Wall clock time and date at job start Tue Mar 31 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00317 * 2 1 4 4 H 1.48498 * 109.46647 * 274.81076 * 3 2 1 5 5 H 1.48495 * 109.47020 * 34.80607 * 3 2 1 6 6 H 1.48497 * 109.47112 * 154.81199 * 3 2 1 7 7 C 1.38810 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 170.81043 * 7 2 1 9 9 N 1.36940 * 120.00132 * 350.82237 * 7 2 1 10 10 C 1.48144 * 127.83858 * 164.38665 * 9 7 2 11 11 C 1.54382 * 104.61995 * 140.41287 * 10 9 7 12 12 H 1.08998 * 117.62122 * 242.76531 * 11 10 9 13 13 C 1.53001 * 118.12464 * 87.18737 * 11 10 9 14 14 H 1.08998 * 117.44436 * 16.06255 * 13 11 10 15 15 C 1.53003 * 117.44405 * 160.81083 * 13 11 10 16 16 N 1.46495 * 109.47135 * 185.16625 * 15 13 11 17 17 C 1.34776 * 119.99969 * 180.02562 * 16 15 13 18 18 O 1.21277 * 119.99875 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99949 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.69355 * 300.34187 * 19 17 16 21 21 C 1.53255 * 109.58210 * 180.02562 * 19 17 16 22 22 C 1.53150 * 109.50544 * 189.85402 * 21 19 17 23 23 C 1.53397 * 109.23913 * 69.47714 * 22 21 19 24 24 C 1.51046 * 108.20254 * 311.14574 * 23 22 21 25 25 N 1.30093 * 127.38994 * 196.04088 * 24 23 22 26 26 C 1.34290 * 109.20839 * 179.97438 * 25 24 23 27 27 C 1.34856 * 108.07473 * 359.97438 * 26 25 24 28 28 N 1.35422 * 123.98156 * 16.01479 * 24 23 22 29 29 C 1.52998 * 60.49620 * 268.43668 * 13 11 10 30 30 H 1.09001 * 119.54272 * 248.24902 * 29 13 11 31 31 C 1.48143 * 127.83449 * 344.38074 * 9 7 2 32 32 H 0.97002 * 119.99538 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.40813 * 21.62561 * 10 9 7 34 34 H 1.09005 * 110.40688 * 259.19443 * 10 9 7 35 35 H 1.09003 * 109.46859 * 65.17187 * 15 13 11 36 36 H 1.08995 * 109.47138 * 305.17152 * 15 13 11 37 37 H 0.97000 * 120.00185 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.47002 * 69.84477 * 21 19 17 39 39 H 1.09001 * 109.46467 * 309.85841 * 21 19 17 40 40 H 1.08997 * 109.51329 * 309.54811 * 22 21 19 41 41 H 1.09006 * 109.55061 * 189.42502 * 22 21 19 42 42 H 1.09004 * 109.71703 * 70.81797 * 23 22 21 43 43 H 1.08994 * 109.72135 * 191.46735 * 23 22 21 44 44 H 1.08001 * 125.96019 * 179.97438 * 26 25 24 45 45 H 1.08000 * 126.65454 * 180.02562 * 27 26 25 46 46 H 1.08993 * 110.41237 * 338.37661 * 31 9 7 47 47 H 1.09001 * 110.40682 * 100.68843 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3961 2.1050 -1.3952 5 1 1.5023 2.6212 0.7991 6 1 3.5950 1.4129 0.5958 7 6 2.0102 -1.2022 0.0005 8 1 3.0798 -1.2083 -0.1488 9 7 1.3386 -2.3804 0.1902 10 6 1.8189 -3.7546 -0.0844 11 6 1.2875 -4.5963 1.0957 12 1 2.0203 -5.0693 1.7495 13 6 -0.1172 -5.1918 0.9820 14 1 -0.5692 -5.2268 -0.0092 15 6 -0.4648 -6.3603 1.9065 16 7 -1.7956 -6.8710 1.5688 17 6 -2.3144 -7.9072 2.2570 18 8 -1.6796 -8.4165 3.1562 19 6 -3.6832 -8.4330 1.9092 20 1 -4.4219 -7.6402 2.0266 21 6 -4.0345 -9.6029 2.8349 22 6 -5.3055 -10.2914 2.3289 23 6 -4.9971 -11.0186 1.0139 24 6 -4.2680 -10.0588 0.1037 25 7 -4.0838 -10.1721 -1.1792 26 6 -3.3885 -9.1116 -1.6211 27 6 -3.1334 -8.3099 -0.5671 28 7 -3.6889 -8.9090 0.5239 29 6 0.0680 -3.8155 1.6242 30 1 -0.1159 -3.6912 2.6913 31 6 -0.0331 -2.5699 0.7167 32 1 -0.4849 0.8401 -0.0004 33 1 2.9084 -3.7788 -0.1082 34 1 1.4091 -4.1195 -1.0263 35 1 -0.4586 -6.0188 2.9417 36 1 0.2716 -7.1540 1.7814 37 1 -2.3035 -6.4635 0.8499 38 1 -4.2015 -9.2293 3.8451 39 1 -3.2126 -10.3187 2.8435 40 1 -6.0810 -9.5447 2.1587 41 1 -5.6503 -11.0117 3.0709 42 1 -4.3683 -11.8866 1.2124 43 1 -5.9270 -11.3374 0.5431 44 1 -3.0865 -8.9321 -2.6423 45 1 -2.5933 -7.3748 -0.5842 46 1 -0.3410 -1.7003 1.2971 47 1 -0.7326 -2.7476 -0.1002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978274660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:54 Heat of formation + Delta-G solvation = 66.773342 kcal Electronic energy + Delta-G solvation = -27928.646366 eV Core-core repulsion = 24113.262855 eV Total energy + Delta-G solvation = -3815.383511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -43.49609 -41.07912 -40.29395 -37.40733 -36.45641 -35.23058 -34.26635 -32.70299 -30.91587 -29.79360 -29.05175 -28.81330 -26.96855 -25.39241 -23.22595 -23.02133 -22.39114 -22.25207 -21.26117 -20.86880 -20.00106 -18.89195 -18.72822 -18.17591 -17.32313 -16.84208 -16.44026 -16.12742 -15.92439 -15.72637 -15.40073 -15.32192 -15.03632 -14.87292 -14.68663 -14.61118 -14.25608 -14.08546 -13.77231 -13.38955 -13.20426 -13.04501 -12.93015 -12.72795 -12.40323 -12.33012 -12.04353 -12.03341 -11.99024 -11.95904 -11.77077 -11.55149 -11.00555 -10.96817 -10.74662 -10.66280 -10.51514 -10.20443 -9.35536 -8.91637 -7.93662 -5.29264 0.88371 1.07344 1.45607 1.46457 1.56352 1.83534 1.95663 2.12090 2.46603 2.69342 3.11942 3.24454 3.41365 3.47651 3.54093 3.65633 3.69129 3.80545 3.81387 4.12167 4.12712 4.21148 4.23537 4.41493 4.42074 4.50166 4.52786 4.61922 4.63521 4.65323 4.79995 4.89220 4.90363 4.97886 5.00796 5.06330 5.08443 5.23464 5.27355 5.31750 5.32844 5.43816 5.51918 5.65514 5.74605 6.09993 6.16990 6.23210 6.88070 7.00297 7.07643 7.67125 8.44975 9.20051 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002261 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.142385 B =12380.351711 C =12771.971590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.621 5.621 10 C 0.147 3.853 11 C -0.158 4.158 12 H 0.127 0.873 13 C -0.113 4.113 14 H 0.110 0.890 15 C 0.163 3.837 16 N -0.710 5.710 17 C 0.510 3.490 18 O -0.556 6.556 19 C 0.120 3.880 20 H 0.142 0.858 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.037 4.037 24 C 0.206 3.794 25 N -0.524 5.524 26 C -0.045 4.045 27 C -0.060 4.060 28 N -0.451 5.451 29 C -0.173 4.173 30 H 0.112 0.888 31 C 0.188 3.812 32 H 0.250 0.750 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.183 0.817 45 H 0.190 0.810 46 H 0.052 0.948 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -21.252 5.659 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.345 5.345 10 C 0.022 3.978 11 C -0.178 4.178 12 H 0.145 0.855 13 C -0.132 4.132 14 H 0.128 0.872 15 C 0.039 3.961 16 N -0.363 5.363 17 C 0.294 3.706 18 O -0.433 6.433 19 C 0.014 3.986 20 H 0.159 0.841 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.076 4.076 24 C -0.056 4.056 25 N -0.243 5.243 26 C -0.192 4.192 27 C -0.193 4.193 28 N -0.136 5.136 29 C -0.193 4.193 30 H 0.130 0.870 31 C 0.063 3.937 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.200 0.800 45 H 0.207 0.793 46 H 0.070 0.930 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -11.519 -21.890 5.923 25.435 hybrid contribution 0.769 2.351 -0.336 2.496 sum -10.750 -19.539 5.587 22.990 Atomic orbital electron populations 1.70081 1.06427 1.25700 1.57168 1.25712 0.96521 1.01197 1.02146 0.85079 0.77871 0.79064 0.77393 1.21237 1.21865 1.19354 1.19371 0.91334 0.83732 1.42543 0.90314 1.45522 1.14076 1.01119 1.73778 1.21310 0.97752 0.84392 0.94364 1.23717 0.90567 1.01917 1.01566 0.85510 1.22420 0.98804 0.91926 1.00008 0.87227 1.20757 0.83396 0.94117 0.97805 1.46220 1.19277 1.33590 1.37246 1.20745 0.87925 0.79883 0.82036 1.90740 1.61549 1.59196 1.31812 1.21965 0.95424 1.01124 0.80079 0.84060 1.21811 0.99507 0.95132 0.98862 1.21707 0.96289 1.00941 0.96274 1.20444 1.00088 0.94709 0.92344 1.24074 1.00851 0.89290 0.91420 1.70078 1.19724 1.25440 1.09100 1.22716 1.03378 0.92708 1.00393 1.22897 1.06844 1.02968 0.86570 1.45362 1.42183 1.18940 1.07148 1.24041 1.04158 0.91517 0.99611 0.86986 1.20824 0.85941 0.93789 0.93167 0.94117 0.92540 0.95554 0.91137 0.90583 0.75034 0.87308 0.91283 0.90017 0.86872 0.88674 0.87474 0.80034 0.79323 0.92999 0.97793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.88 10.87 21.65 0.24 -55.64 16 2 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 3 Si 0.98 44.98 29.56 68.60 2.03 47.01 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.37 10.35 84.03 0.87 -12.50 16 8 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 9 N -0.62 -31.34 3.38 -688.06 -2.32 -33.66 16 10 C 0.15 5.83 7.04 86.53 0.61 6.44 16 11 C -0.16 -4.97 6.85 -9.94 -0.07 -5.03 16 12 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 13 C -0.11 -2.92 5.40 -10.79 -0.06 -2.98 16 14 H 0.11 2.77 8.04 -2.39 -0.02 2.75 16 15 C 0.16 3.56 5.95 86.38 0.51 4.07 16 16 N -0.71 -13.23 4.88 -463.07 -2.26 -15.49 16 17 C 0.51 10.28 7.18 87.66 0.63 10.91 16 18 O -0.56 -15.05 15.83 -3.02 -0.05 -15.10 16 19 C 0.12 1.73 3.44 44.34 0.15 1.88 16 20 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 21 C -0.12 -1.33 4.68 30.73 0.14 -1.18 16 22 C -0.11 -0.81 5.96 30.78 0.18 -0.62 16 23 C -0.04 -0.43 6.33 30.09 0.19 -0.24 16 24 C 0.21 4.09 7.65 138.23 1.06 5.15 16 25 N -0.52 -13.06 11.24 -187.50 -2.11 -15.16 16 26 C -0.05 -1.01 11.87 83.54 0.99 -0.02 16 27 C -0.06 -1.15 10.45 83.22 0.87 -0.28 16 28 N -0.45 -8.10 2.98 -495.34 -1.47 -9.57 16 29 C -0.17 -5.98 6.74 -9.92 -0.07 -6.04 16 30 H 0.11 3.66 8.12 -2.39 -0.02 3.64 16 31 C 0.19 8.85 5.70 86.55 0.49 9.34 16 32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.07 1.65 7.94 -2.39 -0.02 1.63 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 6.25 6.02 -92.71 -0.56 5.69 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.09 7.75 -2.39 -0.02 1.07 16 40 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 41 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.19 2.82 5.82 -2.91 -0.02 2.80 16 46 H 0.05 2.81 6.52 -2.39 -0.02 2.79 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -74.25 375.01 1.44 -72.81 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.42 Total: 18.94 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.97 Total: 5.88 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -7.93 Total: -129.53 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.25 1.44 -72.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978274660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.584 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds