Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48493 * 109.47002 * 240.00053 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47156 * 119.99548 * 3 2 1 7 7 C 1.38807 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00074 * 180.02562 * 9 7 2 11 11 H 1.08995 * 108.04456 * 37.89016 * 10 9 7 12 12 C 1.50412 * 107.73029 * 281.22283 * 10 9 7 13 13 C 1.52658 * 110.71141 * 191.37439 * 12 10 9 14 14 C 1.52860 * 108.65203 * 59.69864 * 13 12 10 15 15 C 1.52902 * 109.62630 * 295.04766 * 14 13 12 16 16 H 1.08994 * 111.42745 * 290.29551 * 15 14 13 17 17 C 1.55274 * 107.60503 * 166.76221 * 15 14 13 18 18 N 1.47073 * 105.74958 * 274.51825 * 17 15 14 19 19 C 1.34773 * 125.43832 * 160.29068 * 18 17 15 20 20 O 1.21278 * 120.00308 * 179.69514 * 19 18 17 21 21 C 1.50703 * 120.00236 * 359.69235 * 19 18 17 22 22 C 1.50699 * 109.47409 * 179.97438 * 21 19 18 23 23 C 1.38602 * 120.79596 * 90.00241 * 22 21 19 24 24 N 1.32331 * 119.10423 * 179.97438 * 23 22 21 25 25 C 1.31794 * 120.81888 * 359.97438 * 24 23 22 26 26 N 1.31795 * 121.75372 * 0.02562 * 25 24 23 27 27 C 1.32334 * 120.81807 * 0.02562 * 26 25 24 28 28 C 1.47128 * 109.11830 * 340.02699 * 18 17 15 29 29 C 1.49686 * 108.30302 * 154.99524 * 10 9 7 30 30 H 1.08993 * 107.66498 * 280.47423 * 29 10 9 31 31 H 0.96996 * 119.99943 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99853 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.37215 * 71.00763 * 12 10 9 34 34 H 1.09002 * 109.19662 * 311.62359 * 12 10 9 35 35 H 1.08999 * 109.60405 * 299.94712 * 13 12 10 36 36 H 1.09002 * 109.60285 * 179.44697 * 13 12 10 37 37 H 1.08996 * 109.44284 * 175.00234 * 14 13 12 38 38 H 1.09000 * 109.42245 * 55.08313 * 14 13 12 39 39 H 1.09002 * 110.32265 * 155.40185 * 17 15 14 40 40 H 1.09004 * 110.11829 * 33.52924 * 17 15 14 41 41 H 1.08998 * 109.46914 * 60.00087 * 21 19 18 42 42 H 1.08997 * 109.47493 * 300.00515 * 21 19 18 43 43 H 1.08004 * 120.44683 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.12654 * 179.71869 * 25 24 23 45 45 H 1.07998 * 120.44701 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.98114 * 119.11539 * 28 18 17 47 47 H 1.08997 * 109.97770 * 240.40645 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9348 -3.5399 0.6388 12 6 2.5298 -3.9146 -1.4031 13 6 3.0545 -5.3414 -1.5431 14 6 1.9266 -6.3132 -1.1966 15 6 1.5467 -6.1551 0.2759 16 1 2.3346 -6.5244 0.9323 17 6 0.2003 -6.8967 0.4959 18 7 -0.8501 -5.9321 0.1363 19 6 -2.1221 -6.2443 -0.1815 20 8 -2.9111 -5.3658 -0.4580 21 6 -2.5640 -7.6850 -0.1931 22 6 -4.0194 -7.7610 -0.5768 23 6 -4.3978 -7.8816 -1.9047 24 7 -5.6853 -7.9460 -2.2038 25 6 -6.6015 -7.8973 -1.2577 26 7 -6.2789 -7.7829 0.0150 27 6 -5.0116 -7.7119 0.3895 28 6 -0.2921 -4.5716 0.1849 29 6 1.1775 -4.7076 0.6022 30 1 1.2198 -4.5951 1.6855 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 3.3268 -3.2138 -1.6513 34 1 1.6982 -3.7694 -2.0927 35 1 3.8903 -5.4924 -0.8600 36 1 3.3818 -5.5116 -2.5688 37 1 2.2598 -7.3351 -1.3777 38 1 1.0589 -6.0986 -1.8204 39 1 0.0974 -7.1928 1.5398 40 1 0.1444 -7.7721 -0.1512 41 1 -2.4274 -8.1150 0.7991 42 1 -1.9678 -8.2421 -0.9157 43 1 -3.6519 -7.9233 -2.6847 44 1 -7.6446 -7.9475 -1.5330 45 1 -4.7540 -7.6187 1.4341 46 1 -0.3585 -4.1064 -0.7986 47 1 -0.8334 -3.9731 0.9176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992710442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = 0.465214 kcal Electronic energy + Delta-G solvation = -28552.477905 eV Core-core repulsion = 24734.219058 eV Total energy + Delta-G solvation = -3818.258847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -42.13239 -41.58468 -39.81973 -37.02059 -35.47395 -34.77742 -34.67972 -33.43225 -32.07836 -30.52051 -29.33022 -27.93003 -26.01702 -25.59217 -25.34055 -23.91262 -22.77154 -22.09627 -20.43138 -19.69229 -19.07049 -18.63062 -18.57417 -18.03202 -17.25091 -16.76056 -16.63068 -16.14795 -15.67525 -15.49267 -15.37498 -15.00527 -14.88601 -14.73293 -14.58741 -14.51629 -14.22376 -14.00546 -13.57546 -13.45666 -13.12622 -13.04862 -12.82165 -12.73495 -12.46504 -12.30018 -12.13269 -12.03929 -11.91027 -11.86766 -11.83255 -11.26244 -11.19559 -11.09642 -10.95974 -10.71692 -10.36100 -10.23768 -9.63025 -9.00868 -7.94871 -5.23821 -0.13192 0.10545 1.43271 1.46623 1.52817 1.61421 1.99038 2.54137 2.80139 3.23586 3.28144 3.37995 3.43794 3.52395 3.60204 3.66489 3.77412 3.85923 3.86892 4.17109 4.23959 4.31179 4.33347 4.43490 4.45327 4.53213 4.56255 4.63257 4.70192 4.72631 4.85929 4.86059 4.90063 4.97649 5.00793 5.10945 5.22082 5.25879 5.33391 5.39056 5.41973 5.46596 5.53052 5.62393 5.76087 5.94884 6.27026 6.57822 7.07097 7.15879 7.32157 8.10451 8.30694 9.28489 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.003046 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.523018 B = 9189.852048 C =10595.702642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.187 3.813 11 H 0.041 0.959 12 C -0.122 4.122 13 C -0.110 4.110 14 C -0.106 4.106 15 C -0.080 4.080 16 H 0.130 0.870 17 C 0.097 3.903 18 N -0.610 5.610 19 C 0.516 3.484 20 O -0.597 6.597 21 C -0.072 4.072 22 C -0.173 4.173 23 C 0.149 3.851 24 N -0.541 5.541 25 C 0.278 3.722 26 N -0.541 5.541 27 C 0.149 3.851 28 C 0.130 3.870 29 C -0.082 4.082 30 H 0.069 0.931 31 H 0.248 0.752 32 H 0.371 0.629 33 H 0.038 0.962 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.185 0.815 44 H 0.218 0.782 45 H 0.185 0.815 46 H 0.033 0.967 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -26.924 0.823 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.389 5.389 10 C 0.079 3.921 11 H 0.059 0.941 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.144 4.144 15 C -0.099 4.099 16 H 0.148 0.852 17 C -0.023 4.023 18 N -0.343 5.343 19 C 0.307 3.693 20 O -0.478 6.478 21 C -0.112 4.112 22 C -0.177 4.177 23 C -0.017 4.017 24 N -0.254 5.254 25 C -0.010 4.010 26 N -0.254 5.254 27 C -0.017 4.017 28 C 0.006 3.994 29 C -0.102 4.102 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.204 0.796 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.202 0.798 44 H 0.234 0.766 45 H 0.202 0.798 46 H 0.051 0.949 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.326 -26.415 0.432 26.420 hybrid contribution 0.396 2.415 0.046 2.447 sum 0.070 -24.000 0.479 24.005 Atomic orbital electron populations 1.69848 1.06807 1.25884 1.60030 1.25578 0.96241 1.01221 1.04258 0.85235 0.77126 0.79317 0.78264 1.20437 1.22664 1.20083 1.19604 0.91419 0.85327 1.40289 0.90445 1.43031 1.05535 1.01262 1.89045 1.19168 0.93591 0.84571 0.94773 0.94128 1.21520 0.99073 0.97774 0.97838 1.21411 0.98681 0.92781 1.01916 1.21549 0.97677 1.00528 0.94619 1.22122 0.97791 0.91310 0.98635 0.85188 1.22836 0.84542 0.92049 1.02920 1.48540 1.10221 1.08131 1.67360 1.21059 0.80032 0.92343 0.75894 1.90773 1.53652 1.52432 1.50967 1.20583 0.90981 0.91329 1.08329 1.21309 0.97979 1.02557 0.95842 1.23550 0.93291 0.89104 0.95706 1.68456 1.02863 1.14965 1.39145 1.25469 1.01137 0.90453 0.83898 1.68459 1.21440 1.14510 1.21011 1.23550 0.87492 0.88979 1.01640 1.21380 0.94460 0.84322 0.99200 1.20961 0.91921 0.96628 1.00691 0.91274 0.94336 0.79624 0.94282 0.95524 0.90356 0.91533 0.87928 0.93971 0.88589 0.86387 0.83559 0.83519 0.79814 0.76620 0.79784 0.94896 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.64 13.06 21.65 0.28 -62.35 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.97 47.44 29.55 68.60 2.03 49.46 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.23 -13.17 9.76 84.03 0.82 -12.35 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -38.04 4.88 -332.06 -1.62 -39.66 16 10 C 0.19 6.94 2.47 43.09 0.11 7.05 16 11 H 0.04 1.53 8.06 -2.39 -0.02 1.51 16 12 C -0.12 -4.16 5.21 29.64 0.15 -4.01 16 13 C -0.11 -2.38 5.94 30.43 0.18 -2.20 16 14 C -0.11 -1.78 4.90 30.51 0.15 -1.63 16 15 C -0.08 -1.30 3.39 -10.08 -0.03 -1.34 16 16 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 17 C 0.10 1.21 5.96 87.05 0.52 1.73 16 18 N -0.61 -14.80 3.30 -813.54 -2.69 -17.49 16 19 C 0.52 13.33 7.84 87.66 0.69 14.02 16 20 O -0.60 -23.46 16.35 -3.02 -0.05 -23.51 16 21 C -0.07 -0.91 4.91 29.10 0.14 -0.76 16 22 C -0.17 -3.23 4.41 -19.69 -0.09 -3.32 16 23 C 0.15 3.06 11.01 84.70 0.93 3.99 16 24 N -0.54 -12.79 10.44 -200.04 -2.09 -14.88 16 25 C 0.28 6.13 12.29 180.88 2.22 8.35 16 26 N -0.54 -12.76 10.44 -200.05 -2.09 -14.85 16 27 C 0.15 3.05 11.01 84.70 0.93 3.98 16 28 C 0.13 4.57 4.83 86.38 0.42 4.98 16 29 C -0.08 -2.39 2.37 -11.76 -0.03 -2.42 16 30 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 31 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.37 20.83 5.70 -92.71 -0.53 20.30 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.90 7.93 -2.39 -0.02 0.89 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.12 0.57 7.34 -2.39 -0.02 0.55 16 41 H 0.15 0.78 8.10 -2.39 -0.02 0.76 16 42 H 0.15 0.77 7.84 -2.39 -0.02 0.75 16 43 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 46 H 0.03 1.42 7.41 -2.38 -0.02 1.41 16 47 H 0.03 1.32 8.02 -2.39 -0.02 1.30 16 Total: -1.00 -86.51 376.97 1.80 -84.71 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.44 Total: 26.83 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.58 Total: 11.74 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -8.20 Total: -149.23 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -86.51 1.80 -84.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992710442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.173 kcal (2) G-P(sol) polarization free energy of solvation -86.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds