Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00429 * 2 1 4 4 H 1.48496 * 109.46740 * 239.99966 * 3 2 1 5 5 H 1.48493 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46923 * 119.99933 * 3 2 1 7 7 C 1.38818 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.47566 * 125.66949 * 0.03273 * 9 7 2 11 11 C 1.55195 * 105.00085 * 203.83397 * 10 9 7 12 12 C 1.53640 * 101.41408 * 324.51011 * 11 10 9 13 13 C 1.53093 * 111.77973 * 272.09087 * 12 11 10 14 14 C 1.54343 * 104.72930 * 218.76906 * 13 12 11 15 15 N 1.47618 * 107.05172 * 357.71199 * 14 13 12 16 16 C 1.34776 * 126.91887 * 204.98444 * 15 14 13 17 17 O 1.21281 * 119.99949 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99972 * 0.02562 * 16 15 14 19 19 C 1.53007 * 109.47439 * 180.02562 * 18 16 15 20 20 C 1.50688 * 109.47438 * 180.02562 * 19 18 16 21 21 C 1.38623 * 120.44906 * 125.00161 * 20 19 18 22 22 C 1.38569 * 118.40473 * 180.02562 * 21 20 19 23 23 N 1.32359 * 119.10268 * 0.02562 * 22 21 20 24 24 C 1.31777 * 120.81926 * 359.97438 * 23 22 21 25 25 N 1.31807 * 121.75220 * 359.71537 * 24 23 22 26 26 C 1.48409 * 106.16124 * 25.00106 * 15 14 13 27 27 C 1.47405 * 125.67501 * 179.97438 * 9 7 2 28 28 H 0.97000 * 119.99151 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.33409 * 322.70713 * 10 9 7 30 30 H 1.08996 * 110.33433 * 84.84730 * 10 9 7 31 31 H 1.09001 * 111.02839 * 206.48345 * 11 10 9 32 32 H 1.08997 * 111.03872 * 82.54867 * 11 10 9 33 33 H 1.09002 * 110.40771 * 99.92293 * 13 12 11 34 34 H 1.08998 * 110.40527 * 337.61550 * 13 12 11 35 35 H 1.09002 * 109.92377 * 117.06131 * 14 13 12 36 36 H 1.09001 * 109.91973 * 238.35989 * 14 13 12 37 37 H 1.09001 * 109.47557 * 300.00466 * 18 16 15 38 38 H 1.09005 * 109.46829 * 60.00523 * 18 16 15 39 39 H 1.09001 * 109.46988 * 300.00645 * 19 18 16 40 40 H 1.09005 * 109.46647 * 59.99823 * 19 18 16 41 41 H 1.08003 * 120.79449 * 0.02586 * 21 20 19 42 42 H 1.08000 * 120.45194 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.12354 * 180.02562 * 24 23 22 44 44 H 1.09000 * 110.68222 * 80.83739 * 26 15 14 45 45 H 1.08997 * 110.67922 * 204.00935 * 26 15 14 46 46 H 1.08999 * 109.98284 * 58.56811 * 27 9 7 47 47 H 1.08995 * 110.02197 * 297.27691 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1430 -2.5339 -0.0007 11 6 -0.4074 -3.9380 0.6051 12 6 0.7831 -4.7367 0.0525 13 6 0.4745 -5.3391 -1.3207 14 6 1.1334 -6.7345 -1.2941 15 7 1.8180 -6.8652 0.0072 16 6 2.8693 -7.6587 0.2929 17 8 3.3357 -7.6678 1.4124 18 6 3.4653 -8.5347 -0.7788 19 6 4.6366 -9.3282 -0.1961 20 6 5.2329 -10.2036 -1.2679 21 6 6.5843 -10.1262 -1.5669 22 6 7.0879 -10.9504 -2.5605 23 7 6.2672 -11.7783 -3.1874 24 6 4.9875 -11.8247 -2.8764 25 7 4.4748 -11.0602 -1.9330 26 6 1.1151 -5.9473 0.9377 27 6 1.9326 -3.7314 -0.0016 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6003 -1.7621 0.6185 30 1 -0.5289 -2.4800 -1.0186 31 1 -1.3525 -4.3467 0.2475 32 1 -0.3845 -3.9049 1.6944 33 1 0.9109 -4.7278 -2.1107 34 1 -0.6024 -5.4299 -1.4626 35 1 0.3709 -7.5073 -1.3917 36 1 1.8573 -6.8190 -2.1046 37 1 2.7067 -9.2252 -1.1474 38 1 3.8204 -7.9127 -1.6005 39 1 5.3953 -8.6380 0.1727 40 1 4.2810 -9.9501 0.6255 41 1 7.2292 -9.4399 -1.0381 42 1 8.1357 -10.9176 -2.8200 43 1 4.3426 -12.5109 -3.4052 44 1 0.2024 -6.4074 1.3163 45 1 1.7700 -5.6561 1.7590 46 1 2.5734 -3.8512 0.8719 47 1 2.5132 -3.8777 -0.9123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041331372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = 41.679981 kcal Electronic energy + Delta-G solvation = -27769.031524 eV Core-core repulsion = 23952.559883 eV Total energy + Delta-G solvation = -3816.471641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38215 -40.25393 -38.50478 -35.72873 -35.25440 -33.14105 -32.73343 -31.44546 -30.36396 -29.29964 -28.41084 -26.50424 -25.30208 -24.71554 -23.73268 -22.62211 -22.22561 -20.33290 -19.23066 -18.66039 -17.91009 -17.49366 -16.89587 -16.50645 -16.05152 -15.82594 -15.49975 -15.10337 -14.85177 -14.59823 -14.20592 -14.04096 -13.93254 -13.49010 -13.37645 -12.82129 -12.76919 -12.63148 -12.42635 -12.05048 -11.80237 -11.57379 -11.51025 -11.30042 -11.21083 -11.17623 -10.88787 -10.86900 -10.78578 -10.23642 -10.06529 -10.01209 -9.96369 -9.84310 -9.73774 -9.59530 -9.48875 -8.67538 -8.57243 -6.83257 -5.65613 -3.06640 0.53863 0.66964 2.65298 2.95573 3.40319 3.41115 3.44535 3.45761 3.65491 3.81456 4.05243 4.42093 4.48153 4.65262 4.67815 4.72989 4.77949 4.83965 4.98521 5.04340 5.13925 5.25106 5.30138 5.39087 5.42486 5.48543 5.57312 5.65376 5.74306 5.77688 5.83813 5.95269 5.96465 6.01962 6.06827 6.22247 6.35684 6.37598 6.54807 6.62712 6.62903 6.77087 6.86149 7.50100 7.59620 7.62030 7.71288 7.85061 8.16886 8.35635 9.22122 9.82635 10.48036 11.38431 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.002315 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.159426 B =12093.398835 C =12823.491478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.155 3.845 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.116 4.116 14 C 0.102 3.898 15 N -0.619 5.619 16 C 0.532 3.468 17 O -0.546 6.546 18 C -0.126 4.126 19 C -0.057 4.057 20 C 0.182 3.818 21 C -0.223 4.223 22 C 0.149 3.851 23 N -0.528 5.528 24 C 0.296 3.704 25 N -0.518 5.518 26 C 0.120 3.880 27 C 0.155 3.845 28 H 0.252 0.748 29 H 0.105 0.895 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.196 0.804 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.024 0.976 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -21.969 -4.919 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.331 5.331 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.084 4.084 13 C -0.154 4.154 14 C -0.021 4.021 15 N -0.352 5.352 16 C 0.321 3.679 17 O -0.424 6.424 18 C -0.167 4.167 19 C -0.096 4.096 20 C 0.035 3.965 21 C -0.245 4.245 22 C -0.017 4.017 23 N -0.242 5.242 24 C 0.008 3.992 25 N -0.233 5.233 26 C -0.002 4.002 27 C 0.029 3.971 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.167 0.833 42 H 0.186 0.814 43 H 0.213 0.787 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.042 0.958 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.887 -22.441 -4.792 23.690 hybrid contribution 1.021 1.394 0.158 1.735 sum 6.908 -21.047 -4.634 22.631 Atomic orbital electron populations 1.69789 1.04851 1.24845 1.57697 1.24775 0.95734 0.97658 1.02514 0.86156 0.78411 0.83077 0.77891 1.21270 1.21566 1.21169 1.19028 0.90451 0.82509 1.43001 0.90672 1.44634 1.01902 0.99629 1.86888 1.21960 0.84600 0.92250 0.98191 1.22873 0.94926 0.98933 1.00294 1.21616 0.98350 0.94122 0.94284 1.22373 1.00969 0.94045 0.97986 1.22246 0.96250 0.98298 0.85324 1.48938 1.31225 1.42196 1.12857 1.20144 0.78691 0.79737 0.89304 1.90708 1.60984 1.67358 1.23379 1.21510 0.98742 0.98562 0.97870 1.20383 0.97891 0.96692 0.94588 1.21779 0.90425 0.91263 0.92991 1.22863 0.97381 1.03065 1.01197 1.23258 1.00202 0.88582 0.89612 1.68427 1.05695 1.21768 1.28345 1.25003 0.89639 0.93996 0.90564 1.68252 1.40467 1.06445 1.08101 1.22418 0.96199 0.88433 0.93113 1.21075 0.92797 0.85426 0.97832 0.93713 0.87742 0.96963 0.91960 0.91835 0.90090 0.90402 0.91500 0.91081 0.87856 0.89032 0.88762 0.88369 0.83257 0.81444 0.78749 0.91098 0.89687 0.95849 0.96235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.10 55.49 0.56 -26.12 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.34 3.41 -170.40 -0.58 -15.92 16 10 C 0.15 3.64 5.84 -2.30 -0.01 3.62 16 11 C -0.13 -2.34 6.05 -25.24 -0.15 -2.49 16 12 C -0.08 -1.35 0.68 -153.91 -0.11 -1.46 16 13 C -0.12 -1.56 6.04 -25.98 -0.16 -1.72 16 14 C 0.10 1.13 6.77 -2.73 -0.02 1.11 16 15 N -0.62 -8.31 3.31 -170.03 -0.56 -8.87 16 16 C 0.53 7.25 7.89 -10.99 -0.09 7.16 16 17 O -0.55 -9.29 16.21 5.56 0.09 -9.20 16 18 C -0.13 -1.25 4.65 -27.88 -0.13 -1.38 16 19 C -0.06 -0.53 4.94 -27.89 -0.14 -0.67 16 20 C 0.18 1.63 6.20 -82.25 -0.51 1.12 16 21 C -0.22 -1.63 9.80 -39.32 -0.39 -2.01 16 22 C 0.15 1.07 11.30 -17.20 -0.19 0.88 16 23 N -0.53 -4.73 10.44 -14.58 -0.15 -4.88 16 24 C 0.30 2.51 12.29 -92.16 -1.13 1.38 16 25 N -0.52 -4.97 10.05 -10.80 -0.11 -5.07 16 26 C 0.12 1.79 6.04 -2.67 -0.02 1.78 16 27 C 0.15 3.22 6.46 -3.65 -0.02 3.20 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 2.80 5.89 -51.93 -0.31 2.49 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 32 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 33 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 34 H 0.08 0.95 7.56 -51.93 -0.39 0.55 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.69 7.55 -51.93 -0.39 0.30 16 37 H 0.10 0.95 7.99 -51.93 -0.41 0.53 16 38 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 39 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 40 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.15 0.75 8.01 -52.48 -0.42 0.33 16 42 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.08 1.43 7.40 -51.93 -0.38 1.04 16 46 H 0.02 0.52 7.56 -51.93 -0.39 0.12 16 47 H 0.02 0.42 7.60 -51.93 -0.39 0.02 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -33.64 378.49 -10.59 -44.23 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.21 Total: -0.69 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.31 Total: 3.76 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.84 Total: -60.87 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.64 -10.59 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.913 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds