Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00442 * 2 1 4 4 C 1.52997 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46714 * 304.70746 * 4 3 2 6 6 O 1.42895 * 109.47210 * 64.70632 * 4 3 2 7 7 C 1.42900 * 114.00514 * 270.00338 * 6 4 3 8 8 C 1.50704 * 109.47116 * 184.70975 * 4 3 2 9 9 O 1.21283 * 119.99706 * 256.07452 * 8 4 3 10 10 N 1.34778 * 120.00260 * 76.07158 * 8 4 3 11 11 C 1.46500 * 119.99779 * 4.92604 * 10 8 4 12 12 C 1.50707 * 109.46971 * 264.42300 * 11 10 8 13 13 H 1.08000 * 119.99627 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99959 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99785 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99855 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47243 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47057 * 119.99819 * 16 14 12 19 19 H 1.48499 * 109.47303 * 239.99828 * 16 14 12 20 20 C 1.46495 * 119.99995 * 184.92125 * 10 8 4 21 21 C 1.52998 * 109.47034 * 270.00209 * 20 10 8 22 22 N 1.46898 * 109.47019 * 180.02562 * 21 20 10 23 23 C 1.47016 * 111.00078 * 293.63501 * 22 21 20 24 24 C 1.53102 * 109.25698 * 177.60736 * 23 22 21 25 25 O 1.43022 * 109.25913 * 56.85218 * 24 23 22 26 26 C 1.43017 * 113.73507 * 301.32849 * 25 24 23 27 27 C 1.47023 * 111.00260 * 169.99851 * 22 21 20 28 28 H 1.08998 * 109.47333 * 59.99380 * 1 2 3 29 29 H 1.09007 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46723 * 299.99384 * 1 2 3 31 31 H 1.09006 * 109.46562 * 60.00433 * 3 2 1 32 32 H 1.09002 * 109.47237 * 300.00573 * 3 2 1 33 33 H 1.09003 * 109.46502 * 300.00080 * 7 6 4 34 34 H 1.08998 * 109.46668 * 59.99425 * 7 6 4 35 35 H 1.08992 * 109.47227 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47459 * 24.42172 * 11 10 8 37 37 H 1.08999 * 109.47178 * 144.42144 * 11 10 8 38 38 H 0.97005 * 119.99554 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.46773 * 150.00437 * 20 10 8 40 40 H 1.09000 * 109.47231 * 30.00292 * 20 10 8 41 41 H 1.08995 * 109.47648 * 60.00072 * 21 20 10 42 42 H 1.09000 * 109.47180 * 300.00114 * 21 20 10 43 43 H 1.08999 * 109.50569 * 297.54060 * 23 22 21 44 44 H 1.08995 * 109.50466 * 57.67454 * 23 22 21 45 45 H 1.08998 * 109.50586 * 296.91177 * 24 23 22 46 46 H 1.09003 * 109.53808 * 176.80008 * 24 23 22 47 47 H 1.09007 * 109.50162 * 298.73516 * 26 25 24 48 48 H 1.08999 * 109.54231 * 178.63306 * 26 25 24 49 49 H 1.08997 * 109.50522 * 302.33327 * 27 22 21 50 50 H 1.09008 * 109.50260 * 62.41115 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8517 0.5724 0.8440 6 8 3.9644 0.5733 -1.2190 7 6 4.0458 -0.8520 -1.1571 8 6 4.1481 2.5565 0.1160 9 8 4.6318 3.0896 -0.8601 10 7 4.1586 3.1910 1.3050 11 6 3.6729 2.5057 2.5053 12 6 2.2303 2.8709 2.7432 13 1 1.7259 3.5463 2.0681 14 6 1.5548 2.3436 3.8233 15 7 2.1692 1.5215 4.6457 16 14 -0.2331 2.7969 4.1186 17 1 -0.6887 3.7310 3.0579 18 1 -1.0670 1.5684 4.0872 19 1 -0.3654 3.4511 5.4452 20 6 4.6556 4.5660 1.3972 21 6 6.1585 4.5469 1.6832 22 7 6.6568 5.9256 1.7762 23 6 6.5633 6.6084 0.4775 24 6 7.0356 8.0564 0.6331 25 8 8.3674 8.0647 1.1545 26 6 8.4947 7.4086 2.4189 27 6 8.0372 5.9541 2.2815 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6887 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 4.7573 -1.1420 -0.3839 34 1 3.0641 -1.2620 -0.9197 35 1 4.3776 -1.2391 -2.1204 36 1 3.7567 1.4277 2.3672 37 1 4.2711 2.8095 3.3643 38 1 1.6941 1.1508 5.4058 39 1 4.1388 5.0858 2.2039 40 1 4.4715 5.0828 0.4553 41 1 6.6754 4.0271 0.8766 42 1 6.3426 4.0301 2.6251 43 1 7.1936 6.0960 -0.2493 44 1 5.5287 6.5979 0.1345 45 1 6.3728 8.5837 1.3192 46 1 7.0220 8.5507 -0.3383 47 1 7.8743 7.9171 3.1569 48 1 9.5362 7.4338 2.7395 49 1 8.0784 5.4659 3.2551 50 1 8.6909 5.4305 1.5838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597022888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = -155.253770 kcal Electronic energy + Delta-G solvation = -30553.558674 eV Core-core repulsion = 26388.945674 eV Total energy + Delta-G solvation = -4164.613000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.83820 -39.35964 -37.65479 -36.53871 -35.97493 -34.91413 -32.73590 -31.29398 -30.84063 -29.24700 -27.40535 -26.71663 -26.10072 -25.33086 -24.04588 -23.11477 -23.09752 -21.57230 -20.33256 -18.62604 -17.05926 -16.78484 -16.57051 -16.42256 -16.14753 -15.85842 -15.39229 -15.21287 -15.10053 -14.95594 -14.67070 -14.61060 -14.53961 -14.15821 -13.72375 -13.50827 -13.19065 -12.98137 -12.53407 -12.39961 -12.33845 -12.05345 -11.96258 -11.57638 -11.47420 -11.41236 -11.28619 -11.13173 -10.98404 -10.91601 -10.73564 -10.68314 -10.41790 -10.18779 -9.92288 -9.70094 -9.40123 -9.13651 -8.95232 -8.63133 -8.36003 -7.87389 -6.31134 -4.37778 3.09819 3.12028 3.22240 3.23918 3.32651 3.77049 3.95619 4.18563 4.26640 4.57791 4.84756 4.99325 5.00994 5.01107 5.11782 5.22819 5.30593 5.43045 5.44744 5.50827 5.52344 5.56810 5.62236 5.65171 5.72975 5.75970 5.80070 5.82907 5.87211 5.93368 5.94940 5.97777 6.07400 6.14841 6.21673 6.39567 6.45732 6.61163 6.96709 6.99051 7.06777 7.09189 7.33147 7.53044 7.55232 7.61692 7.89729 8.16599 8.64330 8.85035 9.28437 10.75448 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.003894 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.783100 B = 7187.926570 C = 8923.359779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.389 6.389 3 C 0.031 3.969 4 C 0.084 3.916 5 H 0.094 0.906 6 O -0.367 6.367 7 C 0.031 3.969 8 C 0.521 3.479 9 O -0.549 6.549 10 N -0.592 5.592 11 C 0.232 3.768 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.882 5.882 16 Si 0.890 3.110 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.129 3.871 21 C 0.043 3.957 22 N -0.533 5.533 23 C 0.015 3.985 24 C 0.064 3.936 25 O -0.390 6.390 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 3.565 -4.293 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.308 6.308 3 C -0.045 4.045 4 C 0.023 3.977 5 H 0.112 0.888 6 O -0.285 6.285 7 C -0.065 4.065 8 C 0.308 3.692 9 O -0.427 6.427 10 N -0.324 5.324 11 C 0.112 3.888 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.134 4.134 15 N -0.520 5.520 16 Si 0.717 3.283 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.206 1.206 20 C 0.005 3.995 21 C -0.085 4.085 22 N -0.258 5.258 23 C -0.114 4.114 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.336 4.002 -4.546 8.071 hybrid contribution -1.064 -0.578 0.223 1.231 sum 4.272 3.423 -4.323 6.975 Atomic orbital electron populations 1.22651 0.81509 1.01953 0.99984 1.87737 1.19396 1.28063 1.95593 1.23429 0.91821 0.85535 1.03746 1.21884 0.93407 0.93574 0.88795 0.88838 1.87920 1.88126 1.19495 1.32941 1.22855 1.01151 0.81157 1.01387 1.19984 0.79471 0.86673 0.83115 1.90617 1.47066 1.67420 1.37600 1.48162 1.60930 1.14091 1.09206 1.19586 0.94942 0.92858 0.81409 1.21412 0.96096 1.29204 1.11216 0.91712 1.24919 0.98470 0.94553 0.95446 1.69916 1.36994 1.30213 1.14832 0.86559 0.84571 0.78551 0.78612 1.19501 1.20667 1.20611 1.21194 0.92193 0.83408 1.02709 1.22509 0.96800 0.87793 1.01443 1.62149 1.20335 1.17109 1.26235 1.22845 1.02654 0.95227 0.90642 1.22685 0.83653 0.95451 0.99457 1.87954 1.28883 1.77539 1.36438 1.22648 1.01443 0.91229 0.85881 1.22769 0.89235 0.97890 1.01140 0.94671 0.90229 0.93717 0.86901 0.93567 0.94563 0.92321 0.90296 0.94205 0.94247 0.92371 0.89119 0.91092 0.94420 0.90305 0.93863 0.89085 0.92196 0.88607 0.92196 0.88688 0.89536 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.01 101.05 1.11 1.66 16 2 O -0.39 -7.19 8.82 -40.39 -0.36 -7.54 16 3 C 0.03 0.61 5.50 37.16 0.20 0.82 16 4 C 0.08 1.69 2.15 -27.88 -0.06 1.63 16 5 H 0.09 1.88 6.01 -51.93 -0.31 1.56 16 6 O -0.37 -7.25 9.93 -59.49 -0.59 -7.84 16 7 C 0.03 0.48 10.70 101.05 1.08 1.56 16 8 C 0.52 11.06 6.95 -10.98 -0.08 10.99 16 9 O -0.55 -12.77 16.21 -13.82 -0.22 -13.00 16 10 N -0.59 -11.95 2.46 -175.06 -0.43 -12.38 16 11 C 0.23 5.14 4.83 -5.19 -0.03 5.11 16 12 C -0.54 -12.89 6.78 -34.44 -0.23 -13.13 16 13 H 0.06 1.57 7.56 -52.49 -0.40 1.17 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -22.93 13.29 55.43 0.74 -22.19 16 16 Si 0.89 19.29 29.54 -169.99 -5.02 14.27 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.13 2.31 5.32 -4.05 -0.02 2.28 16 21 C 0.04 0.70 5.28 -3.83 -0.02 0.68 16 22 N -0.53 -7.56 4.73 -234.31 -1.11 -8.67 16 23 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 24 C 0.06 0.75 7.01 37.21 0.26 1.01 16 25 O -0.39 -4.99 10.83 -35.23 -0.38 -5.38 16 26 C 0.07 0.71 7.01 37.20 0.26 0.97 16 27 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 2.41 4.60 -51.93 -0.24 2.17 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.93 5.86 -51.93 -0.30 0.62 16 37 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 40 H 0.07 1.29 5.87 -51.93 -0.30 0.98 16 41 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 50 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -28.93 395.27 -7.60 -36.52 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.52 Total: 4.65 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 2.35 Total: 15.60 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.80 Total: -43.24 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.55 Total: -33.76 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.93 -7.60 -36.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597022888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.731 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds