 * 59.99907 * 25 24 23 43 43 H 1.08999 * 109.47343 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.46800 * 300.00206 * 25 24 23 45 45 H 1.09000 * 109.47444 * 60.00048 * 26 24 23 46 46 H 1.09006 * 109.46902 * 180.02562 * 26 24 23 47 47 H 1.08998 * 109.46959 * 299.99450 * 26 24 23 48 48 H 1.08999 * 109.46866 * 59.99555 * 27 24 23 49 49 H 1.08999 * 109.47164 * 179.97438 * 27 24 23 50 50 H 1.09000 * 109.46708 * 299.99779 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9508 1.9564 6 8 1.2038 1.8814 2.1161 7 6 3.2180 3.0352 1.4424 8 7 3.5672 3.3990 2.8222 9 6 4.5077 4.5409 2.8475 10 6 5.2543 3.7686 3.9501 11 8 4.8071 4.0767 5.2719 12 6 6.7543 3.8109 3.8109 13 1 7.2056 4.3506 2.9915 14 6 7.5506 3.1615 4.7303 15 7 7.0012 2.5048 5.7284 16 14 9.4099 3.2146 4.5581 17 1 9.9422 4.3877 5.2969 18 1 9.9946 1.9699 5.1183 19 1 9.7710 3.3285 3.1221 20 6 4.6129 2.5003 3.3590 21 6 2.1389 -1.1672 0.0005 22 8 3.3541 -1.1671 0.0001 23 8 1.4658 -2.3331 0.0005 24 6 2.2566 -3.5509 0.0005 25 6 3.1393 -3.5859 1.2497 26 6 1.3246 -4.7642 -0.0001 27 6 3.1393 -3.5857 -1.2488 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.6084 2.0284 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 0.6266 2.5440 1.7125 34 1 2.5934 3.8158 1.0080 35 1 4.1287 2.9286 0.8532 36 1 4.0583 5.4725 3.1914 37 1 5.0820 4.6596 1.9287 38 1 5.2734 3.5933 5.9676 39 1 7.5614 2.0482 6.3755 40 1 5.2172 2.0205 2.5890 41 1 4.2474 1.8014 4.1113 42 1 2.5104 -3.5610 2.1397 43 1 3.7333 -4.4998 1.2495 44 1 3.8033 -2.7214 1.2497 45 1 0.6961 -4.7392 -0.8903 46 1 1.9184 -5.6784 0.0003 47 1 0.6956 -4.7396 0.8897 48 1 3.8032 -2.7213 -1.2487 49 1 3.7333 -4.4997 -1.2486 50 1 2.5105 -3.5609 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496955541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:50 Heat of formation + Delta-G solvation = -166.429388 kcal Electronic energy + Delta-G solvation = -30256.926889 eV Core-core repulsion = 26091.829277 eV Total energy + Delta-G solvation = -4165.097611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.92149 -40.92216 -39.26788 -37.83316 -36.40548 -35.95525 -34.83320 -34.12844 -32.18401 -29.66056 -28.40354 -28.31516 -27.83600 -27.12419 -26.94091 -24.73576 -22.70115 -22.28441 -20.54495 -20.40989 -19.31761 -18.92299 -17.91276 -17.60389 -17.24672 -17.11915 -16.81208 -16.70481 -16.15319 -15.81988 -15.66241 -15.49416 -15.18739 -15.15967 -14.41638 -14.32122 -14.07149 -13.93179 -13.55555 -13.40598 -13.40417 -13.28667 -13.13734 -12.99653 -12.88997 -12.86958 -12.67110 -12.58065 -12.54825 -12.46183 -12.32338 -12.28329 -12.13878 -11.90108 -11.41974 -11.25093 -11.19090 -11.04126 -10.65541 -10.14834 -9.67241 -9.54753 -8.26722 -6.45568 1.10568 1.39784 1.40517 1.51146 1.72342 2.34741 2.81635 2.93617 3.08780 3.51903 3.63380 3.73351 3.77554 3.91840 3.93360 4.05125 4.06834 4.26392 4.27419 4.38390 4.45472 4.48909 4.54276 4.57912 4.59175 4.67657 4.71675 4.72943 4.75768 4.81005 4.86188 4.89274 4.94517 5.01923 5.09413 5.11350 5.25066 5.29097 5.38077 5.41081 5.47277 5.48113 5.72690 5.94887 6.25655 6.31266 6.60255 6.95169 7.25097 7.27717 7.50890 8.77800 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003144 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.365345 B = 8905.112833 C =10271.828856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.590 5.590 3 C 0.109 3.891 4 C 0.112 3.888 5 H 0.052 0.948 6 O -0.557 6.557 7 C -0.009 4.009 8 N -0.468 5.468 9 C 0.018 3.982 10 C 0.217 3.783 11 O -0.584 6.584 12 C -0.561 4.561 13 H 0.067 0.933 14 C 0.024 3.976 15 N -0.921 5.921 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.000 4.000 21 C 0.639 3.361 22 O -0.598 6.598 23 O -0.363 6.363 24 C 0.125 3.875 25 C -0.183 4.183 26 C -0.132 4.132 27 C -0.177 4.177 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.386 0.614 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.382 0.618 39 H 0.273 0.727 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.373 -10.226 -16.385 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.330 5.330 3 C -0.014 4.014 4 C 0.051 3.949 5 H 0.070 0.930 6 O -0.364 6.364 7 C -0.139 4.139 8 N -0.191 5.191 9 C -0.110 4.110 10 C 0.176 3.824 11 O -0.396 6.396 12 C -0.599 4.599 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.562 5.562 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.129 4.129 21 C 0.394 3.606 22 O -0.489 6.489 23 O -0.277 6.277 24 C 0.088 3.912 25 C -0.240 4.240 26 C -0.189 4.189 27 C -0.234 4.234 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.100 0.900 33 H 0.235 0.765 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.800 -10.444 -15.863 24.078 hybrid contribution 2.227 -0.200 -0.077 2.237 sum -12.573 -10.644 -15.941 22.923 Atomic orbital electron populations 1.21971 0.76244 1.04527 1.02941 1.46669 1.08646 1.02469 1.75168 1.22201 0.98951 0.83994 0.96244 1.21986 0.85276 0.95058 0.92597 0.92953 1.86651 1.28398 1.63602 1.57702 1.23355 1.00471 0.98444 0.91623 1.68475 1.29149 1.03920 1.17514 1.24087 0.93094 0.95845 0.97995 1.20148 0.90928 0.90124 0.81226 1.86012 1.65682 1.70369 1.17503 1.21953 0.92264 1.33557 1.12134 0.91517 1.25870 1.04092 0.93275 0.94356 1.69441 1.37570 1.34158 1.15008 0.85397 0.78903 0.77715 0.78678 1.19703 1.20678 1.19121 1.24346 0.92432 0.97999 0.98159 1.18372 0.83887 0.82171 0.76180 1.90916 1.13788 1.87300 1.56918 1.86291 1.41117 1.13859 1.86457 1.22398 0.91642 0.81070 0.96065 1.22489 1.00518 1.03990 0.97005 1.21861 0.99302 0.93984 1.03780 1.22451 1.00376 1.04134 0.96486 0.90691 0.91346 0.88711 0.84983 0.89967 0.76524 0.87328 0.93724 0.90191 0.90198 0.76458 0.91692 0.93219 0.94175 0.92554 0.89036 0.92876 0.90531 0.88060 0.91439 0.92425 0.89219 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.18 127.77 1.30 2.62 16 2 N -0.59 -13.85 2.80 -977.25 -2.73 -16.58 16 3 C 0.11 2.40 5.10 86.38 0.44 2.84 16 4 C 0.11 3.30 3.28 30.59 0.10 3.40 16 5 H 0.05 2.10 7.41 -2.39 -0.02 2.08 16 6 O -0.56 -15.48 12.01 -148.98 -1.79 -17.27 16 7 C -0.01 -0.29 4.46 86.30 0.38 0.09 16 8 N -0.47 -19.58 6.21 -910.94 -5.66 -25.24 16 9 C 0.02 0.79 7.36 86.41 0.64 1.43 16 10 C 0.22 11.47 1.44 -10.89 -0.02 11.45 16 11 O -0.58 -33.51 13.49 -148.98 -2.01 -35.52 16 12 C -0.56 -30.94 8.62 25.60 0.22 -30.72 16 13 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 14 C 0.02 1.29 5.39 84.66 0.46 1.74 16 15 N -0.92 -51.95 11.08 21.45 0.24 -51.71 16 16 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 C 0.00 0.02 6.42 86.40 0.55 0.57 16 21 C 0.64 18.80 7.70 129.79 1.00 19.80 16 22 O -0.60 -21.40 11.46 19.80 0.23 -21.17 16 23 O -0.36 -9.26 8.71 -55.43 -0.48 -9.74 16 24 C 0.12 2.69 1.13 -10.79 -0.01 2.68 16 25 C -0.18 -4.52 8.37 71.98 0.60 -3.92 16 26 C -0.13 -1.82 8.85 71.98 0.64 -1.19 16 27 C -0.18 -3.65 8.37 71.98 0.60 -3.05 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 1.18 7.37 -2.38 -0.02 1.16 16 30 H 0.09 1.16 6.88 -2.39 -0.02 1.14 16 31 H 0.13 1.71 8.07 -2.38 -0.02 1.69 16 32 H 0.08 2.09 7.42 -2.39 -0.02 2.07 16 33 H 0.39 6.70 8.79 -74.06 -0.65 6.04 16 34 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.04 1.41 7.69 -2.39 -0.02 1.39 16 36 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.08 3.16 7.75 -2.39 -0.02 3.14 16 38 H 0.38 22.52 6.42 -74.06 -0.48 22.05 16 39 H 0.27 14.55 8.31 -92.70 -0.77 13.77 16 40 H 0.05 2.51 7.73 -2.38 -0.02 2.49 16 41 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.73 5.88 -2.39 -0.01 1.71 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 50 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.14 396.30 -3.46 -76.60 By element: Atomic # 1 Polarization: 48.07 SS G_CDS: -0.18 Total: 47.89 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.91 Total: 7.76 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -8.15 Total: -93.53 kcal Atomic # 8 Polarization: -79.65 SS G_CDS: -4.06 Total: -83.71 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.14 -3.46 -76.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496955541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.827 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds