Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00153 * 2 1 4 4 C 1.52999 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.54645 * 299.99690 * 4 3 2 6 6 N 1.46906 * 109.46978 * 59.82354 * 5 4 3 7 7 C 1.46901 * 110.99793 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 10 10 O 1.42900 * 109.47041 * 299.99294 * 8 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 12 12 N 1.46896 * 109.47098 * 185.00074 * 11 8 7 13 13 C 1.46906 * 111.00525 * 66.04331 * 12 11 8 14 14 C 1.46905 * 111.00329 * 189.99661 * 12 11 8 15 15 C 1.50695 * 109.47434 * 169.99785 * 14 12 11 16 16 H 1.08001 * 120.00290 * 359.97438 * 15 14 12 17 17 C 1.37874 * 119.99974 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00331 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46994 * 59.99543 * 19 17 15 21 21 H 1.48501 * 109.47030 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46845 * 299.99436 * 19 17 15 23 23 C 1.53187 * 109.61674 * 60.22335 * 4 3 2 24 24 C 1.53093 * 109.16342 * 176.89143 * 23 4 3 25 25 O 1.42908 * 109.41044 * 302.38843 * 24 23 4 26 26 C 1.42895 * 114.10027 * 61.16060 * 25 24 23 27 27 C 1.53091 * 109.41471 * 298.84055 * 26 25 24 28 28 H 1.08997 * 109.47355 * 300.00583 * 1 2 3 29 29 H 1.08998 * 109.46810 * 60.00103 * 1 2 3 30 30 H 1.08998 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47517 * 59.99280 * 3 2 1 32 32 H 1.08996 * 109.46750 * 299.99446 * 3 2 1 33 33 H 1.08995 * 109.46859 * 299.82646 * 5 4 3 34 34 H 1.09002 * 109.47639 * 179.82314 * 5 4 3 35 35 H 1.00899 * 110.99995 * 56.04730 * 6 5 4 36 36 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 37 37 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 38 38 H 0.96698 * 114.00516 * 300.00983 * 10 8 7 39 39 H 1.09008 * 109.46864 * 304.99696 * 11 8 7 40 40 H 1.09000 * 109.47679 * 64.99728 * 11 8 7 41 41 H 1.08990 * 109.46859 * 59.99881 * 13 12 11 42 42 H 1.08997 * 109.46943 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.46216 * 299.99856 * 13 12 11 44 44 H 1.08999 * 109.46712 * 289.99902 * 14 12 11 45 45 H 1.09006 * 109.47032 * 49.99602 * 14 12 11 46 46 H 0.97003 * 120.00476 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.51479 * 296.79164 * 23 4 3 48 48 H 1.08991 * 109.52190 * 56.98254 * 23 4 3 49 49 H 1.08997 * 109.48067 * 182.40688 * 24 23 4 50 50 H 1.09004 * 109.48979 * 62.37270 * 24 23 4 51 51 H 1.08998 * 109.48302 * 178.85421 * 26 25 24 52 52 H 1.09007 * 109.49210 * 58.82902 * 26 25 24 53 53 H 1.09002 * 109.51970 * 297.70211 * 27 26 25 54 54 H 1.09005 * 109.51982 * 177.51825 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9883 0.4258 1.2496 6 7 3.3882 -0.9151 1.2524 7 6 3.8013 -1.6743 2.4403 8 6 3.1583 -3.0622 2.4074 9 1 3.4788 -3.5900 1.5093 10 8 1.7356 -2.9280 2.3989 11 6 3.5880 -3.8527 3.6449 12 7 3.0689 -5.2239 3.5547 13 6 3.6933 -5.9511 2.4413 14 6 3.2552 -5.9420 4.8226 15 6 2.5004 -7.2455 4.7775 16 1 1.9380 -7.5136 3.8953 17 6 2.5267 -8.0953 5.8628 18 7 3.2111 -7.7688 6.9373 19 14 1.5915 -9.7115 5.8065 20 1 2.1053 -10.5420 4.6879 21 1 1.7798 -10.4372 7.0884 22 1 0.1465 -9.4401 5.5985 23 6 3.9921 0.4293 -1.2515 24 6 5.5220 0.3820 -1.2799 25 8 6.0390 1.7140 -1.2512 26 6 5.6838 2.4526 -0.0806 27 6 4.1604 2.5831 -0.0040 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.6697 0.9682 2.1397 34 1 5.0747 0.3376 1.2474 35 1 3.6161 -1.4150 0.4061 36 1 3.4811 -1.1462 3.3385 37 1 4.8864 -1.7770 2.4465 38 1 1.3794 -2.4666 3.1705 39 1 4.6764 -3.8791 3.6994 40 1 3.1910 -3.3721 4.5391 41 1 4.7714 -5.9949 2.5952 42 1 3.2907 -6.9630 2.3971 43 1 3.4805 -5.4345 1.5054 44 1 4.3160 -6.1415 4.9746 45 1 2.8788 -5.3324 5.6442 46 1 3.2300 -8.3669 7.7008 47 1 3.5966 -0.5862 -1.2286 48 1 3.6269 0.9436 -2.1404 49 1 5.8534 -0.1170 -2.1905 50 1 5.8850 -0.1676 -0.4114 51 1 6.1317 3.4452 -0.1273 52 1 6.0489 1.9303 0.8038 53 1 3.7987 3.1408 -0.8678 54 1 3.8853 3.1080 0.9109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574871150.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -156.183200 kcal Electronic energy + Delta-G solvation = -30271.622222 eV Core-core repulsion = 26242.802013 eV Total energy + Delta-G solvation = -4028.820208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 330.235 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.21631 -39.43681 -38.42275 -37.33281 -36.36121 -34.60861 -34.44010 -32.09589 -31.00621 -29.16549 -28.93030 -27.80929 -26.73032 -26.01976 -24.74662 -24.13632 -23.42057 -22.58705 -21.76522 -19.61358 -18.55824 -17.57476 -17.41529 -17.17016 -16.97018 -16.77762 -16.70878 -16.57363 -16.22853 -15.93710 -15.67914 -15.63360 -15.30279 -14.96464 -14.88328 -14.67336 -14.31133 -13.91916 -13.82135 -13.48064 -13.29623 -13.19702 -13.00508 -12.89831 -12.78921 -12.57572 -12.52228 -12.40436 -12.34562 -12.24640 -12.17543 -11.96526 -11.70789 -11.59164 -11.41923 -11.33083 -11.15895 -10.61635 -10.55182 -10.39024 -10.24887 -9.01989 -8.94280 -8.20804 -6.30822 1.40751 1.44264 1.52181 2.40216 2.89422 2.99491 3.09033 3.11722 3.46000 3.65838 3.79337 3.88185 3.93073 4.00301 4.09496 4.16984 4.24839 4.27107 4.34989 4.38757 4.48340 4.51437 4.55286 4.61696 4.66441 4.69558 4.70699 4.71239 4.73451 4.76532 4.79632 4.80851 4.85122 4.93707 5.01388 5.06410 5.08070 5.16198 5.16488 5.21123 5.26516 5.32137 5.34601 5.64485 6.04548 6.19318 6.25881 6.32721 6.57479 6.58821 6.65115 6.85122 7.10393 7.38850 8.90041 Molecular weight = 330.24amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002265 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.258941 B =12360.553129 C =12985.424489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.081 3.919 4 C -0.052 4.052 5 C 0.073 3.927 6 N -0.654 5.654 7 C 0.039 3.961 8 C 0.135 3.865 9 H 0.086 0.914 10 O -0.547 6.547 11 C 0.025 3.975 12 N -0.539 5.539 13 C 0.041 3.959 14 C 0.208 3.792 15 C -0.524 4.524 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.137 4.137 24 C 0.057 3.943 25 O -0.401 6.401 26 C 0.055 3.945 27 C -0.138 4.138 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.339 0.661 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.374 0.626 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.010 0.990 42 H 0.054 0.946 43 H 0.076 0.924 44 H -0.040 1.040 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.047 0.953 51 H 0.108 0.892 52 H 0.053 0.947 53 H 0.078 0.922 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 24.256 -16.425 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.004 3.996 4 C -0.052 4.052 5 C -0.056 4.056 6 N -0.286 5.286 7 C -0.092 4.092 8 C 0.074 3.926 9 H 0.104 0.896 10 O -0.352 6.352 11 C -0.104 4.104 12 N -0.263 5.263 13 C -0.107 4.107 14 C 0.082 3.918 15 C -0.562 4.562 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.175 4.175 24 C -0.019 4.019 25 O -0.321 6.321 26 C -0.021 4.021 27 C -0.177 4.177 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.221 0.779 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.095 0.905 44 H -0.022 1.022 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.118 0.882 50 H 0.065 0.935 51 H 0.126 0.874 52 H 0.071 0.929 53 H 0.097 0.903 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.263 24.018 -16.775 29.324 hybrid contribution 1.094 -0.831 1.264 1.867 sum 2.357 23.187 -15.511 27.996 Atomic orbital electron populations 1.22651 0.81869 1.02341 0.99307 1.88142 1.18611 1.26330 1.95065 1.22356 0.92321 0.85545 0.99373 1.20640 0.94059 0.95574 0.94954 1.22010 0.95701 0.90440 0.97478 1.60262 1.62154 1.02520 1.03682 1.22502 0.97138 0.94231 0.95279 1.21645 0.81846 0.92872 0.96196 0.89584 1.86563 1.19639 1.80922 1.48044 1.22851 0.97065 0.90755 0.99733 1.61937 1.57504 1.01777 1.05116 1.22221 0.95232 0.99177 0.94105 1.19387 0.92724 0.93028 0.86685 1.21438 1.30227 1.03498 1.01039 0.92098 1.25920 0.96567 1.02352 0.94852 1.70074 1.42989 1.38928 1.05596 0.85435 0.79124 0.78594 0.77469 1.19236 1.20707 1.19358 1.22115 0.95832 1.01918 0.97614 1.22693 0.93229 0.83635 1.02373 1.87908 1.74968 1.26260 1.42917 1.22740 0.94400 0.97243 0.87715 1.22144 0.96067 0.95370 1.04073 0.94563 0.94221 0.90475 0.93768 0.93767 0.91308 0.95337 0.84151 0.90747 0.94797 0.77866 0.95338 0.91591 0.97162 0.92665 0.90547 1.02242 0.97891 0.92659 0.90292 0.91203 0.88238 0.93457 0.87424 0.92896 0.90328 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 11.01 113.37 1.25 1.88 16 2 O -0.36 -7.40 7.97 -148.98 -1.19 -8.59 16 3 C 0.08 1.27 4.82 71.98 0.35 1.62 16 4 C -0.05 -0.73 0.52 -52.06 -0.03 -0.76 16 5 C 0.07 1.17 4.10 86.30 0.35 1.52 16 6 N -0.65 -13.00 4.20 -513.88 -2.16 -15.16 16 7 C 0.04 0.85 5.35 86.30 0.46 1.31 16 8 C 0.13 3.78 3.13 30.59 0.10 3.88 16 9 H 0.09 2.49 6.34 -2.39 -0.02 2.48 16 10 O -0.55 -17.04 13.15 -148.98 -1.96 -19.00 16 11 C 0.03 0.88 4.59 86.30 0.40 1.28 16 12 N -0.54 -23.94 4.70 -927.04 -4.36 -28.30 16 13 C 0.04 1.63 9.15 127.69 1.17 2.80 16 14 C 0.21 11.38 4.72 85.55 0.40 11.79 16 15 C -0.52 -30.49 8.46 25.60 0.22 -30.27 16 16 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 17 C 0.00 0.05 5.46 84.65 0.46 0.52 16 18 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 19 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.14 -2.05 4.49 30.69 0.14 -1.91 16 24 C 0.06 0.86 6.57 72.01 0.47 1.33 16 25 O -0.40 -6.93 10.77 -148.98 -1.60 -8.53 16 26 C 0.06 0.68 6.57 72.01 0.47 1.16 16 27 C -0.14 -1.52 4.92 30.68 0.15 -1.37 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.03 0.46 5.01 -2.39 -0.01 0.44 16 35 H 0.34 6.99 6.73 -89.69 -0.60 6.39 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.37 10.04 9.04 -74.06 -0.67 9.37 16 39 H 0.03 0.98 8.12 -2.38 -0.02 0.96 16 40 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 43 H 0.08 2.58 6.37 -2.39 -0.02 2.57 16 44 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 45 H 0.00 0.18 7.93 -2.38 -0.02 0.16 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.08 1.34 6.10 -2.38 -0.01 1.32 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.05 0.72 6.60 -2.38 -0.02 0.71 16 51 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.05 0.65 6.61 -2.38 -0.02 0.63 16 53 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -68.37 409.86 -2.99 -71.37 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.40 Total: 23.16 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.36 Total: -5.23 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.23 Total: -100.25 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -4.75 Total: -36.13 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.37 -2.99 -71.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574871150.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.814 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds