Wall clock time and date at job start Tue Mar 31 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00429 * 2 1 4 4 H 1.48496 * 109.46740 * 239.99966 * 3 2 1 5 5 H 1.48493 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46923 * 119.99933 * 3 2 1 7 7 C 1.38818 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.47566 * 125.66949 * 0.03273 * 9 7 2 11 11 C 1.55195 * 105.00085 * 203.83397 * 10 9 7 12 12 C 1.53640 * 101.41408 * 324.51011 * 11 10 9 13 13 C 1.53093 * 111.77973 * 272.09087 * 12 11 10 14 14 C 1.54343 * 104.72930 * 218.76906 * 13 12 11 15 15 N 1.47618 * 107.05172 * 357.71199 * 14 13 12 16 16 C 1.34776 * 126.91887 * 204.98444 * 15 14 13 17 17 O 1.21281 * 119.99949 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99972 * 0.02562 * 16 15 14 19 19 C 1.53007 * 109.47439 * 180.02562 * 18 16 15 20 20 C 1.50688 * 109.47438 * 180.02562 * 19 18 16 21 21 C 1.38623 * 120.44906 * 125.00161 * 20 19 18 22 22 C 1.38569 * 118.40473 * 180.02562 * 21 20 19 23 23 N 1.32359 * 119.10268 * 0.02562 * 22 21 20 24 24 C 1.31777 * 120.81926 * 359.97438 * 23 22 21 25 25 N 1.31807 * 121.75220 * 359.71537 * 24 23 22 26 26 C 1.48409 * 106.16124 * 25.00106 * 15 14 13 27 27 C 1.47405 * 125.67501 * 179.97438 * 9 7 2 28 28 H 0.97000 * 119.99151 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.33409 * 322.70713 * 10 9 7 30 30 H 1.08996 * 110.33433 * 84.84730 * 10 9 7 31 31 H 1.09001 * 111.02839 * 206.48345 * 11 10 9 32 32 H 1.08997 * 111.03872 * 82.54867 * 11 10 9 33 33 H 1.09002 * 110.40771 * 99.92293 * 13 12 11 34 34 H 1.08998 * 110.40527 * 337.61550 * 13 12 11 35 35 H 1.09002 * 109.92377 * 117.06131 * 14 13 12 36 36 H 1.09001 * 109.91973 * 238.35989 * 14 13 12 37 37 H 1.09001 * 109.47557 * 300.00466 * 18 16 15 38 38 H 1.09005 * 109.46829 * 60.00523 * 18 16 15 39 39 H 1.09001 * 109.46988 * 300.00645 * 19 18 16 40 40 H 1.09005 * 109.46647 * 59.99823 * 19 18 16 41 41 H 1.08003 * 120.79449 * 0.02586 * 21 20 19 42 42 H 1.08000 * 120.45194 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.12354 * 180.02562 * 24 23 22 44 44 H 1.09000 * 110.68222 * 80.83739 * 26 15 14 45 45 H 1.08997 * 110.67922 * 204.00935 * 26 15 14 46 46 H 1.08999 * 109.98284 * 58.56811 * 27 9 7 47 47 H 1.08995 * 110.02197 * 297.27691 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1430 -2.5339 -0.0007 11 6 -0.4074 -3.9380 0.6051 12 6 0.7831 -4.7367 0.0525 13 6 0.4745 -5.3391 -1.3207 14 6 1.1334 -6.7345 -1.2941 15 7 1.8180 -6.8652 0.0072 16 6 2.8693 -7.6587 0.2929 17 8 3.3357 -7.6678 1.4124 18 6 3.4653 -8.5347 -0.7788 19 6 4.6366 -9.3282 -0.1961 20 6 5.2329 -10.2036 -1.2679 21 6 6.5843 -10.1262 -1.5669 22 6 7.0879 -10.9504 -2.5605 23 7 6.2672 -11.7783 -3.1874 24 6 4.9875 -11.8247 -2.8764 25 7 4.4748 -11.0602 -1.9330 26 6 1.1151 -5.9473 0.9377 27 6 1.9326 -3.7314 -0.0016 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6003 -1.7621 0.6185 30 1 -0.5289 -2.4800 -1.0186 31 1 -1.3525 -4.3467 0.2475 32 1 -0.3845 -3.9049 1.6944 33 1 0.9109 -4.7278 -2.1107 34 1 -0.6024 -5.4299 -1.4626 35 1 0.3709 -7.5073 -1.3917 36 1 1.8573 -6.8190 -2.1046 37 1 2.7067 -9.2252 -1.1474 38 1 3.8204 -7.9127 -1.6005 39 1 5.3953 -8.6380 0.1727 40 1 4.2810 -9.9501 0.6255 41 1 7.2292 -9.4399 -1.0381 42 1 8.1357 -10.9176 -2.8200 43 1 4.3426 -12.5109 -3.4052 44 1 0.2024 -6.4074 1.3163 45 1 1.7700 -5.6561 1.7590 46 1 2.5734 -3.8512 0.8719 47 1 2.5132 -3.8777 -0.9123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041331372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:45 Heat of formation + Delta-G solvation = 21.573891 kcal Electronic energy + Delta-G solvation = -27769.903390 eV Core-core repulsion = 23952.559883 eV Total energy + Delta-G solvation = -3817.343506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.98543 -41.42256 -39.79151 -37.21081 -35.97608 -34.51895 -33.73658 -32.42535 -31.74453 -30.65737 -29.86548 -27.78965 -26.73986 -25.34411 -24.98100 -23.85204 -22.97297 -22.16896 -20.36929 -19.92346 -18.87636 -18.51455 -18.28980 -17.34414 -17.13663 -16.78619 -16.47958 -16.31419 -16.02863 -15.70515 -15.65342 -15.48033 -14.76686 -14.50871 -14.44237 -14.11762 -13.97236 -13.75684 -13.60478 -13.37774 -13.13154 -13.04210 -12.93552 -12.70835 -12.57413 -12.36869 -12.30277 -12.06068 -11.80522 -11.79262 -11.54188 -11.51118 -11.40704 -11.24259 -10.90547 -10.73225 -10.52810 -10.20612 -9.67904 -8.89005 -7.78470 -5.22294 -0.03872 0.08981 1.44702 1.47679 1.54185 1.61522 1.95552 2.48134 2.81575 3.02905 3.27623 3.31677 3.38235 3.53561 3.60159 3.67956 3.78268 3.90008 4.06466 4.09229 4.16806 4.23536 4.26221 4.32732 4.37728 4.53911 4.63698 4.65091 4.70019 4.72684 4.77751 4.79573 4.88002 4.93151 4.97556 5.04828 5.08436 5.11094 5.22161 5.34881 5.39057 5.45236 5.46560 5.68080 5.83669 6.05052 6.31470 6.56997 7.10829 7.11866 7.13151 7.77411 8.41516 9.22811 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.002315 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.159426 B =12093.398835 C =12823.491478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.626 5.626 10 C 0.157 3.843 11 C -0.115 4.115 12 C -0.074 4.074 13 C -0.112 4.112 14 C 0.107 3.893 15 N -0.622 5.622 16 C 0.527 3.473 17 O -0.587 6.587 18 C -0.113 4.113 19 C -0.052 4.052 20 C 0.168 3.832 21 C -0.222 4.222 22 C 0.146 3.854 23 N -0.547 5.547 24 C 0.287 3.713 25 N -0.535 5.535 26 C 0.126 3.874 27 C 0.155 3.845 28 H 0.248 0.752 29 H 0.068 0.932 30 H -0.006 1.006 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.197 0.803 43 H 0.217 0.783 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.006 0.994 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -23.746 -6.143 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.032 3.968 11 C -0.154 4.154 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.015 4.015 15 N -0.354 5.354 16 C 0.318 3.682 17 O -0.468 6.468 18 C -0.153 4.153 19 C -0.090 4.090 20 C 0.022 3.978 21 C -0.244 4.244 22 C -0.019 4.019 23 N -0.261 5.261 24 C -0.001 4.001 25 N -0.250 5.250 26 C 0.003 3.997 27 C 0.029 3.971 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.012 0.988 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.188 0.812 42 H 0.214 0.786 43 H 0.234 0.766 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.024 0.976 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.177 -24.244 -6.037 25.737 hybrid contribution 0.978 1.962 0.544 2.259 sum 7.155 -22.282 -5.493 24.038 Atomic orbital electron populations 1.70044 1.06008 1.25119 1.58330 1.25594 0.96694 1.00774 1.02612 0.85155 0.77203 0.78910 0.78082 1.20461 1.21600 1.20590 1.19357 0.90777 0.84063 1.42980 0.90934 1.44946 1.02992 1.00560 1.86763 1.21761 0.83504 0.94758 0.96778 1.22727 0.97182 0.95542 0.99935 1.21480 0.95588 0.93544 0.96891 1.22362 1.02583 0.94947 0.95116 1.22392 0.97227 0.97446 0.84474 1.49040 1.31265 1.41627 1.13509 1.20807 0.78169 0.79675 0.89524 1.90690 1.62108 1.68721 1.25312 1.21463 0.99034 0.98164 0.96676 1.20283 0.97715 0.96536 0.94487 1.21784 0.91251 0.91560 0.93168 1.23103 0.96964 1.03216 1.01116 1.23791 1.01377 0.87733 0.89025 1.68483 1.06111 1.22501 1.29015 1.25468 0.90001 0.94139 0.90446 1.68241 1.41030 1.07008 1.08694 1.22250 0.96814 0.88280 0.92328 1.21179 0.94291 0.84908 0.96681 0.94240 0.91389 0.98774 0.88401 0.92073 0.91687 0.88182 0.88258 0.89300 0.86564 0.87786 0.88798 0.89473 0.81224 0.78584 0.76631 0.88689 0.92308 0.97602 0.96494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.21 10.10 21.65 0.22 -55.99 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.63 -32.68 3.41 -693.04 -2.36 -35.04 16 10 C 0.16 7.53 5.84 86.93 0.51 8.04 16 11 C -0.12 -3.98 6.05 31.56 0.19 -3.79 16 12 C -0.07 -2.33 0.68 -51.80 -0.04 -2.37 16 13 C -0.11 -2.72 6.04 31.08 0.19 -2.54 16 14 C 0.11 1.96 6.77 86.62 0.59 2.55 16 15 N -0.62 -15.37 3.31 -810.24 -2.68 -18.05 16 16 C 0.53 13.66 7.89 87.66 0.69 14.35 16 17 O -0.59 -19.93 16.21 -3.03 -0.05 -19.98 16 18 C -0.11 -2.01 4.65 29.85 0.14 -1.87 16 19 C -0.05 -0.90 4.94 29.85 0.15 -0.75 16 20 C 0.17 2.75 6.20 42.57 0.26 3.01 16 21 C -0.22 -2.81 9.80 22.44 0.22 -2.59 16 22 C 0.15 1.79 11.30 84.69 0.96 2.74 16 23 N -0.55 -8.83 10.44 -200.06 -2.09 -10.91 16 24 C 0.29 4.40 12.29 180.89 2.22 6.62 16 25 N -0.53 -9.38 10.05 -188.08 -1.89 -11.27 16 26 C 0.13 3.57 6.04 86.22 0.52 4.09 16 27 C 0.15 6.55 6.46 86.14 0.56 7.11 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.07 3.78 5.89 -2.39 -0.01 3.77 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.10 2.71 7.63 -2.39 -0.02 2.69 16 32 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.06 1.81 7.61 -2.39 -0.02 1.80 16 34 H 0.10 2.03 7.56 -2.39 -0.02 2.01 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.37 7.55 -2.39 -0.02 1.35 16 37 H 0.12 1.80 7.99 -2.39 -0.02 1.78 16 38 H 0.10 1.61 7.91 -2.38 -0.02 1.59 16 39 H 0.09 1.61 7.90 -2.39 -0.02 1.59 16 40 H 0.09 1.70 8.10 -2.38 -0.02 1.68 16 41 H 0.17 1.32 8.01 -2.91 -0.02 1.30 16 42 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 45 H 0.06 1.99 7.40 -2.39 -0.02 1.97 16 46 H 0.01 0.27 7.56 -2.39 -0.02 0.25 16 47 H 0.02 0.73 7.60 -2.39 -0.02 0.71 16 Total: -1.00 -75.97 378.49 2.62 -73.35 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.96 Total: 11.41 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 8.49 Total: 18.35 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -8.80 Total: -131.26 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.97 2.62 -73.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.920 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds