Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48493 * 109.47002 * 240.00053 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47156 * 119.99548 * 3 2 1 7 7 C 1.38807 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00074 * 180.02562 * 9 7 2 11 11 H 1.08995 * 108.04456 * 37.89016 * 10 9 7 12 12 C 1.50412 * 107.73029 * 281.22283 * 10 9 7 13 13 C 1.52658 * 110.71141 * 191.37439 * 12 10 9 14 14 C 1.52860 * 108.65203 * 59.69864 * 13 12 10 15 15 C 1.52902 * 109.62630 * 295.04766 * 14 13 12 16 16 H 1.08994 * 111.42745 * 290.29551 * 15 14 13 17 17 C 1.55274 * 107.60503 * 166.76221 * 15 14 13 18 18 N 1.47073 * 105.74958 * 274.51825 * 17 15 14 19 19 C 1.34773 * 125.43832 * 160.29068 * 18 17 15 20 20 O 1.21278 * 120.00308 * 179.69514 * 19 18 17 21 21 C 1.50703 * 120.00236 * 359.69235 * 19 18 17 22 22 C 1.50699 * 109.47409 * 179.97438 * 21 19 18 23 23 C 1.38602 * 120.79596 * 90.00241 * 22 21 19 24 24 N 1.32331 * 119.10423 * 179.97438 * 23 22 21 25 25 C 1.31794 * 120.81888 * 359.97438 * 24 23 22 26 26 N 1.31795 * 121.75372 * 0.02562 * 25 24 23 27 27 C 1.32334 * 120.81807 * 0.02562 * 26 25 24 28 28 C 1.47128 * 109.11830 * 340.02699 * 18 17 15 29 29 C 1.49686 * 108.30302 * 154.99524 * 10 9 7 30 30 H 1.08993 * 107.66498 * 280.47423 * 29 10 9 31 31 H 0.96996 * 119.99943 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99853 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.37215 * 71.00763 * 12 10 9 34 34 H 1.09002 * 109.19662 * 311.62359 * 12 10 9 35 35 H 1.08999 * 109.60405 * 299.94712 * 13 12 10 36 36 H 1.09002 * 109.60285 * 179.44697 * 13 12 10 37 37 H 1.08996 * 109.44284 * 175.00234 * 14 13 12 38 38 H 1.09000 * 109.42245 * 55.08313 * 14 13 12 39 39 H 1.09002 * 110.32265 * 155.40185 * 17 15 14 40 40 H 1.09004 * 110.11829 * 33.52924 * 17 15 14 41 41 H 1.08998 * 109.46914 * 60.00087 * 21 19 18 42 42 H 1.08997 * 109.47493 * 300.00515 * 21 19 18 43 43 H 1.08004 * 120.44683 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.12654 * 179.71869 * 25 24 23 45 45 H 1.07998 * 120.44701 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.98114 * 119.11539 * 28 18 17 47 47 H 1.08997 * 109.97770 * 240.40645 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9348 -3.5399 0.6388 12 6 2.5298 -3.9146 -1.4031 13 6 3.0545 -5.3414 -1.5431 14 6 1.9266 -6.3132 -1.1966 15 6 1.5467 -6.1551 0.2759 16 1 2.3346 -6.5244 0.9323 17 6 0.2003 -6.8967 0.4959 18 7 -0.8501 -5.9321 0.1363 19 6 -2.1221 -6.2443 -0.1815 20 8 -2.9111 -5.3658 -0.4580 21 6 -2.5640 -7.6850 -0.1931 22 6 -4.0194 -7.7610 -0.5768 23 6 -4.3978 -7.8816 -1.9047 24 7 -5.6853 -7.9460 -2.2038 25 6 -6.6015 -7.8973 -1.2577 26 7 -6.2789 -7.7829 0.0150 27 6 -5.0116 -7.7119 0.3895 28 6 -0.2921 -4.5716 0.1849 29 6 1.1775 -4.7076 0.6022 30 1 1.2198 -4.5951 1.6855 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 3.3268 -3.2138 -1.6513 34 1 1.6982 -3.7694 -2.0927 35 1 3.8903 -5.4924 -0.8600 36 1 3.3818 -5.5116 -2.5688 37 1 2.2598 -7.3351 -1.3777 38 1 1.0589 -6.0986 -1.8204 39 1 0.0974 -7.1928 1.5398 40 1 0.1444 -7.7721 -0.1512 41 1 -2.4274 -8.1150 0.7991 42 1 -1.9678 -8.2421 -0.9157 43 1 -3.6519 -7.9233 -2.6847 44 1 -7.6446 -7.9475 -1.5330 45 1 -4.7540 -7.6187 1.4341 46 1 -0.3585 -4.1064 -0.7986 47 1 -0.8334 -3.9731 0.9176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992710442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = 24.187905 kcal Electronic energy + Delta-G solvation = -28551.449212 eV Core-core repulsion = 24734.219058 eV Total energy + Delta-G solvation = -3817.230154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29462 -40.52729 -38.66328 -35.63076 -34.01811 -33.92416 -33.86382 -31.68842 -30.95647 -29.11434 -28.27639 -26.76449 -24.79531 -24.73849 -23.64317 -22.99711 -21.64322 -20.90735 -19.36555 -18.40587 -17.82941 -17.82175 -17.42234 -16.81582 -16.08275 -15.62122 -15.15615 -14.85354 -14.65285 -14.40379 -14.08147 -13.85815 -13.82372 -13.73526 -13.61561 -13.30001 -13.00252 -12.77421 -12.49562 -12.31876 -12.01176 -11.84023 -11.39102 -11.16557 -11.05851 -10.98724 -10.98226 -10.87089 -10.81010 -10.30542 -10.19311 -10.06177 -9.90791 -9.68147 -9.55616 -9.49585 -9.41670 -8.86829 -8.53223 -6.96701 -5.75296 -3.05439 0.66262 0.90745 2.61574 2.97577 3.43740 3.48163 3.49853 3.61827 3.95171 4.03077 4.30484 4.40000 4.42334 4.44240 4.50281 4.59140 4.77256 4.86939 5.05456 5.19640 5.20970 5.26381 5.30244 5.37052 5.40807 5.54779 5.60762 5.64054 5.70427 5.71895 5.78100 5.92025 6.02778 6.09675 6.17296 6.21149 6.30959 6.36642 6.40413 6.44955 6.58740 6.71558 6.74436 6.91065 7.15440 7.55339 7.69488 7.87606 8.17490 8.42343 9.53327 10.09356 10.43273 11.46851 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.003046 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.523018 B = 9189.852048 C =10595.702642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.189 3.811 11 H 0.042 0.958 12 C -0.129 4.129 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.089 4.089 16 H 0.094 0.906 17 C 0.100 3.900 18 N -0.613 5.613 19 C 0.523 3.477 20 O -0.529 6.529 21 C -0.089 4.089 22 C -0.169 4.169 23 C 0.163 3.837 24 N -0.519 5.519 25 C 0.289 3.711 26 N -0.519 5.519 27 C 0.162 3.838 28 C 0.119 3.881 29 C -0.087 4.087 30 H 0.071 0.929 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.195 0.805 45 H 0.165 0.835 46 H 0.077 0.923 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -22.910 0.194 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.080 3.920 11 H 0.060 0.940 12 C -0.169 4.169 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.113 0.887 17 C -0.023 4.023 18 N -0.347 5.347 19 C 0.310 3.690 20 O -0.405 6.405 21 C -0.130 4.130 22 C -0.173 4.173 23 C -0.003 4.003 24 N -0.232 5.232 25 C 0.001 3.999 26 N -0.232 5.232 27 C -0.004 4.004 28 C -0.003 4.003 29 C -0.107 4.107 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.183 0.817 44 H 0.212 0.788 45 H 0.183 0.817 46 H 0.095 0.905 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.909 -22.317 -0.206 22.507 hybrid contribution 1.135 1.168 0.262 1.650 sum -1.773 -21.150 0.056 21.224 Atomic orbital electron populations 1.69652 1.05066 1.25833 1.57318 1.24743 0.95465 0.97646 1.02945 0.86302 0.78526 0.83764 0.77769 1.21317 1.21729 1.21330 1.19158 0.90900 0.84125 1.43081 0.91273 1.42712 1.05862 0.99673 1.89164 1.18879 0.93595 0.85746 0.93798 0.93975 1.21689 1.00913 0.94320 0.99947 1.21453 0.97465 0.96192 1.00490 1.21526 0.99279 0.98830 0.95102 1.22007 0.95643 0.95228 0.97931 0.88730 1.22454 0.87433 0.92333 1.00097 1.48457 1.09233 1.09113 1.67910 1.20006 0.80750 0.90572 0.77636 1.90794 1.51779 1.49948 1.48020 1.20506 0.92228 0.95326 1.04944 1.21097 0.96816 1.03159 0.96252 1.23084 0.93139 0.89496 0.94621 1.68426 1.02074 1.14080 1.38630 1.24969 1.00067 0.90832 0.84029 1.68427 1.20554 1.13662 1.20583 1.23077 0.87520 0.89438 1.00328 1.21850 0.93126 0.82286 1.03051 1.21087 0.94056 0.94133 1.01419 0.91090 0.93402 0.77974 0.92078 0.92424 0.92323 0.92676 0.92400 0.91889 0.91483 0.90770 0.87450 0.87437 0.81736 0.78817 0.81742 0.90491 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.55 9.76 -15.06 -0.15 -6.70 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.62 4.88 -56.31 -0.27 -17.90 16 10 C 0.19 3.47 2.47 -70.86 -0.17 3.29 16 11 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 12 C -0.13 -2.17 5.21 -28.20 -0.15 -2.31 16 13 C -0.12 -1.45 5.94 -26.98 -0.16 -1.61 16 14 C -0.11 -1.17 4.90 -26.85 -0.13 -1.30 16 15 C -0.09 -0.93 3.39 -89.52 -0.30 -1.23 16 16 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 17 C 0.10 0.89 5.96 -2.52 -0.02 0.88 16 18 N -0.61 -7.92 3.30 -171.07 -0.57 -8.48 16 19 C 0.52 7.06 7.84 -10.99 -0.09 6.98 16 20 O -0.53 -9.97 16.35 5.56 0.09 -9.88 16 21 C -0.09 -0.74 4.91 -29.03 -0.14 -0.88 16 22 C -0.17 -1.74 4.41 -104.36 -0.46 -2.20 16 23 C 0.16 1.76 11.01 -17.20 -0.19 1.58 16 24 N -0.52 -6.23 10.44 -14.58 -0.15 -6.38 16 25 C 0.29 3.20 12.29 -92.15 -1.13 2.07 16 26 N -0.52 -6.21 10.44 -14.58 -0.15 -6.36 16 27 C 0.16 1.75 11.01 -17.21 -0.19 1.57 16 28 C 0.12 1.98 4.83 -3.51 -0.02 1.96 16 29 C -0.09 -1.29 2.37 -92.12 -0.22 -1.51 16 30 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.38 9.98 5.70 -40.82 -0.23 9.75 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.48 7.34 -51.93 -0.38 0.10 16 41 H 0.11 0.61 8.10 -51.93 -0.42 0.18 16 42 H 0.11 0.61 7.84 -51.93 -0.41 0.20 16 43 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.08 1.52 7.41 -51.93 -0.38 1.13 16 47 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -35.11 376.97 -10.55 -45.66 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.27 Total: 7.76 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -3.61 Total: 0.14 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.42 Total: -66.71 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.11 -10.55 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992710442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.845 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds