Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47064 * 2 1 4 4 C 1.52994 * 109.47441 * 239.99735 * 2 1 3 5 5 N 1.46901 * 109.47025 * 64.99993 * 4 2 1 6 6 C 1.46901 * 110.99891 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47083 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47237 * 305.00193 * 7 6 5 9 9 O 1.42896 * 109.46874 * 65.00412 * 7 6 5 10 10 C 1.53003 * 109.47160 * 185.00328 * 7 6 5 11 11 N 1.46904 * 109.47061 * 180.02562 * 10 7 6 12 12 C 1.46898 * 111.00078 * 293.95324 * 11 10 7 13 13 C 1.46898 * 110.99969 * 170.00002 * 11 10 7 14 14 C 1.50691 * 109.47280 * 189.99933 * 13 11 10 15 15 H 1.08006 * 119.99963 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00312 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00304 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47544 * 59.99593 * 18 16 14 20 20 H 1.48495 * 109.47405 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47033 * 299.99877 * 18 16 14 22 22 C 1.53005 * 109.47034 * 119.99699 * 2 1 3 23 23 C 1.53000 * 109.46831 * 294.02378 * 22 2 1 24 24 C 1.53006 * 109.62599 * 186.30390 * 23 22 2 25 25 O 1.43367 * 109.51461 * 306.62340 * 23 22 2 26 26 C 1.44185 * 107.29189 * 120.47435 * 25 23 22 27 27 C 1.54914 * 103.07716 * 21.43979 * 26 25 23 28 28 O 1.43755 * 109.63297 * 65.91507 * 23 22 2 29 29 H 1.09008 * 109.47041 * 68.81182 * 1 2 3 30 30 H 1.09002 * 109.47171 * 188.81146 * 1 2 3 31 31 H 1.09002 * 109.47184 * 308.81538 * 1 2 3 32 32 H 1.08999 * 109.47212 * 184.99974 * 4 2 1 33 33 H 1.08998 * 109.47146 * 305.00061 * 4 2 1 34 34 H 1.00901 * 111.00071 * 303.95331 * 5 4 2 35 35 H 1.08997 * 109.47726 * 300.00566 * 6 5 4 36 36 H 1.09008 * 109.47025 * 60.00153 * 6 5 4 37 37 H 0.96707 * 114.00203 * 60.00065 * 9 7 6 38 38 H 1.09004 * 109.46935 * 300.00050 * 10 7 6 39 39 H 1.08995 * 109.47168 * 60.00351 * 10 7 6 40 40 H 1.08997 * 109.47065 * 59.99617 * 12 11 10 41 41 H 1.08991 * 109.47364 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.47025 * 300.00537 * 12 11 10 43 43 H 1.09000 * 109.47070 * 310.00020 * 13 11 10 44 44 H 1.09002 * 109.46936 * 69.99761 * 13 11 10 45 45 H 0.97001 * 119.99746 * 180.02562 * 17 16 14 46 46 H 1.08996 * 109.47139 * 174.02641 * 22 2 1 47 47 H 1.08994 * 109.46919 * 54.02373 * 22 2 1 48 48 H 1.09006 * 109.47099 * 300.31069 * 24 23 22 49 49 H 1.08998 * 109.46971 * 180.30951 * 24 23 22 50 50 H 1.08999 * 109.47159 * 60.31110 * 24 23 22 51 51 H 1.09001 * 110.69908 * 263.04104 * 26 25 23 52 52 H 1.09004 * 110.84160 * 139.90313 * 26 25 23 53 53 H 1.09001 * 110.97819 * 206.33327 * 27 26 25 54 54 H 1.08999 * 110.98067 * 82.54475 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0374 -2.4456 6 6 2.1259 -0.6266 -3.6670 7 6 1.7025 0.1907 -4.8892 8 1 0.6233 0.3430 -4.8684 9 8 2.3629 1.4578 -4.8668 10 6 2.0868 -0.5623 -6.1644 11 7 1.6808 0.2228 -7.3378 12 6 0.2179 0.3271 -7.4210 13 6 2.2389 -0.3472 -8.5713 14 6 2.0120 0.6087 -9.7139 15 1 1.5036 1.5459 -9.5412 16 6 2.4525 0.2866 -10.9802 17 7 3.0711 -0.8547 -11.1907 18 14 2.1718 1.4719 -12.3964 19 1 2.8422 2.7637 -12.1012 20 1 2.7348 0.8951 -13.6436 21 1 0.7146 1.6990 -12.5704 22 6 2.0400 -0.7212 1.2493 23 6 1.6562 0.0816 2.4939 24 6 2.2970 -0.5507 3.7311 25 8 2.1136 1.4330 2.3520 26 6 0.9550 2.2878 2.4283 27 6 -0.0846 1.4045 3.1625 28 8 0.2263 0.0899 2.6416 29 1 -0.3633 0.3715 -0.9583 30 1 -0.3633 -1.0155 0.1574 31 1 -0.3633 0.6442 0.8007 32 1 3.1263 -0.7995 -1.2054 33 1 1.6054 -1.7198 -1.2950 34 1 0.6529 0.1792 -2.4753 35 1 3.2128 -0.7039 -3.6399 36 1 1.6922 -1.6247 -3.7299 37 1 3.3280 1.3987 -4.8834 38 1 3.1660 -0.7145 -6.1852 39 1 1.5831 -1.5287 -6.1815 40 1 -0.1630 0.8161 -6.5244 41 1 -0.0553 0.9127 -8.2987 42 1 -0.2135 -0.6707 -7.5017 43 1 3.3086 -0.5131 -8.4434 44 1 1.7475 -1.2957 -8.7881 45 1 3.3813 -1.0811 -12.0814 46 1 3.1247 -0.8148 1.1975 47 1 1.5919 -1.7133 1.3044 48 1 1.9484 -1.5782 3.8359 49 1 2.0176 0.0199 4.6168 50 1 3.3815 -0.5443 3.6220 51 1 0.6025 2.5490 1.4305 52 1 1.1733 3.1863 3.0057 53 1 -1.1009 1.6980 2.8998 54 1 0.0643 1.4418 4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819095344.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -165.528282 kcal Electronic energy + Delta-G solvation = -29185.306589 eV Core-core repulsion = 25156.081147 eV Total energy + Delta-G solvation = -4029.225442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 330.235 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.72508 -39.62040 -38.07004 -36.89539 -35.93857 -34.80665 -34.60981 -32.81254 -30.91521 -29.38784 -29.07189 -27.77372 -27.69165 -26.18716 -24.52396 -24.07535 -22.71240 -22.11636 -21.72905 -20.88198 -18.56410 -18.53455 -17.60787 -17.39713 -17.02088 -16.80064 -16.67491 -16.24448 -15.97351 -15.90852 -15.55485 -15.24342 -14.98210 -14.81412 -14.53629 -14.47141 -14.15589 -13.85496 -13.76843 -13.68565 -13.52714 -13.24007 -13.13278 -13.03031 -12.95281 -12.81140 -12.66343 -12.57183 -12.53012 -12.38792 -12.24801 -12.04494 -11.96723 -11.65570 -11.61014 -11.56730 -11.39881 -10.91281 -10.68951 -10.61585 -10.37345 -9.31658 -8.96291 -8.20788 -6.30795 1.40962 1.44475 1.52442 2.40262 2.51307 2.90331 3.03660 3.11442 3.41541 3.69795 3.72380 3.80047 3.88387 3.91791 4.02553 4.09346 4.18825 4.19421 4.31057 4.35023 4.37711 4.45363 4.52230 4.53936 4.61323 4.67022 4.71229 4.71951 4.75682 4.76196 4.77742 4.80623 4.84476 4.97643 5.03913 5.05974 5.08542 5.14650 5.17148 5.18108 5.22825 5.30779 5.43499 5.51759 5.64315 6.02998 6.07984 6.20998 6.31990 6.43381 6.63480 6.84962 7.04246 7.38766 8.89933 Molecular weight = 330.24amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.001689 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.112981 B =16569.841549 C =16806.313700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.068 0.932 4 C 0.067 3.933 5 N -0.686 5.686 6 C 0.038 3.962 7 C 0.131 3.869 8 H 0.089 0.911 9 O -0.553 6.553 10 C 0.024 3.976 11 N -0.539 5.539 12 C 0.041 3.959 13 C 0.207 3.793 14 C -0.525 4.525 15 H 0.061 0.939 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.115 4.115 23 C 0.252 3.748 24 C -0.169 4.169 25 O -0.394 6.394 26 C 0.014 3.986 27 C 0.012 3.988 28 O -0.378 6.378 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.341 0.659 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.378 0.622 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.011 0.989 43 H 0.004 0.996 44 H -0.039 1.039 45 H 0.265 0.735 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.114 0.886 53 H 0.124 0.876 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 0.949 33.638 34.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.086 0.914 4 C -0.062 4.062 5 N -0.318 5.318 6 C -0.092 4.092 7 C 0.070 3.930 8 H 0.107 0.893 9 O -0.358 6.358 10 C -0.105 4.105 11 N -0.263 5.263 12 C -0.107 4.107 13 C 0.081 3.919 14 C -0.563 4.563 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.154 4.154 23 C 0.175 3.825 24 C -0.226 4.226 25 O -0.316 6.316 26 C -0.062 4.062 27 C -0.064 4.064 28 O -0.299 6.299 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.022 0.978 44 H -0.022 1.022 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.092 0.908 52 H 0.132 0.868 53 H 0.142 0.858 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.121 1.834 33.528 33.966 hybrid contribution -0.305 -1.563 -1.194 1.991 sum -5.426 0.271 32.334 32.787 Atomic orbital electron populations 1.21983 0.94675 1.02044 1.01436 1.20939 0.96267 0.99830 0.92618 0.91356 1.21984 1.00399 0.94455 0.89348 1.60376 1.20004 1.50323 1.01088 1.22532 1.01390 0.95470 0.89827 1.21712 0.97254 0.83716 0.90276 0.89270 1.86543 1.23969 1.28704 1.96631 1.22838 1.00810 0.94850 0.92041 1.61926 1.10315 1.51365 1.02711 1.22217 0.87667 0.98931 1.01925 1.19397 0.93278 0.92145 0.87072 1.21442 1.37239 1.04433 0.93189 0.92082 1.25928 0.94831 0.97221 1.01768 1.70078 1.40200 1.24158 1.23046 0.85418 0.78784 0.78768 0.77537 1.19387 1.20702 1.19273 1.21962 1.02030 0.99041 0.92326 1.23440 0.79750 0.83960 0.95336 1.22356 1.01975 1.01816 0.96498 1.88886 1.31516 1.16607 1.94545 1.24348 0.85040 0.95125 1.01649 1.24515 1.01480 0.80971 0.99401 1.89293 1.21651 1.34129 1.84831 0.93537 0.93266 0.91061 0.91313 0.95105 0.83901 0.90259 0.93992 0.77445 0.91357 0.95068 0.90610 0.92640 0.97100 0.97782 1.02170 0.92672 0.89784 0.89813 0.90025 0.91615 0.90505 0.90820 0.86803 0.85815 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.21 71.98 0.59 -1.75 16 2 C -0.08 -1.32 2.46 -10.80 -0.03 -1.35 16 3 H 0.07 1.43 7.31 -2.38 -0.02 1.41 16 4 C 0.07 1.22 5.14 86.30 0.44 1.66 16 5 N -0.69 -14.65 6.45 -513.89 -3.31 -17.97 16 6 C 0.04 0.86 5.32 86.30 0.46 1.32 16 7 C 0.13 3.72 3.02 30.60 0.09 3.81 16 8 H 0.09 2.56 6.55 -2.38 -0.02 2.55 16 9 O -0.55 -17.68 13.15 -148.98 -1.96 -19.64 16 10 C 0.02 0.84 4.62 86.30 0.40 1.24 16 11 N -0.54 -23.98 4.62 -927.07 -4.28 -28.27 16 12 C 0.04 1.64 9.14 127.69 1.17 2.81 16 13 C 0.21 11.34 4.72 85.55 0.40 11.75 16 14 C -0.52 -30.58 8.46 25.60 0.22 -30.37 16 15 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 16 C 0.00 0.02 5.46 84.65 0.46 0.49 16 17 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C -0.12 -1.71 4.31 30.60 0.13 -1.58 16 23 C 0.25 3.71 1.04 30.60 0.03 3.74 16 24 C -0.17 -1.97 9.20 71.98 0.66 -1.31 16 25 O -0.39 -6.68 9.81 -126.22 -1.24 -7.92 16 26 C 0.01 0.16 7.61 72.64 0.55 0.72 16 27 C 0.01 0.11 7.32 72.64 0.53 0.64 16 28 O -0.38 -5.52 8.27 -126.22 -1.04 -6.56 16 29 H 0.05 0.78 6.33 -2.38 -0.02 0.76 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.07 1.12 4.47 -2.39 -0.01 1.11 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.34 7.08 6.83 -89.69 -0.61 6.47 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.38 10.31 9.05 -74.05 -0.67 9.64 16 38 H 0.07 2.40 7.93 -2.38 -0.02 2.38 16 39 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 40 H 0.08 2.58 6.47 -2.39 -0.02 2.57 16 41 H 0.05 2.42 6.76 -2.39 -0.02 2.40 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.00 0.24 7.93 -2.39 -0.02 0.22 16 44 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 45 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.15 8.11 -2.39 -0.02 1.13 16 48 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 0.90 7.72 -2.39 -0.02 0.89 16 52 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 53 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -69.72 415.41 -3.82 -73.53 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.41 Total: 24.55 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 6.12 Total: -8.18 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -7.31 Total: -102.94 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -4.24 Total: -34.12 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.72 -3.82 -73.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819095344.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.995 kcal (2) G-P(sol) polarization free energy of solvation -69.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds