Wall clock time and date at job start Tue Mar 31 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99591 * 2 1 4 4 H 1.48506 * 109.47104 * 269.99914 * 3 2 1 5 5 H 1.48497 * 109.47335 * 30.00062 * 3 2 1 6 6 H 1.48495 * 109.47225 * 150.00629 * 3 2 1 7 7 C 1.38804 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00028 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99984 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00171 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.89219 * 34.60865 * 10 9 7 12 12 C 1.53709 * 109.90077 * 273.54314 * 10 9 7 13 13 C 1.54063 * 106.68246 * 241.82161 * 12 10 9 14 14 C 1.54492 * 104.83935 * 336.66463 * 13 12 10 15 15 H 1.08999 * 113.37705 * 271.77957 * 14 13 12 16 16 C 1.54113 * 108.73004 * 144.68267 * 14 13 12 17 17 N 1.47067 * 107.53014 * 272.43748 * 16 14 13 18 18 C 1.34782 * 125.70901 * 182.01165 * 17 16 14 19 19 O 1.21279 * 120.00301 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99880 * 0.02562 * 18 17 16 21 21 C 1.53002 * 109.47009 * 180.02562 * 20 18 17 22 22 C 1.50696 * 109.47007 * 180.02562 * 21 20 18 23 23 C 1.38593 * 120.80356 * 89.99581 * 22 21 20 24 24 N 1.32339 * 119.10632 * 180.02562 * 23 22 21 25 25 C 1.31796 * 120.81620 * 0.02562 * 24 23 22 26 26 N 1.31793 * 121.75561 * 0.27872 * 25 24 23 27 27 C 1.32339 * 120.81504 * 359.44185 * 26 25 24 28 28 C 1.47392 * 108.58151 * 2.27179 * 17 16 14 29 29 C 1.53797 * 109.90548 * 155.86448 * 10 9 7 30 30 H 1.09001 * 113.27657 * 264.63956 * 29 10 9 31 31 H 0.96999 * 120.00346 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00390 * 359.97438 * 9 7 2 33 33 H 1.09007 * 110.01365 * 122.51566 * 12 10 9 34 34 H 1.09004 * 110.01395 * 1.13133 * 12 10 9 35 35 H 1.08998 * 110.36425 * 217.82852 * 13 12 10 36 36 H 1.09000 * 110.45771 * 95.55274 * 13 12 10 37 37 H 1.08996 * 109.83923 * 152.94023 * 16 14 13 38 38 H 1.08999 * 109.83981 * 31.92704 * 16 14 13 39 39 H 1.08991 * 109.46982 * 59.99495 * 20 18 17 40 40 H 1.09006 * 109.46707 * 299.99732 * 20 18 17 41 41 H 1.08998 * 109.46958 * 59.99802 * 21 20 18 42 42 H 1.09005 * 109.46338 * 299.99649 * 21 20 18 43 43 H 1.08001 * 120.44922 * 359.97438 * 23 22 21 44 44 H 1.08002 * 119.11833 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.44191 * 180.25703 * 27 26 25 46 46 H 1.08999 * 110.32510 * 93.69468 * 28 17 16 47 47 H 1.09005 * 110.32755 * 215.91160 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 1 3.5668 -3.2133 -0.5846 12 6 4.2970 -2.9694 1.4399 13 6 5.8149 -3.0237 1.6980 14 6 6.4506 -3.1460 0.2953 15 1 6.5535 -4.1766 -0.0446 16 6 7.7777 -2.3626 0.2833 17 7 7.4669 -0.9701 -0.0734 18 6 8.3661 0.0222 -0.2265 19 8 7.9936 1.1376 -0.5229 20 6 9.8344 -0.2544 -0.0293 21 6 10.6310 1.0313 -0.2601 22 6 12.0992 0.7546 -0.0635 23 6 12.8941 0.3529 -1.1253 24 7 14.1794 0.1185 -0.9146 25 6 14.7041 0.2622 0.2858 26 7 13.9778 0.6368 1.3199 27 6 12.6868 0.8941 1.1840 28 6 6.0071 -0.8399 -0.2294 29 6 5.5166 -2.2638 -0.5939 30 1 5.5754 -2.4999 -1.6564 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0014 33 1 3.8642 -3.9639 1.5491 34 1 3.8244 -2.2777 2.1373 35 1 6.0655 -3.8935 2.3052 36 1 6.1509 -2.1100 2.1884 37 1 8.4540 -2.7918 -0.4559 38 1 8.2369 -2.3977 1.2713 39 1 10.1591 -1.0158 -0.7384 40 1 10.0039 -0.6089 0.9875 41 1 10.3061 1.7923 0.4494 42 1 10.4614 1.3861 -1.2767 43 1 12.4702 0.2320 -2.1113 44 1 15.7562 0.0632 0.4269 45 1 12.0983 1.2046 2.0346 46 1 5.5546 -0.5081 0.7051 47 1 5.7729 -0.1419 -1.0332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026313119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:19 Heat of formation + Delta-G solvation = 6.836676 kcal Electronic energy + Delta-G solvation = -27950.203104 eV Core-core repulsion = 24132.220544 eV Total energy + Delta-G solvation = -3817.982560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.03032 -41.66612 -39.87679 -36.77246 -35.77854 -34.96940 -34.66572 -33.12939 -31.76757 -30.35727 -30.00981 -27.41697 -26.30629 -25.55112 -24.98004 -24.29265 -22.82397 -20.90712 -20.55388 -20.27210 -19.52582 -18.59502 -18.55379 -18.29935 -17.32250 -16.80039 -16.63393 -16.33783 -16.00633 -15.63675 -15.14704 -14.86945 -14.81334 -14.57097 -14.46944 -14.37584 -14.28322 -13.91339 -13.77048 -13.65509 -13.56624 -13.24677 -13.15480 -12.69596 -12.30475 -12.17161 -12.15867 -11.85412 -11.82567 -11.81979 -11.69130 -11.59294 -11.52404 -11.32203 -11.00703 -10.91944 -10.33897 -10.19417 -9.67515 -9.30494 -8.06038 -5.36794 -0.10492 0.09793 1.30378 1.32790 1.37196 1.60492 1.95850 2.41405 2.79605 3.21158 3.25660 3.28220 3.29689 3.41777 3.54424 3.66095 3.73589 3.82636 3.91841 3.97854 4.16540 4.23650 4.28223 4.30482 4.37775 4.42003 4.51762 4.59891 4.63247 4.65422 4.74381 4.76588 4.79583 4.87498 5.06396 5.08911 5.10944 5.13297 5.24217 5.26315 5.30546 5.44902 5.52741 5.57288 5.78642 5.97883 6.19739 6.55263 7.05531 7.09603 7.12959 7.84221 7.99163 9.15753 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002578 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.335671 B =10857.867225 C =11818.470440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.219 4.219 8 H 0.065 0.935 9 N -0.755 5.755 10 C 0.174 3.826 11 H 0.054 0.946 12 C -0.142 4.142 13 C -0.108 4.108 14 C -0.084 4.084 15 H 0.140 0.860 16 C 0.103 3.897 17 N -0.616 5.616 18 C 0.517 3.483 19 O -0.593 6.593 20 C -0.116 4.116 21 C -0.051 4.051 22 C -0.177 4.177 23 C 0.147 3.853 24 N -0.538 5.538 25 C 0.278 3.722 26 N -0.538 5.538 27 C 0.145 3.855 28 C 0.112 3.888 29 C -0.101 4.101 30 H 0.104 0.896 31 H 0.257 0.743 32 H 0.362 0.638 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.187 0.813 44 H 0.216 0.784 45 H 0.185 0.815 46 H 0.052 0.948 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.812 -7.308 1.382 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.351 4.351 8 H 0.083 0.917 9 N -0.400 5.400 10 C 0.066 3.934 11 H 0.072 0.928 12 C -0.182 4.182 13 C -0.146 4.146 14 C -0.103 4.103 15 H 0.157 0.843 16 C -0.018 4.018 17 N -0.349 5.349 18 C 0.308 3.692 19 O -0.474 6.474 20 C -0.155 4.155 21 C -0.090 4.090 22 C -0.181 4.181 23 C -0.019 4.019 24 N -0.251 5.251 25 C -0.009 4.009 26 N -0.252 5.252 27 C -0.020 4.020 28 C -0.012 4.012 29 C -0.121 4.121 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.197 0.803 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.204 0.796 44 H 0.232 0.768 45 H 0.202 0.798 46 H 0.070 0.930 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 31.465 -6.942 1.363 32.250 hybrid contribution -1.589 1.809 -0.090 2.409 sum 29.876 -5.133 1.273 30.340 Atomic orbital electron populations 1.69839 1.06681 1.26338 1.60310 1.25311 0.95918 1.00358 1.03500 0.85681 0.78353 0.81333 0.77944 1.20886 1.21954 1.19098 1.19084 0.82722 0.93362 1.39892 0.91742 1.43162 1.02543 1.04117 1.90160 1.20987 0.90668 0.86966 0.94813 0.92772 1.22727 0.97242 1.00590 0.97623 1.22308 0.93515 1.02113 0.96647 1.23133 0.92315 1.00196 0.94649 0.84260 1.22346 0.97807 0.79057 1.02594 1.48726 1.06157 1.11428 1.68587 1.21146 0.89356 0.82895 0.75817 1.90724 1.82120 1.24241 1.50348 1.21632 0.87456 1.00040 1.06365 1.20113 0.87497 0.97035 1.04391 1.21595 0.98350 1.02296 0.95888 1.23595 0.88568 0.89430 1.00293 1.68517 1.14220 1.16676 1.25692 1.25469 1.01778 0.90500 0.83159 1.68512 1.07861 1.13533 1.35262 1.23578 0.90638 0.90537 0.97285 1.22062 0.80977 0.98340 0.99789 1.23280 0.94540 0.93503 1.00784 0.87739 0.93430 0.80282 0.91427 0.94250 0.88915 0.92933 0.88124 0.88927 0.86139 0.86522 0.90264 0.90000 0.79608 0.76754 0.79841 0.93007 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.49 13.97 21.65 0.30 -63.19 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.94 48.04 27.73 68.60 1.90 49.94 16 4 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 6 H -0.27 -12.87 6.52 99.48 0.65 -12.22 16 7 C -0.22 -12.43 10.43 84.03 0.88 -11.55 16 8 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 9 N -0.76 -34.86 4.58 -320.54 -1.47 -36.33 16 10 C 0.17 6.01 3.22 45.50 0.15 6.16 16 11 H 0.05 1.95 8.09 -2.39 -0.02 1.94 16 12 C -0.14 -4.26 6.51 31.19 0.20 -4.05 16 13 C -0.11 -2.18 5.58 31.46 0.18 -2.00 16 14 C -0.08 -1.36 4.16 -8.78 -0.04 -1.39 16 15 H 0.14 1.40 8.14 -2.39 -0.02 1.39 16 16 C 0.10 1.34 5.75 86.65 0.50 1.84 16 17 N -0.62 -13.90 3.32 -812.07 -2.70 -16.60 16 18 C 0.52 12.08 7.85 87.66 0.69 12.77 16 19 O -0.59 -20.12 16.23 -3.03 -0.05 -20.17 16 20 C -0.12 -1.37 4.88 29.85 0.15 -1.22 16 21 C -0.05 -0.66 4.68 29.85 0.14 -0.52 16 22 C -0.18 -2.08 5.17 -19.70 -0.10 -2.18 16 23 C 0.15 1.80 11.01 84.70 0.93 2.73 16 24 N -0.54 -8.23 10.44 -200.04 -2.09 -10.32 16 25 C 0.28 3.89 12.29 180.88 2.22 6.11 16 26 N -0.54 -8.39 10.44 -200.04 -2.09 -10.48 16 27 C 0.14 1.84 11.01 84.70 0.93 2.78 16 28 C 0.11 3.46 4.37 86.88 0.38 3.84 16 29 C -0.10 -2.63 4.14 -8.73 -0.04 -2.67 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 32 H 0.36 16.81 3.16 -92.71 -0.29 16.52 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.04 1.46 7.91 -2.38 -0.02 1.44 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.18 7.31 -2.39 -0.02 1.17 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.86 7.84 -2.39 -0.02 0.84 16 39 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 1.19 8.06 -2.39 -0.02 1.17 16 42 H 0.08 1.19 8.06 -2.38 -0.02 1.17 16 43 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.05 1.88 6.29 -2.39 -0.02 1.86 16 47 H 0.04 1.67 7.96 -2.38 -0.02 1.65 16 Total: -1.00 -80.89 376.21 2.07 -78.82 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.62 Total: 20.77 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 7.63 Total: 7.55 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -8.04 Total: -136.91 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Total: -80.89 2.07 -78.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026313119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.654 kcal (2) G-P(sol) polarization free energy of solvation -80.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds