Wall clock time and date at job start Tue Mar 31 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46777 * 2 1 4 4 C 1.52994 * 109.47252 * 120.00516 * 2 1 3 5 5 N 1.46904 * 109.46890 * 294.99806 * 4 2 1 6 6 C 1.46902 * 110.99800 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47089 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47340 * 305.00103 * 7 6 5 9 9 O 1.42904 * 109.46946 * 65.00250 * 7 6 5 10 10 C 1.52998 * 109.47007 * 184.99957 * 7 6 5 11 11 N 1.46908 * 109.46818 * 180.02562 * 10 7 6 12 12 C 1.46902 * 110.99783 * 293.95355 * 11 10 7 13 13 C 1.46903 * 110.99928 * 170.00232 * 11 10 7 14 14 C 1.50694 * 109.47136 * 190.00072 * 13 11 10 15 15 H 1.08003 * 119.99799 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00271 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00000 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00466 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46983 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47065 * 119.99842 * 18 16 14 21 21 H 1.48501 * 109.47058 * 240.00142 * 18 16 14 22 22 C 1.53001 * 109.47005 * 240.00358 * 2 1 3 23 23 C 1.53005 * 109.47087 * 66.28881 * 22 2 1 24 24 C 1.52993 * 109.62982 * 54.39486 * 23 22 2 25 25 O 1.43365 * 109.51004 * 174.71192 * 23 22 2 26 26 C 1.44193 * 107.28661 * 120.47087 * 25 23 22 27 27 C 1.54908 * 103.07842 * 21.43951 * 26 25 23 28 28 O 1.43758 * 109.62834 * 294.00278 * 23 22 2 29 29 H 1.09004 * 109.47078 * 172.23845 * 1 2 3 30 30 H 1.08996 * 109.47239 * 292.23616 * 1 2 3 31 31 H 1.08998 * 109.47620 * 52.24181 * 1 2 3 32 32 H 1.08994 * 109.47465 * 54.99811 * 4 2 1 33 33 H 1.09002 * 109.47155 * 175.00041 * 4 2 1 34 34 H 1.00896 * 110.99935 * 56.04980 * 5 4 2 35 35 H 1.08999 * 109.47511 * 300.00042 * 6 5 4 36 36 H 1.08996 * 109.47052 * 60.00092 * 6 5 4 37 37 H 0.96695 * 114.00471 * 59.99528 * 9 7 6 38 38 H 1.09007 * 109.47141 * 299.99693 * 10 7 6 39 39 H 1.08994 * 109.47571 * 60.00562 * 10 7 6 40 40 H 1.08995 * 109.46949 * 60.00072 * 12 11 10 41 41 H 1.09000 * 109.47247 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46789 * 299.99960 * 12 11 10 43 43 H 1.09006 * 109.47029 * 309.99544 * 13 11 10 44 44 H 1.08993 * 109.47470 * 69.99420 * 13 11 10 45 45 H 0.96998 * 120.00127 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.47330 * 306.29005 * 22 2 1 47 47 H 1.09002 * 109.47012 * 186.28182 * 22 2 1 48 48 H 1.09000 * 109.47593 * 300.31171 * 24 23 22 49 49 H 1.08998 * 109.47570 * 180.31017 * 24 23 22 50 50 H 1.09008 * 109.47155 * 60.31000 * 24 23 22 51 51 H 1.08996 * 110.70203 * 263.04082 * 26 25 23 52 52 H 1.09000 * 110.84393 * 139.90233 * 26 25 23 53 53 H 1.08995 * 110.98424 * 206.32433 * 27 26 25 54 54 H 1.09005 * 110.97839 * 82.54113 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 0.0373 2.4456 6 6 2.1258 -0.6267 3.6670 7 6 1.7035 0.1913 4.8891 8 1 2.0631 1.2148 4.7832 9 8 0.2781 0.1952 4.9903 10 6 2.3027 -0.4316 6.1516 11 7 1.8967 0.3535 7.3250 12 6 2.4841 1.6994 7.2868 13 6 2.2506 -0.3402 8.5707 14 6 1.6086 0.3644 9.7378 15 1 0.9990 1.2401 9.5710 16 6 1.7994 -0.1090 11.0186 17 7 2.5414 -1.1757 11.2217 18 14 1.0042 0.7648 12.4656 19 1 0.2261 1.9299 11.9734 20 1 0.0968 -0.1741 13.1728 21 1 2.0582 1.2335 13.4008 22 6 2.0400 -0.7212 -1.2493 23 6 1.6630 0.0856 -2.4935 24 6 2.1781 1.5193 -2.3520 25 8 2.2455 -0.5231 -3.6535 26 6 1.1648 -0.8763 -4.5404 27 6 0.0133 0.0500 -4.0759 28 8 0.2336 0.0988 -2.6458 29 1 -0.3633 -1.0183 -0.1388 30 1 -0.3633 0.3889 0.9512 31 1 -0.3634 0.6292 -0.8124 32 1 1.6054 -1.7198 1.2950 33 1 3.1263 -0.7995 1.2054 34 1 0.6529 0.1791 2.4753 35 1 1.6922 -1.6248 3.7299 36 1 3.2127 -0.7039 3.6399 37 1 -0.1118 -0.6844 5.0870 38 1 1.9430 -1.4552 6.2576 39 1 3.3899 -0.4346 6.0745 40 1 2.1494 2.2164 6.3875 41 1 2.1678 2.2590 8.1671 42 1 3.5713 1.6211 7.2777 43 1 1.8945 -1.3695 8.5271 44 1 3.3335 -0.3353 8.6942 45 1 2.6759 -1.5085 12.1228 46 1 1.5876 -1.7112 -1.3075 47 1 3.1242 -0.8196 -1.1949 48 1 1.7347 1.9792 -1.4688 49 1 1.9035 2.0931 -3.2370 50 1 3.2633 1.5070 -2.2492 51 1 0.8906 -1.9238 -4.4156 52 1 1.4307 -0.6700 -5.5771 53 1 -0.9576 -0.3886 -4.3064 54 1 0.1070 1.0414 -4.5193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819095345.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:56 Heat of formation + Delta-G solvation = -166.847983 kcal Electronic energy + Delta-G solvation = -28947.578422 eV Core-core repulsion = 24918.295754 eV Total energy + Delta-G solvation = -4029.282668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 330.235 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61970 -39.68103 -38.26235 -37.04685 -35.96932 -35.02782 -34.61649 -32.27185 -30.81704 -29.41904 -29.04440 -28.01291 -27.71778 -26.21902 -24.56840 -24.10176 -22.66168 -22.33568 -21.73156 -20.61965 -18.57340 -18.12590 -17.93438 -17.39042 -17.18986 -16.73696 -16.69116 -16.40763 -15.96748 -15.69232 -15.59919 -15.29983 -15.21810 -14.80868 -14.74914 -14.24659 -14.11162 -13.93795 -13.81587 -13.74983 -13.45084 -13.29928 -13.16414 -13.06379 -12.94598 -12.76660 -12.67500 -12.56268 -12.52490 -12.35983 -12.17489 -12.01867 -11.85987 -11.65881 -11.59041 -11.47253 -11.37557 -11.06892 -10.73941 -10.62681 -10.50180 -9.35884 -8.95842 -8.21054 -6.30876 1.40939 1.41487 1.55686 2.40281 2.47109 2.85124 3.04444 3.11580 3.44781 3.69806 3.71348 3.76615 3.84322 3.99713 4.03644 4.08324 4.15986 4.18838 4.26927 4.31240 4.34374 4.45732 4.52229 4.57018 4.62169 4.66983 4.70232 4.71503 4.73646 4.76020 4.80816 4.83020 4.87716 4.95490 5.04866 5.07287 5.08318 5.15743 5.17656 5.19164 5.21866 5.32393 5.46070 5.57750 5.65012 6.03013 6.07898 6.18094 6.32673 6.46956 6.63679 6.85556 6.95912 7.38977 8.90141 Molecular weight = 330.24amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.001591 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.868312 B =17589.515204 C =17706.129718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.083 0.917 4 C 0.066 3.934 5 N -0.689 5.689 6 C 0.038 3.962 7 C 0.129 3.871 8 H 0.095 0.905 9 O -0.560 6.560 10 C 0.024 3.976 11 N -0.538 5.538 12 C 0.041 3.959 13 C 0.206 3.794 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.278 1.278 22 C -0.111 4.111 23 C 0.254 3.746 24 C -0.173 4.173 25 O -0.401 6.401 26 C 0.015 3.985 27 C 0.006 3.994 28 O -0.376 6.376 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.347 0.653 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.379 0.621 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.010 0.990 43 H 0.004 0.996 44 H -0.039 1.039 45 H 0.264 0.736 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.117 0.883 53 H 0.125 0.875 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 0.954 -34.661 34.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.063 4.063 5 N -0.323 5.323 6 C -0.092 4.092 7 C 0.069 3.931 8 H 0.113 0.887 9 O -0.365 6.365 10 C -0.105 4.105 11 N -0.262 5.262 12 C -0.107 4.107 13 C 0.080 3.920 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.150 4.150 23 C 0.178 3.822 24 C -0.230 4.230 25 O -0.323 6.323 26 C -0.061 4.061 27 C -0.070 4.070 28 O -0.297 6.297 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.023 0.977 44 H -0.022 1.022 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.135 0.865 53 H 0.143 0.857 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.691 1.937 -34.488 34.647 hybrid contribution 0.165 -1.467 1.066 1.821 sum -2.526 0.470 -33.422 33.521 Atomic orbital electron populations 1.21884 0.94627 1.01819 1.01584 1.21089 0.96422 1.00183 0.92168 0.89888 1.21982 1.00551 0.94503 0.89278 1.60412 1.20815 1.49997 1.01044 1.22498 1.01365 0.95455 0.89865 1.21779 0.80997 1.00036 0.90319 0.88718 1.86558 1.19362 1.34770 1.95852 1.22823 0.97853 0.97876 0.91949 1.61939 1.59276 1.03103 1.01895 1.22215 0.95497 0.91093 1.01922 1.19412 0.92060 0.93407 0.87127 1.21506 1.30239 1.12798 0.91576 0.92083 1.25918 0.95898 0.95870 1.02027 1.70089 1.40402 1.24683 1.22388 0.85314 0.78213 0.78594 0.78369 1.18881 1.20300 1.20336 1.21880 1.02008 0.98949 0.92129 1.23384 0.78543 0.93263 0.87037 1.22435 1.02605 0.94527 1.03419 1.88877 1.32144 1.80245 1.31016 1.24360 0.86019 0.99862 0.95817 1.24594 1.01142 1.00540 0.80701 1.89364 1.21715 1.95065 1.23527 0.93505 0.93203 0.91013 0.95313 0.90930 0.83233 0.94226 0.89979 0.77362 0.91421 0.94955 0.90623 0.92679 0.97104 0.97742 1.02154 0.92687 0.91396 0.89762 0.89921 0.91716 0.90624 0.90353 0.86532 0.85670 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.25 71.98 0.59 -1.77 16 2 C -0.08 -1.27 2.28 -10.80 -0.02 -1.29 16 3 H 0.08 1.39 5.98 -2.39 -0.01 1.38 16 4 C 0.07 1.15 5.14 86.30 0.44 1.59 16 5 N -0.69 -14.25 6.50 -513.89 -3.34 -17.59 16 6 C 0.04 0.85 5.36 86.30 0.46 1.31 16 7 C 0.13 3.61 3.08 30.59 0.09 3.70 16 8 H 0.10 2.84 6.55 -2.39 -0.02 2.83 16 9 O -0.56 -16.58 12.72 -148.98 -1.90 -18.48 16 10 C 0.02 0.84 4.62 86.30 0.40 1.24 16 11 N -0.54 -23.82 4.62 -927.03 -4.28 -28.10 16 12 C 0.04 1.66 9.14 127.69 1.17 2.82 16 13 C 0.21 11.25 4.72 85.55 0.40 11.65 16 14 C -0.52 -30.41 8.46 25.60 0.22 -30.20 16 15 H 0.06 3.53 7.12 -2.91 -0.02 3.50 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 C -0.11 -1.70 4.48 30.60 0.14 -1.56 16 23 C 0.25 3.88 1.13 30.59 0.03 3.92 16 24 C -0.17 -2.37 8.71 71.98 0.63 -1.74 16 25 O -0.40 -6.53 10.86 -126.22 -1.37 -7.90 16 26 C 0.02 0.15 8.07 72.63 0.59 0.73 16 27 C 0.01 0.05 7.92 72.63 0.57 0.63 16 28 O -0.38 -5.64 7.81 -126.22 -0.99 -6.62 16 29 H 0.05 0.79 8.11 -2.38 -0.02 0.77 16 30 H 0.05 0.87 6.37 -2.39 -0.02 0.85 16 31 H 0.07 1.25 5.84 -2.39 -0.01 1.23 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.35 7.35 6.41 -89.70 -0.57 6.77 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.38 9.17 9.05 -74.06 -0.67 8.50 16 38 H 0.07 2.34 7.93 -2.38 -0.02 2.32 16 39 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 40 H 0.08 2.63 6.47 -2.39 -0.02 2.61 16 41 H 0.05 2.41 6.76 -2.39 -0.02 2.40 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.00 0.26 7.93 -2.38 -0.02 0.24 16 44 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 47 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.14 6.20 -2.39 -0.01 1.13 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 53 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -69.04 414.56 -3.75 -72.79 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.37 Total: 23.89 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 6.18 Total: -8.47 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -7.34 Total: -102.31 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -4.25 Total: -33.00 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.04 -3.75 -72.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819095345.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.058 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds