Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99967 * 3 2 1 5 5 H 1.48495 * 109.47253 * 29.99701 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00207 * 3 2 1 7 7 C 1.38807 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.47161 * 125.59745 * 359.97438 * 9 7 2 11 11 C 1.54628 * 107.34398 * 179.10706 * 10 9 7 12 12 C 1.53476 * 102.74436 * 339.34880 * 11 10 9 13 13 C 1.53490 * 111.80933 * 154.35599 * 12 11 10 14 14 C 1.55429 * 101.30299 * 88.09086 * 13 12 11 15 15 N 1.47577 * 104.91696 * 35.61865 * 14 13 12 16 16 C 1.34780 * 125.67488 * 156.12125 * 15 14 13 17 17 O 1.21282 * 119.99875 * 179.69083 * 16 15 14 18 18 C 1.50698 * 119.99987 * 359.68602 * 16 15 14 19 19 C 1.52995 * 109.47023 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47207 * 180.02562 * 19 18 16 21 21 C 1.38621 * 120.45077 * 125.00099 * 20 19 18 22 22 C 1.38578 * 118.39885 * 179.97438 * 21 20 19 23 23 N 1.32344 * 119.10484 * 0.27991 * 22 21 20 24 24 C 1.31783 * 120.82016 * 359.43130 * 23 22 21 25 25 N 1.31811 * 121.75410 * 0.58090 * 24 23 22 26 26 C 1.47449 * 108.65030 * 335.85363 * 15 14 13 27 27 C 1.47750 * 125.60306 * 179.97438 * 9 7 2 28 28 H 0.96997 * 120.00187 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.86739 * 59.66619 * 10 9 7 30 30 H 1.08999 * 109.86696 * 298.54556 * 10 9 7 31 31 H 1.08997 * 110.75935 * 221.03448 * 11 10 9 32 32 H 1.08997 * 110.91296 * 97.72780 * 11 10 9 33 33 H 1.09000 * 111.04044 * 206.28684 * 13 12 11 34 34 H 1.09000 * 111.04114 * 330.19149 * 13 12 11 35 35 H 1.09004 * 110.46248 * 276.73097 * 14 13 12 36 36 H 1.08996 * 110.30598 * 154.43331 * 14 13 12 37 37 H 1.09003 * 109.47249 * 60.00313 * 18 16 15 38 38 H 1.09006 * 109.47118 * 300.00329 * 18 16 15 39 39 H 1.09002 * 109.47179 * 60.00426 * 19 18 16 40 40 H 1.09005 * 109.47560 * 300.00220 * 19 18 16 41 41 H 1.08001 * 120.79567 * 359.95603 * 21 20 19 42 42 H 1.08002 * 120.44322 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.12127 * 180.27205 * 24 23 22 44 44 H 1.08992 * 109.99735 * 121.77729 * 26 15 14 45 45 H 1.08998 * 109.99508 * 243.06838 * 26 15 14 46 46 H 1.09008 * 110.39601 * 83.51950 * 27 9 7 47 47 H 1.09005 * 110.39666 * 321.12240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1388 -2.5317 0.0028 11 6 -0.4535 -4.0454 -0.0193 12 6 0.8479 -4.6539 -0.5594 13 6 1.0312 -6.1072 -0.1008 14 6 0.2826 -6.8779 -1.2239 15 7 0.5517 -6.1106 -2.4555 16 6 0.5094 -6.5991 -3.7110 17 8 0.7443 -5.8720 -4.6528 18 6 0.1704 -8.0488 -3.9444 19 6 0.1914 -8.3421 -5.4458 20 6 -0.1482 -9.7917 -5.6793 21 6 -1.1912 -10.1419 -6.5226 22 6 -1.4662 -11.4875 -6.7071 23 7 -0.7326 -12.3875 -6.0719 24 6 0.2550 -12.0176 -5.2818 25 7 0.5455 -10.7474 -5.0824 26 6 0.8681 -4.7191 -2.0845 27 6 1.9362 -3.7335 0.0017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5587 -2.0530 -0.8819 30 1 -0.5545 -2.0799 0.9034 31 1 -1.2863 -4.2572 -0.6898 32 1 -0.6644 -4.4137 0.9847 33 1 2.0866 -6.3783 -0.0721 34 1 0.5601 -6.2743 0.8678 35 1 -0.7879 -6.9035 -1.0201 36 1 0.6759 -7.8903 -1.3149 37 1 -0.8227 -8.2583 -3.5468 38 1 0.9037 -8.6790 -3.4410 39 1 1.1847 -8.1328 -5.8430 40 1 -0.5416 -7.7119 -5.9495 41 1 -1.7754 -9.3842 -7.0235 42 1 -2.2715 -11.7974 -7.3566 43 1 0.8389 -12.7753 -4.7803 44 1 1.8568 -4.4499 -2.4560 45 1 0.1186 -4.0437 -2.4970 46 1 2.1990 -4.0314 1.0169 47 1 2.8170 -3.7512 -0.6402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041331371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = 17.999383 kcal Electronic energy + Delta-G solvation = -27701.158974 eV Core-core repulsion = 23883.660466 eV Total energy + Delta-G solvation = -3817.498509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.98061 -41.46769 -39.83601 -37.21325 -35.97551 -34.50949 -33.72787 -32.44512 -31.79411 -30.64266 -29.82121 -27.88178 -26.57551 -25.40970 -25.14807 -23.69509 -22.97632 -22.12612 -20.27189 -20.12385 -18.84373 -18.51672 -18.24350 -17.33041 -17.20246 -16.77275 -16.50643 -16.30964 -16.04986 -15.79370 -15.61158 -15.39952 -14.66087 -14.51816 -14.45303 -14.17188 -13.93909 -13.84895 -13.57985 -13.21151 -13.17232 -13.05088 -12.95633 -12.83286 -12.55723 -12.47993 -12.28387 -12.03297 -11.86539 -11.78193 -11.54459 -11.52723 -11.42367 -11.21446 -10.92345 -10.70696 -10.51782 -10.19357 -9.68068 -8.88559 -7.85300 -5.20044 -0.02824 0.10332 1.43607 1.45887 1.54152 1.60564 1.95112 2.48642 2.82710 3.03780 3.30492 3.33086 3.40416 3.51167 3.60675 3.65422 3.78303 3.81908 4.07097 4.10094 4.16980 4.24557 4.26387 4.31418 4.45384 4.55721 4.63001 4.65903 4.68737 4.74922 4.78018 4.83316 4.91751 4.94910 5.00470 5.02649 5.06272 5.08619 5.25106 5.32357 5.38558 5.45373 5.47686 5.68556 5.78269 6.06419 6.19896 6.55418 7.10564 7.12199 7.14290 7.78063 8.41908 9.24911 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.002123 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.299887 B =13185.537259 C =13565.932140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.628 5.628 10 C 0.185 3.815 11 C -0.112 4.112 12 C -0.072 4.072 13 C -0.108 4.108 14 C 0.100 3.900 15 N -0.617 5.617 16 C 0.520 3.480 17 O -0.593 6.593 18 C -0.109 4.109 19 C -0.054 4.054 20 C 0.169 3.831 21 C -0.221 4.221 22 C 0.146 3.854 23 N -0.546 5.546 24 C 0.287 3.713 25 N -0.536 5.536 26 C 0.139 3.861 27 C 0.146 3.854 28 H 0.245 0.755 29 H 0.001 0.999 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.171 0.829 42 H 0.198 0.802 43 H 0.217 0.783 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.041 0.959 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -27.233 -7.226 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.060 3.940 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.146 4.146 14 C -0.022 4.022 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.474 6.474 18 C -0.149 4.149 19 C -0.092 4.092 20 C 0.023 3.977 21 C -0.243 4.243 22 C -0.019 4.019 23 N -0.261 5.261 24 C 0.000 4.000 25 N -0.251 5.251 26 C 0.016 3.984 27 C 0.021 3.979 28 H 0.055 0.945 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.189 0.811 42 H 0.215 0.785 43 H 0.233 0.767 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.299 -27.379 -7.314 28.530 hybrid contribution -0.061 2.468 -0.583 2.536 sum -3.360 -24.911 -7.896 26.348 Atomic orbital electron populations 1.70195 1.06232 1.25108 1.58566 1.25650 0.96651 1.01034 1.02934 0.85101 0.77785 0.79304 0.77308 1.21704 1.21988 1.19169 1.19445 0.90960 0.83875 1.42502 0.90113 1.44905 1.02430 1.01117 1.87032 1.20970 0.83636 0.92133 0.97271 1.22591 0.96032 0.94775 1.01596 1.21426 0.96491 0.96829 0.92647 1.22669 1.02248 0.90295 0.99351 1.22750 1.01355 0.96256 0.81804 1.48864 1.68380 1.10985 1.06819 1.21042 0.76138 0.91121 0.80668 1.90703 1.52056 1.62046 1.42565 1.21460 1.05629 0.90230 0.97584 1.20290 1.04154 0.88712 0.96042 1.21750 0.90086 0.95658 0.90197 1.23098 0.99960 0.99777 1.01424 1.23797 0.95989 0.88816 0.93273 1.68482 1.07663 1.40326 1.09628 1.25461 0.91382 0.91767 0.91405 1.68247 1.29759 1.02275 1.24773 1.21385 0.99138 0.83066 0.94825 1.21520 0.94353 0.84118 0.97922 0.94541 0.98099 0.97409 0.90974 0.89242 0.89459 0.87046 0.89404 0.87341 0.86883 0.86560 0.89998 0.88667 0.81139 0.78524 0.76682 0.93751 0.94424 0.94114 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 10.30 21.65 0.22 -58.45 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -32.42 3.41 -693.57 -2.36 -34.79 16 10 C 0.18 9.15 5.36 86.81 0.47 9.62 16 11 C -0.11 -3.81 5.79 31.31 0.18 -3.63 16 12 C -0.07 -2.25 0.61 -51.91 -0.03 -2.28 16 13 C -0.11 -2.10 6.07 31.59 0.19 -1.90 16 14 C 0.10 1.66 6.67 87.01 0.58 2.24 16 15 N -0.62 -16.19 3.34 -812.51 -2.72 -18.91 16 16 C 0.52 14.04 7.85 87.66 0.69 14.73 16 17 O -0.59 -21.74 16.31 -3.04 -0.05 -21.79 16 18 C -0.11 -1.85 4.58 29.85 0.14 -1.71 16 19 C -0.05 -0.92 4.94 29.85 0.15 -0.77 16 20 C 0.17 2.62 6.21 42.58 0.26 2.89 16 21 C -0.22 -2.53 9.80 22.44 0.22 -2.31 16 22 C 0.15 1.62 11.30 84.70 0.96 2.58 16 23 N -0.55 -8.28 10.44 -200.05 -2.09 -10.37 16 24 C 0.29 4.17 12.29 180.88 2.22 6.40 16 25 N -0.54 -9.04 10.04 -188.06 -1.89 -10.93 16 26 C 0.14 4.81 6.07 86.08 0.52 5.33 16 27 C 0.15 5.73 6.25 86.20 0.54 6.27 16 28 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.00 0.04 7.39 -2.39 -0.02 0.02 16 30 H 0.01 0.43 7.50 -2.39 -0.02 0.41 16 31 H 0.07 2.29 7.94 -2.39 -0.02 2.27 16 32 H 0.09 2.59 7.80 -2.39 -0.02 2.57 16 33 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.11 1.69 7.76 -2.39 -0.02 1.67 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.16 7.49 -2.39 -0.02 1.14 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 1.73 7.70 -2.38 -0.02 1.71 16 39 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 40 H 0.09 1.58 7.90 -2.38 -0.02 1.56 16 41 H 0.17 1.10 8.01 -2.91 -0.02 1.08 16 42 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.04 1.74 7.58 -2.39 -0.02 1.72 16 45 H 0.04 1.54 7.78 -2.39 -0.02 1.53 16 46 H 0.04 1.50 8.05 -2.38 -0.02 1.48 16 47 H 0.03 1.39 7.66 -2.38 -0.02 1.38 16 Total: -1.00 -80.26 379.56 2.52 -77.75 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.96 Total: 7.35 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 8.41 Total: 21.04 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -8.83 Total: -133.44 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -80.26 2.52 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.744 kcal (2) G-P(sol) polarization free energy of solvation -80.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds