Wall clock time and date at job start Tue Mar 31 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99982 * 2 1 4 4 C 1.52996 * 109.54111 * 294.72498 * 3 2 1 5 5 H 1.09001 * 109.46836 * 184.67741 * 4 3 2 6 6 C 1.52999 * 109.47187 * 304.67626 * 4 3 2 7 7 N 1.46902 * 109.47171 * 64.67486 * 4 3 2 8 8 C 1.46897 * 110.99686 * 129.70659 * 7 4 3 9 9 C 1.53009 * 109.46728 * 180.02562 * 8 7 4 10 10 H 1.08997 * 109.47153 * 304.99706 * 9 8 7 11 11 O 1.42901 * 109.46962 * 64.99933 * 9 8 7 12 12 C 1.53002 * 109.46873 * 184.99572 * 9 8 7 13 13 N 1.46902 * 109.47064 * 176.63543 * 12 9 8 14 14 C 1.46897 * 110.99944 * 163.84841 * 13 12 9 15 15 C 1.46892 * 111.00215 * 287.80601 * 13 12 9 16 16 C 1.50700 * 109.47152 * 170.00058 * 15 13 12 17 17 H 1.08000 * 120.00222 * 359.97438 * 16 15 13 18 18 C 1.37880 * 119.99754 * 179.97438 * 16 15 13 19 19 N 1.31505 * 120.00611 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99453 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47513 * 59.99893 * 20 18 16 22 22 H 1.48502 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47149 * 299.99476 * 20 18 16 24 24 C 1.53181 * 109.54107 * 174.54792 * 3 2 1 25 25 C 1.53277 * 109.06496 * 297.03032 * 24 3 2 26 26 O 1.42904 * 109.45994 * 302.44471 * 25 24 3 27 27 C 1.42902 * 114.10093 * 61.16017 * 26 25 24 28 28 C 1.53100 * 109.41211 * 298.84381 * 27 26 25 29 29 H 1.09003 * 109.47229 * 306.41372 * 1 2 3 30 30 H 1.08997 * 109.46967 * 186.41223 * 1 2 3 31 31 H 1.08994 * 109.46763 * 66.40933 * 1 2 3 32 32 H 1.08998 * 109.47226 * 59.99780 * 6 4 3 33 33 H 1.09001 * 109.47271 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47143 * 300.00222 * 6 4 3 35 35 H 1.00892 * 110.99829 * 253.65824 * 7 4 3 36 36 H 1.08999 * 109.47149 * 299.99519 * 8 7 4 37 37 H 1.09000 * 109.47454 * 60.00105 * 8 7 4 38 38 H 0.96700 * 114.00112 * 60.00166 * 11 9 8 39 39 H 1.08997 * 109.47274 * 296.64418 * 12 9 8 40 40 H 1.09008 * 109.46846 * 56.63901 * 12 9 8 41 41 H 1.09002 * 109.47158 * 65.42722 * 14 13 12 42 42 H 1.08999 * 109.46884 * 185.43134 * 14 13 12 43 43 H 1.09005 * 109.47064 * 305.43060 * 14 13 12 44 44 H 1.09007 * 109.47195 * 289.99424 * 15 13 12 45 45 H 1.08996 * 109.47579 * 49.99587 * 15 13 12 46 46 H 0.96998 * 120.00414 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.52072 * 57.01662 * 24 3 2 48 48 H 1.08995 * 109.51847 * 177.20677 * 24 3 2 49 49 H 1.09003 * 109.45690 * 182.45065 * 25 24 3 50 50 H 1.08996 * 109.47340 * 62.44562 * 25 24 3 51 51 H 1.08991 * 109.48367 * 178.86165 * 27 26 25 52 52 H 1.09000 * 109.49096 * 58.82431 * 27 26 25 53 53 H 1.09000 * 109.52021 * 297.70142 * 28 27 26 54 54 H 1.08996 * 109.57361 * 177.54472 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6675 2.0183 -1.3097 5 1 2.1792 2.9801 -1.3445 6 6 2.1181 1.1578 -2.4917 7 7 0.2162 2.2326 -1.3852 8 6 -0.0931 3.6307 -1.7133 9 6 -1.6105 3.8146 -1.7824 10 1 -2.0315 3.0991 -2.4887 11 8 -2.1762 3.5958 -0.4885 12 6 -1.9312 5.2372 -2.2453 13 7 -3.3852 5.3893 -2.3891 14 6 -3.7623 6.8075 -2.4541 15 6 -3.8772 4.6593 -3.5650 16 6 -5.3838 4.6310 -3.5447 17 1 -5.9220 5.1073 -2.7386 18 6 -6.0751 3.9970 -4.5553 19 7 -5.4198 3.4174 -5.5371 20 14 -7.9425 3.9614 -4.5296 21 1 -8.4646 5.3513 -4.5550 22 1 -8.4400 3.2235 -5.7184 23 1 -8.4077 3.2803 -3.2947 24 6 3.5315 1.1891 0.1372 25 6 3.8646 0.5449 1.4875 26 8 3.2981 1.3271 2.5408 27 6 1.8738 1.4314 2.4891 28 6 1.4605 2.1112 1.1811 29 1 -0.3634 0.6100 0.8270 30 1 -0.3633 -1.0212 0.1148 31 1 -0.3633 0.4113 -0.9418 32 1 1.6066 0.1960 -2.4569 33 1 1.8743 1.6658 -3.4248 34 1 3.1950 0.9987 -2.4357 35 1 -0.2082 1.6029 -2.0495 36 1 0.3170 4.2839 -0.9431 37 1 0.3482 3.8839 -2.6773 38 1 -1.8464 4.1986 0.1920 39 1 -1.5622 5.9509 -1.5087 40 1 -1.4496 5.4242 -3.2052 41 1 -3.3546 7.2506 -3.3628 42 1 -4.8488 6.8945 -2.4633 43 1 -3.3633 7.3298 -1.5846 44 1 -3.5354 5.1585 -4.4718 45 1 -3.4943 3.6389 -3.5457 46 1 -5.9061 2.9717 -6.2482 47 1 3.9238 0.5708 -0.6703 48 1 3.9787 2.1818 0.0873 49 1 4.9467 0.4987 1.6107 50 1 3.4515 -0.4632 1.5210 51 1 1.5218 2.0236 3.3336 52 1 1.4343 0.4350 2.5354 53 1 1.8661 3.1226 1.1523 54 1 0.3731 2.1529 1.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566118605.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:38 Heat of formation + Delta-G solvation = -148.152932 kcal Electronic energy + Delta-G solvation = -30846.530194 eV Core-core repulsion = 26818.058204 eV Total energy + Delta-G solvation = -4028.471990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 330.235 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41937 -39.50566 -38.45902 -37.22271 -36.11919 -34.60648 -33.68748 -32.13097 -31.66088 -29.96110 -29.21039 -27.63206 -26.82865 -25.86536 -24.97916 -24.26518 -22.97366 -22.25855 -21.59580 -20.68610 -18.61490 -17.87132 -17.44354 -16.96836 -16.91414 -16.75654 -16.59839 -16.40843 -16.24130 -16.01058 -15.57379 -15.46529 -15.27562 -14.85870 -14.82165 -14.21157 -14.12457 -13.94531 -13.69169 -13.49971 -13.46394 -13.17521 -13.10292 -12.91543 -12.84353 -12.61105 -12.56766 -12.52351 -12.46960 -12.33017 -12.16838 -12.14572 -11.94876 -11.50073 -11.33997 -11.23735 -11.23285 -10.67321 -10.60374 -10.56724 -10.26836 -9.15934 -8.95311 -8.21133 -6.30187 1.39490 1.43021 1.50592 2.39703 2.86505 2.92096 3.04065 3.11570 3.38285 3.73847 3.79301 3.83295 3.94127 3.98926 4.12256 4.18408 4.21658 4.34094 4.37753 4.40421 4.46248 4.52667 4.56323 4.60602 4.66297 4.69078 4.72342 4.75606 4.77157 4.80888 4.86421 4.87791 4.95131 4.98459 5.06829 5.10953 5.11469 5.16270 5.24104 5.25609 5.30306 5.36288 5.37428 5.64266 6.02140 6.07236 6.25866 6.30486 6.34191 6.45542 6.65324 6.85335 7.14580 7.39123 8.89728 Molecular weight = 330.24amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.002537 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.158293 B =11033.128732 C =11320.098034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.131 3.869 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.167 4.167 7 N -0.672 5.672 8 C 0.040 3.960 9 C 0.129 3.871 10 H 0.059 0.941 11 O -0.550 6.550 12 C 0.026 3.974 13 N -0.542 5.542 14 C 0.041 3.959 15 C 0.210 3.790 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.270 1.270 24 C -0.140 4.140 25 C 0.062 3.938 26 O -0.402 6.402 27 C 0.063 3.937 28 C -0.167 4.167 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.377 0.623 39 H 0.096 0.904 40 H 0.023 0.977 41 H 0.007 0.993 42 H 0.053 0.947 43 H 0.082 0.918 44 H -0.043 1.043 45 H 0.006 0.994 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.049 0.951 51 H 0.099 0.901 52 H 0.045 0.955 53 H 0.074 0.926 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.378 -2.579 12.514 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.091 3.909 4 C -0.045 4.045 5 H 0.099 0.901 6 C -0.225 4.225 7 N -0.305 5.305 8 C -0.089 4.089 9 C 0.069 3.931 10 H 0.077 0.923 11 O -0.355 6.355 12 C -0.103 4.103 13 N -0.266 5.266 14 C -0.107 4.107 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.178 4.178 25 C -0.014 4.014 26 O -0.321 6.321 27 C -0.014 4.014 28 C -0.204 4.204 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.224 0.776 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.101 0.899 44 H -0.026 1.026 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.126 0.874 50 H 0.067 0.933 51 H 0.117 0.883 52 H 0.063 0.937 53 H 0.093 0.907 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.950 -3.325 13.258 24.183 hybrid contribution -0.608 0.717 -2.283 2.469 sum 19.342 -2.608 10.975 22.391 Atomic orbital electron populations 1.22938 0.80340 1.00944 1.02084 1.87820 1.20573 1.27410 1.94952 1.21517 0.92974 0.83192 0.93263 1.22195 0.88251 0.99067 0.95022 0.90079 1.22256 1.02907 1.00290 0.97035 1.61032 1.09894 1.04380 1.55167 1.22653 0.94916 0.91145 1.00217 1.21611 0.91535 0.94587 0.85390 0.92314 1.86643 1.69685 1.60892 1.18248 1.22822 0.88846 0.98654 1.00007 1.61946 1.11529 1.11260 1.41821 1.22213 1.01248 0.87943 0.99273 1.19371 0.94886 0.92233 0.85091 1.21445 0.92350 1.34632 1.07680 0.92211 1.25887 1.03846 0.94953 0.94968 1.70061 1.37611 1.37324 1.12516 0.85479 0.79201 0.78608 0.77607 1.19160 1.20762 1.19511 1.22275 0.93079 1.03265 0.99145 1.22635 0.99270 0.93710 0.85821 1.87871 1.21167 1.73041 1.50069 1.22576 0.80756 0.99996 0.98042 1.22581 1.03432 0.99757 0.94661 0.93609 0.91094 0.92326 0.92387 0.93111 0.90563 0.83932 0.88941 0.94572 0.77569 0.88585 0.95847 0.97487 0.92775 0.89895 1.02587 0.97572 0.92739 0.89266 0.89142 0.87421 0.93303 0.88286 0.93676 0.90706 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.74 113.37 1.10 1.82 16 2 O -0.39 -8.23 8.44 -148.98 -1.26 -9.49 16 3 C 0.13 2.31 0.36 -10.68 0.00 2.31 16 4 C 0.06 1.12 2.07 44.91 0.09 1.22 16 5 H 0.08 1.31 7.57 -2.39 -0.02 1.29 16 6 C -0.17 -2.84 8.60 71.98 0.62 -2.23 16 7 N -0.67 -13.91 3.23 -491.56 -1.59 -15.50 16 8 C 0.04 0.87 5.00 86.31 0.43 1.30 16 9 C 0.13 3.92 3.19 30.60 0.10 4.01 16 10 H 0.06 2.29 6.50 -2.39 -0.02 2.28 16 11 O -0.55 -17.07 13.21 -148.98 -1.97 -19.04 16 12 C 0.03 0.83 4.62 86.30 0.40 1.23 16 13 N -0.54 -23.00 4.63 -927.05 -4.29 -27.30 16 14 C 0.04 1.56 9.32 127.69 1.19 2.75 16 15 C 0.21 11.28 4.57 85.56 0.39 11.67 16 16 C -0.52 -30.17 8.53 25.60 0.22 -29.95 16 17 H 0.06 3.40 7.10 -2.91 -0.02 3.38 16 18 C 0.00 0.07 5.46 84.66 0.46 0.54 16 19 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.14 -2.08 4.84 30.75 0.15 -1.93 16 25 C 0.06 1.01 6.70 72.07 0.48 1.49 16 26 O -0.40 -8.18 10.77 -148.98 -1.60 -9.79 16 27 C 0.06 1.16 6.69 72.02 0.48 1.64 16 28 C -0.17 -2.98 4.24 30.69 0.13 -2.85 16 29 H 0.05 1.01 5.93 -2.39 -0.01 1.00 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.36 4.70 -2.39 -0.01 1.35 16 32 H 0.06 1.13 7.57 -2.39 -0.02 1.11 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.09 6.64 -2.39 -0.02 1.07 16 35 H 0.34 8.03 6.55 -89.70 -0.59 7.44 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.38 8.50 9.05 -74.06 -0.67 7.83 16 39 H 0.10 2.43 7.87 -2.39 -0.02 2.42 16 40 H 0.02 0.79 8.05 -2.38 -0.02 0.77 16 41 H 0.01 0.25 8.13 -2.39 -0.02 0.23 16 42 H 0.05 2.22 6.90 -2.39 -0.02 2.21 16 43 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 44 H -0.04 -2.54 8.11 -2.38 -0.02 -2.56 16 45 H 0.01 0.36 6.37 -2.39 -0.02 0.35 16 46 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.09 1.19 6.73 -2.39 -0.02 1.17 16 48 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 51 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.04 0.90 7.82 -2.39 -0.02 0.88 16 53 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.09 1.83 5.67 -2.39 -0.01 1.81 16 Total: -1.00 -68.13 404.83 -2.53 -70.66 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.37 Total: 26.88 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 6.25 Total: -6.97 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -5.60 Total: -99.23 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -4.83 Total: -38.31 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.13 -2.53 -70.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566118605.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.498 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds