Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00245 * 2 1 4 4 H 1.48494 * 109.47153 * 239.99669 * 3 2 1 5 5 H 1.48503 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47483 * 119.99717 * 3 2 1 7 7 C 1.38816 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99818 * 189.09828 * 7 2 1 9 9 N 1.36938 * 120.00001 * 9.10476 * 7 2 1 10 10 C 1.48147 * 127.83597 * 15.57203 * 9 7 2 11 11 C 1.54390 * 104.61773 * 140.41133 * 10 9 7 12 12 H 1.08988 * 117.61998 * 242.76255 * 11 10 9 13 13 C 1.53006 * 118.11995 * 87.18873 * 11 10 9 14 14 H 1.09004 * 117.44393 * 16.06505 * 13 11 10 15 15 C 1.53001 * 117.44385 * 160.80882 * 13 11 10 16 16 N 1.46495 * 109.47388 * 184.99756 * 15 13 11 17 17 C 1.34774 * 120.00138 * 180.02562 * 16 15 13 18 18 O 1.21274 * 119.99904 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00088 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.50937 * 59.90259 * 19 17 16 21 21 C 1.53151 * 109.51158 * 179.97438 * 19 17 16 22 22 C 1.53263 * 109.49484 * 189.41590 * 21 19 17 23 23 N 1.46483 * 108.79450 * 309.62041 * 22 21 19 24 24 C 1.36314 * 127.77546 * 197.16106 * 23 22 21 25 25 C 1.34852 * 106.68380 * 179.91468 * 24 23 22 26 26 N 1.34290 * 108.07638 * 0.02562 * 25 24 23 27 27 C 1.30092 * 109.20909 * 0.02721 * 26 25 24 28 28 C 1.51047 * 127.38774 * 179.90283 * 27 26 25 29 29 C 1.53004 * 60.55687 * 268.46208 * 13 11 10 30 30 H 1.09004 * 119.53665 * 248.24108 * 29 13 11 31 31 C 1.48143 * 127.83753 * 195.56873 * 9 7 2 32 32 H 0.97003 * 119.99835 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.40815 * 21.62900 * 10 9 7 34 34 H 1.08997 * 110.50442 * 259.24715 * 10 9 7 35 35 H 1.08998 * 109.46876 * 305.00363 * 15 13 11 36 36 H 1.09005 * 109.46727 * 64.99552 * 15 13 11 37 37 H 0.97003 * 119.99726 * 0.02562 * 16 15 13 38 38 H 1.09001 * 109.46595 * 309.42033 * 21 19 17 39 39 H 1.09000 * 109.46408 * 69.40407 * 21 19 17 40 40 H 1.08998 * 109.58575 * 69.41291 * 22 21 19 41 41 H 1.09000 * 109.58145 * 189.69053 * 22 21 19 42 42 H 1.07994 * 126.65443 * 359.90669 * 24 23 22 43 43 H 1.07997 * 125.96026 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.71513 * 76.30323 * 28 27 26 45 45 H 1.08995 * 109.71543 * 315.66514 * 28 27 26 46 46 H 1.09001 * 110.40922 * 338.37113 * 31 9 7 47 47 H 1.08997 * 110.40388 * 100.80227 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3384 -2.3807 -0.1866 10 6 -0.0342 -2.5710 -0.7104 11 6 0.0637 -3.8172 -1.6165 12 1 -0.1484 -3.6882 -2.6777 13 6 -0.1185 -5.1931 -0.9726 14 1 -0.5677 -5.2278 0.0200 15 6 -0.4676 -6.3627 -1.8951 16 7 -0.7179 -7.5613 -1.0908 17 6 -1.0444 -8.7215 -1.6939 18 8 -1.1307 -8.7733 -2.9024 19 6 -1.3024 -9.9543 -0.8665 20 1 -2.1323 -9.7681 -0.1848 21 6 -1.6518 -11.1257 -1.7891 22 6 -2.1410 -12.3104 -0.9488 23 7 -1.1747 -12.5593 0.1236 24 6 -1.0433 -13.6822 0.8852 25 6 -0.0231 -13.4548 1.7372 26 7 0.4528 -12.2221 1.4981 27 6 -0.2314 -11.6787 0.5343 28 6 -0.0448 -10.3028 -0.0605 29 6 1.2860 -4.5976 -1.0895 30 1 2.0095 -5.0557 -1.7639 31 6 1.8195 -3.7546 0.0887 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3432 -1.7020 -1.2913 34 1 -0.7333 -2.7491 0.1067 35 1 -1.3607 -6.1179 -2.4700 36 1 0.3630 -6.5488 -2.5760 37 1 -0.6485 -7.5199 -0.1242 38 1 -2.4378 -10.8216 -2.4804 39 1 -0.7667 -11.4208 -2.3526 40 1 -3.1136 -12.0749 -0.5167 41 1 -2.2260 -13.1953 -1.5795 42 1 -1.6405 -14.5795 0.8191 43 1 0.3462 -14.1437 2.4825 44 1 0.8247 -10.3011 -0.7177 45 1 0.0951 -9.5733 0.7372 46 1 2.9090 -3.7786 0.1106 47 1 1.4114 -4.1182 1.0317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978402464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = 80.147764 kcal Electronic energy + Delta-G solvation = -27282.822453 eV Core-core repulsion = 23468.018901 eV Total energy + Delta-G solvation = -3814.803553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.65753 -40.19031 -38.82896 -36.61535 -35.09143 -33.81614 -33.24945 -30.89268 -30.20449 -29.23378 -27.34784 -27.12460 -25.29745 -24.71520 -23.05642 -21.75984 -21.18262 -20.72150 -19.77839 -19.39715 -19.28567 -17.46896 -17.37516 -16.81712 -16.33234 -16.02487 -15.69323 -14.91469 -14.63037 -14.56013 -14.48546 -14.19171 -14.14200 -13.93170 -13.62207 -13.23483 -13.03420 -12.77090 -12.66358 -12.37140 -12.25755 -11.87881 -11.71247 -11.61250 -11.26710 -11.13071 -10.82859 -10.68250 -10.33929 -10.25966 -10.17675 -10.10698 -9.91739 -9.75121 -9.46824 -9.16819 -9.01558 -8.66771 -8.65151 -6.88445 -5.81299 -3.15561 1.71497 2.35242 2.39354 2.85200 2.89820 3.38058 3.42705 3.43810 3.80505 4.02253 4.07740 4.11844 4.17705 4.45362 4.57803 4.61425 4.66369 4.71145 4.83871 4.94290 5.12133 5.19571 5.22655 5.26364 5.36192 5.37101 5.42403 5.46997 5.50324 5.59976 5.75393 5.84190 5.87672 5.94078 5.96016 6.21158 6.25881 6.45602 6.53135 6.63644 6.68453 6.81125 6.89682 7.30405 7.33878 7.51170 7.69955 7.80880 7.98825 8.19492 9.09579 9.72397 10.49251 11.32982 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.001949 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.472072 B =14361.742781 C =15080.212793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.162 4.162 12 H 0.103 0.897 13 C -0.152 4.152 14 H 0.103 0.897 15 C 0.154 3.846 16 N -0.719 5.719 17 C 0.520 3.480 18 O -0.539 6.539 19 C -0.113 4.113 20 H 0.106 0.894 21 C -0.116 4.116 22 C 0.103 3.897 23 N -0.457 5.457 24 C -0.056 4.056 25 C -0.031 4.031 26 N -0.486 5.486 27 C 0.209 3.791 28 C -0.024 4.024 29 C -0.168 4.168 30 H 0.103 0.897 31 C 0.153 3.847 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.050 0.950 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -26.840 -1.419 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.057 3.943 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.171 4.171 14 H 0.121 0.879 15 C 0.031 3.969 16 N -0.370 5.370 17 C 0.305 3.695 18 O -0.416 6.416 19 C -0.135 4.135 20 H 0.124 0.876 21 C -0.154 4.154 22 C -0.019 4.019 23 N -0.140 5.140 24 C -0.189 4.189 25 C -0.179 4.179 26 N -0.204 5.204 27 C -0.053 4.053 28 C -0.064 4.064 29 C -0.188 4.188 30 H 0.121 0.879 31 C 0.027 3.973 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.192 0.808 43 H 0.187 0.813 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.044 -26.170 -1.963 26.931 hybrid contribution -0.307 0.267 0.103 0.420 sum -6.351 -25.903 -1.860 26.735 Atomic orbital electron populations 1.69886 1.05061 1.25549 1.55748 1.24901 0.95659 0.97998 1.01753 0.86184 0.78548 0.82903 0.78032 1.21070 1.21545 1.20967 1.18955 0.90795 0.82373 1.43442 0.90614 1.45194 1.13321 1.00006 1.73254 1.21075 0.86850 0.92756 0.93590 1.24197 1.02173 0.91677 1.00203 0.87851 1.22535 1.00485 0.93864 1.00259 0.87926 1.20904 1.01150 0.82135 0.92720 1.46066 1.70166 1.09721 1.11080 1.20205 0.76777 0.84142 0.88360 1.90722 1.51496 1.85171 1.14241 1.21444 0.99925 0.94025 0.98071 0.87634 1.21729 1.04281 0.92064 0.97288 1.22055 0.91643 1.00206 0.88011 1.45455 1.27124 1.13309 1.28150 1.22582 1.04811 0.92835 0.98658 1.22395 0.97730 0.94983 1.02785 1.70078 1.26952 1.08590 1.14812 1.23104 0.90738 0.94834 0.96628 1.20127 0.97505 0.89471 0.99247 1.23991 0.89754 1.02431 1.02589 0.87908 1.21146 0.97200 0.85992 0.92947 0.93504 0.89206 0.95917 0.91048 0.91284 0.76187 0.87963 0.89830 0.89449 0.88690 0.80828 0.81266 0.88554 0.87853 0.93141 0.95793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.86 55.49 0.60 -25.99 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 9 N -0.59 -15.03 3.38 -168.86 -0.57 -15.60 16 10 C 0.18 4.29 5.70 -2.41 -0.01 4.28 16 11 C -0.16 -2.95 6.85 -89.21 -0.61 -3.56 16 12 H 0.10 1.78 8.14 -51.94 -0.42 1.36 16 13 C -0.15 -2.19 5.39 -90.61 -0.49 -2.68 16 14 H 0.10 1.46 8.04 -51.93 -0.42 1.05 16 15 C 0.15 1.89 5.95 -4.04 -0.02 1.87 16 16 N -0.72 -7.11 5.46 -60.30 -0.33 -7.44 16 17 C 0.52 5.31 7.13 -10.99 -0.08 5.23 16 18 O -0.54 -7.49 15.83 5.56 0.09 -7.40 16 19 C -0.11 -0.80 2.55 -91.50 -0.23 -1.04 16 20 H 0.11 0.61 8.12 -51.93 -0.42 0.19 16 21 C -0.12 -0.73 4.67 -26.52 -0.12 -0.86 16 22 C 0.10 0.51 6.98 -3.91 -0.03 0.49 16 23 N -0.46 -3.63 3.13 -113.75 -0.36 -3.99 16 24 C -0.06 -0.42 11.65 -16.76 -0.20 -0.62 16 25 C -0.03 -0.29 11.87 -17.68 -0.21 -0.50 16 26 N -0.49 -5.85 11.24 -10.62 -0.12 -5.97 16 27 C 0.21 2.08 7.65 -155.24 -1.19 0.90 16 28 C -0.02 -0.19 5.47 -27.52 -0.15 -0.34 16 29 C -0.17 -2.84 6.74 -89.22 -0.60 -3.44 16 30 H 0.10 1.62 8.12 -51.93 -0.42 1.19 16 31 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.09 2.37 6.51 -51.93 -0.34 2.04 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 37 H 0.40 3.17 8.13 -40.82 -0.33 2.84 16 38 H 0.10 0.64 7.79 -51.93 -0.40 0.24 16 39 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 45 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -34.42 380.28 -11.55 -45.97 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.35 Total: 1.78 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.21 Total: -3.87 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.77 Total: -58.99 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.42 -11.55 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978402464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.113 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds