Wall clock time and date at job start Tue Mar 31 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99967 * 3 2 1 5 5 H 1.48495 * 109.47253 * 29.99701 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00207 * 3 2 1 7 7 C 1.38807 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.47161 * 125.59745 * 359.97438 * 9 7 2 11 11 C 1.54628 * 107.34398 * 179.10706 * 10 9 7 12 12 C 1.53476 * 102.74436 * 339.34880 * 11 10 9 13 13 C 1.53490 * 111.80933 * 154.35599 * 12 11 10 14 14 C 1.55429 * 101.30299 * 88.09086 * 13 12 11 15 15 N 1.47577 * 104.91696 * 35.61865 * 14 13 12 16 16 C 1.34780 * 125.67488 * 156.12125 * 15 14 13 17 17 O 1.21282 * 119.99875 * 179.69083 * 16 15 14 18 18 C 1.50698 * 119.99987 * 359.68602 * 16 15 14 19 19 C 1.52995 * 109.47023 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47207 * 180.02562 * 19 18 16 21 21 C 1.38621 * 120.45077 * 125.00099 * 20 19 18 22 22 C 1.38578 * 118.39885 * 179.97438 * 21 20 19 23 23 N 1.32344 * 119.10484 * 0.27991 * 22 21 20 24 24 C 1.31783 * 120.82016 * 359.43130 * 23 22 21 25 25 N 1.31811 * 121.75410 * 0.58090 * 24 23 22 26 26 C 1.47449 * 108.65030 * 335.85363 * 15 14 13 27 27 C 1.47750 * 125.60306 * 179.97438 * 9 7 2 28 28 H 0.96997 * 120.00187 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.86739 * 59.66619 * 10 9 7 30 30 H 1.08999 * 109.86696 * 298.54556 * 10 9 7 31 31 H 1.08997 * 110.75935 * 221.03448 * 11 10 9 32 32 H 1.08997 * 110.91296 * 97.72780 * 11 10 9 33 33 H 1.09000 * 111.04044 * 206.28684 * 13 12 11 34 34 H 1.09000 * 111.04114 * 330.19149 * 13 12 11 35 35 H 1.09004 * 110.46248 * 276.73097 * 14 13 12 36 36 H 1.08996 * 110.30598 * 154.43331 * 14 13 12 37 37 H 1.09003 * 109.47249 * 60.00313 * 18 16 15 38 38 H 1.09006 * 109.47118 * 300.00329 * 18 16 15 39 39 H 1.09002 * 109.47179 * 60.00426 * 19 18 16 40 40 H 1.09005 * 109.47560 * 300.00220 * 19 18 16 41 41 H 1.08001 * 120.79567 * 359.95603 * 21 20 19 42 42 H 1.08002 * 120.44322 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.12127 * 180.27205 * 24 23 22 44 44 H 1.08992 * 109.99735 * 121.77729 * 26 15 14 45 45 H 1.08998 * 109.99508 * 243.06838 * 26 15 14 46 46 H 1.09008 * 110.39601 * 83.51950 * 27 9 7 47 47 H 1.09005 * 110.39666 * 321.12240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1388 -2.5317 0.0028 11 6 -0.4535 -4.0454 -0.0193 12 6 0.8479 -4.6539 -0.5594 13 6 1.0312 -6.1072 -0.1008 14 6 0.2826 -6.8779 -1.2239 15 7 0.5517 -6.1106 -2.4555 16 6 0.5094 -6.5991 -3.7110 17 8 0.7443 -5.8720 -4.6528 18 6 0.1704 -8.0488 -3.9444 19 6 0.1914 -8.3421 -5.4458 20 6 -0.1482 -9.7917 -5.6793 21 6 -1.1912 -10.1419 -6.5226 22 6 -1.4662 -11.4875 -6.7071 23 7 -0.7326 -12.3875 -6.0719 24 6 0.2550 -12.0176 -5.2818 25 7 0.5455 -10.7474 -5.0824 26 6 0.8681 -4.7191 -2.0845 27 6 1.9362 -3.7335 0.0017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5587 -2.0530 -0.8819 30 1 -0.5545 -2.0799 0.9034 31 1 -1.2863 -4.2572 -0.6898 32 1 -0.6644 -4.4137 0.9847 33 1 2.0866 -6.3783 -0.0721 34 1 0.5601 -6.2743 0.8678 35 1 -0.7879 -6.9035 -1.0201 36 1 0.6759 -7.8903 -1.3149 37 1 -0.8227 -8.2583 -3.5468 38 1 0.9037 -8.6790 -3.4410 39 1 1.1847 -8.1328 -5.8430 40 1 -0.5416 -7.7119 -5.9495 41 1 -1.7754 -9.3842 -7.0235 42 1 -2.2715 -11.7974 -7.3566 43 1 0.8389 -12.7753 -4.7803 44 1 1.8568 -4.4499 -2.4560 45 1 0.1186 -4.0437 -2.4970 46 1 2.1990 -4.0314 1.0169 47 1 2.8170 -3.7512 -0.6402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041331371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:36 Heat of formation + Delta-G solvation = 39.277218 kcal Electronic energy + Delta-G solvation = -27700.236298 eV Core-core repulsion = 23883.660466 eV Total energy + Delta-G solvation = -3816.575832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.40033 -40.27377 -38.52717 -35.72320 -35.26339 -33.15388 -32.71868 -31.44342 -30.51193 -29.07536 -28.45172 -26.65242 -25.15066 -24.71687 -23.88329 -22.53752 -22.27015 -20.24197 -19.16040 -18.81580 -17.93825 -17.47886 -16.88201 -16.43480 -16.16380 -15.84811 -15.43925 -15.20920 -14.73255 -14.55895 -14.33345 -14.00727 -13.82248 -13.48291 -13.16296 -12.97798 -12.93869 -12.57077 -12.27280 -12.03422 -11.91853 -11.67331 -11.55296 -11.35411 -11.23887 -11.20081 -10.90175 -10.88204 -10.76119 -10.23148 -10.05922 -10.02431 -9.97352 -9.79135 -9.70302 -9.62017 -9.58288 -8.59468 -8.50832 -6.82162 -5.69785 -3.03182 0.51847 0.65246 2.68754 3.00717 3.39501 3.41814 3.46744 3.48365 3.64394 3.79507 4.03990 4.41873 4.50768 4.64439 4.65410 4.66926 4.76374 4.83193 4.95463 4.99506 5.11891 5.24444 5.31582 5.37389 5.40925 5.49514 5.52884 5.65873 5.74088 5.81973 5.86048 5.95276 6.00254 6.01734 6.16323 6.24075 6.30502 6.34839 6.50138 6.56434 6.61029 6.72395 6.79911 7.56658 7.61576 7.62332 7.69663 7.83500 8.21716 8.26529 9.23261 9.83327 10.48900 11.41920 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.002123 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.299887 B =13185.537259 C =13565.932140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.118 4.118 14 C 0.100 3.900 15 N -0.617 5.617 16 C 0.525 3.475 17 O -0.543 6.543 18 C -0.125 4.125 19 C -0.058 4.058 20 C 0.182 3.818 21 C -0.224 4.224 22 C 0.148 3.852 23 N -0.528 5.528 24 C 0.296 3.704 25 N -0.518 5.518 26 C 0.133 3.867 27 C 0.151 3.849 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.024 0.976 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -23.987 -7.805 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.169 4.169 12 C -0.085 4.085 13 C -0.156 4.156 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.314 3.686 17 O -0.421 6.421 18 C -0.166 4.166 19 C -0.096 4.096 20 C 0.036 3.964 21 C -0.246 4.246 22 C -0.017 4.017 23 N -0.243 5.243 24 C 0.008 3.992 25 N -0.232 5.232 26 C 0.011 3.989 27 C 0.024 3.976 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.213 0.787 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.093 -24.074 -7.920 25.531 hybrid contribution -0.158 1.471 -0.347 1.520 sum -3.251 -22.602 -8.267 24.285 Atomic orbital electron populations 1.69962 1.04859 1.24986 1.57193 1.24798 0.95730 0.97669 1.02321 0.86121 0.78556 0.83526 0.77577 1.21608 1.21730 1.20723 1.19044 0.90424 0.82391 1.43640 0.90462 1.44585 1.01585 0.99768 1.87279 1.21224 0.84297 0.88042 1.01085 1.22759 0.94959 0.99674 0.99537 1.21581 0.98960 0.94382 0.93566 1.22629 1.00828 0.94459 0.97717 1.22460 1.00095 0.95392 0.84325 1.48771 1.68768 1.12194 1.05407 1.20187 0.77375 0.89663 0.81416 1.90724 1.49969 1.60448 1.40983 1.21507 1.04198 0.93865 0.97019 1.20392 1.04981 0.87954 0.96300 1.21794 0.89199 0.96244 0.89173 1.22858 1.00529 0.99040 1.02146 1.23253 0.95799 0.89039 0.93588 1.68425 1.07150 1.39585 1.09103 1.25014 0.91175 0.91654 0.91328 1.68265 1.29237 1.01747 1.23971 1.21722 1.01702 0.81270 0.94157 1.21295 0.93467 0.85756 0.97035 0.93797 0.93626 0.93896 0.92215 0.92038 0.90533 0.89697 0.91296 0.90872 0.89202 0.87844 0.88287 0.88798 0.83287 0.81468 0.78733 0.91164 0.90910 0.95798 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 10.30 55.49 0.57 -26.57 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.18 3.41 -170.57 -0.58 -15.76 16 10 C 0.18 4.23 5.36 -2.83 -0.02 4.22 16 11 C -0.13 -2.30 5.79 -25.63 -0.15 -2.45 16 12 C -0.08 -1.35 0.61 -154.09 -0.09 -1.44 16 13 C -0.12 -1.40 6.07 -25.19 -0.15 -1.55 16 14 C 0.10 1.06 6.67 -2.16 -0.01 1.05 16 15 N -0.62 -8.60 3.34 -170.75 -0.57 -9.17 16 16 C 0.53 7.35 7.85 -10.98 -0.09 7.26 16 17 O -0.54 -9.72 16.31 5.56 0.09 -9.63 16 18 C -0.13 -1.22 4.58 -27.89 -0.13 -1.34 16 19 C -0.06 -0.53 4.94 -27.88 -0.14 -0.67 16 20 C 0.18 1.59 6.21 -82.24 -0.51 1.08 16 21 C -0.22 -1.55 9.80 -39.31 -0.39 -1.93 16 22 C 0.15 1.01 11.30 -17.21 -0.19 0.82 16 23 N -0.53 -4.56 10.44 -14.58 -0.15 -4.72 16 24 C 0.30 2.44 12.29 -92.15 -1.13 1.31 16 25 N -0.52 -4.87 10.04 -10.79 -0.11 -4.98 16 26 C 0.13 2.27 6.07 -3.70 -0.02 2.25 16 27 C 0.15 2.99 6.25 -3.26 -0.02 2.97 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.22 7.39 -51.93 -0.38 0.84 16 30 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 31 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.06 0.98 7.80 -51.93 -0.40 0.58 16 33 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 39 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 41 H 0.15 0.68 8.01 -52.49 -0.42 0.26 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.07 1.31 7.58 -51.93 -0.39 0.92 16 45 H 0.07 1.41 7.78 -51.93 -0.40 1.01 16 46 H 0.02 0.47 8.05 -51.92 -0.42 0.05 16 47 H 0.04 0.79 7.66 -51.93 -0.40 0.40 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -34.21 379.56 -10.65 -44.86 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.30 Total: -1.77 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.29 Total: 4.75 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.84 Total: -61.20 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.21 -10.65 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.140 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds