Wall clock time and date at job start Tue Mar 31 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47215 * 239.99449 * 3 2 1 5 5 H 1.48499 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47259 * 119.99753 * 3 2 1 7 7 C 1.38817 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99729 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67400 * 0.03914 * 9 7 2 11 11 C 1.55180 * 105.00903 * 203.82728 * 10 9 7 12 12 C 1.53659 * 101.41527 * 324.50932 * 11 10 9 13 13 C 1.53662 * 111.41339 * 155.02636 * 12 11 10 14 14 C 1.55426 * 101.31221 * 87.05958 * 13 12 11 15 15 N 1.47562 * 104.88045 * 35.82796 * 14 13 12 16 16 C 1.34782 * 125.67443 * 156.03015 * 15 14 13 17 17 O 1.21572 * 119.99998 * 179.69632 * 16 15 14 18 18 C 1.47710 * 119.99727 * 359.69466 * 16 15 14 19 19 N 1.31839 * 126.57536 * 359.97438 * 18 16 15 20 20 N 1.28465 * 110.06090 * 180.02562 * 19 18 16 21 21 H 0.96997 * 124.88239 * 180.25638 * 20 19 18 22 22 C 1.35255 * 110.22855 * 359.97438 * 20 19 18 23 23 C 1.35042 * 107.07739 * 0.02562 * 22 20 19 24 24 C 1.50953 * 110.52619 * 179.97438 * 23 22 20 25 25 C 1.54515 * 104.96400 * 343.23321 * 24 23 22 26 26 C 1.51232 * 142.76421 * 180.02562 * 22 20 19 27 27 C 1.47402 * 108.65272 * 335.77168 * 15 14 13 28 28 C 1.47399 * 125.67496 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.33608 * 322.71245 * 10 9 7 31 31 H 1.08997 * 110.33120 * 84.84265 * 10 9 7 32 32 H 1.08992 * 111.03664 * 206.47374 * 11 10 9 33 33 H 1.08997 * 111.03175 * 82.53847 * 11 10 9 34 34 H 1.08997 * 111.03745 * 205.29518 * 13 12 11 35 35 H 1.09010 * 111.03185 * 329.18519 * 13 12 11 36 36 H 1.08998 * 110.48939 * 276.93917 * 14 13 12 37 37 H 1.09000 * 110.30662 * 154.62039 * 14 13 12 38 38 H 1.08997 * 110.33989 * 224.35821 * 24 23 22 39 39 H 1.08997 * 110.34028 * 102.10311 * 24 23 22 40 40 H 1.09003 * 110.93211 * 267.30952 * 25 24 23 41 41 H 1.09001 * 110.92892 * 143.65358 * 25 24 23 42 42 H 1.08999 * 110.32504 * 315.70654 * 26 22 20 43 43 H 1.08998 * 110.32700 * 77.82032 * 26 22 20 44 44 H 1.08997 * 109.98867 * 121.71803 * 27 15 14 45 45 H 1.08998 * 109.98578 * 242.98622 * 27 15 14 46 46 H 1.09002 * 109.98799 * 58.56753 * 28 9 7 47 47 H 1.09008 * 109.98529 * 297.26348 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1429 -2.5340 -0.0008 11 6 -0.4078 -3.9378 0.6052 12 6 0.7833 -4.7368 0.0539 13 6 1.1144 -5.9404 0.9500 14 6 0.1664 -7.0250 0.3664 15 7 0.1369 -6.7612 -1.0852 16 6 -0.1581 -7.6632 -2.0422 17 8 -0.1570 -7.3311 -3.2116 18 6 -0.4826 -9.0554 -1.6700 19 7 -0.5215 -9.5537 -0.4500 20 7 -0.8377 -10.7981 -0.4922 21 1 -0.9311 -11.3733 0.2832 22 6 -1.0276 -11.1892 -1.7730 23 6 -0.8109 -10.1089 -2.5538 24 6 -1.0027 -10.4607 -4.0092 25 6 -0.9497 -12.0042 -4.0569 26 6 -1.3898 -12.3845 -2.6258 27 6 0.4776 -5.3454 -1.3140 28 6 1.9327 -3.7313 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6008 -1.7619 0.6175 31 1 -0.5278 -2.4806 -1.0191 32 1 -1.3526 -4.3466 0.2471 33 1 -0.3857 -3.9041 1.6945 34 1 2.1597 -6.2309 0.8445 35 1 0.8721 -5.7307 1.9919 36 1 -0.8331 -6.9259 0.7898 37 1 0.5646 -8.0205 0.5623 38 1 -0.1996 -10.0352 -4.6108 39 1 -1.9707 -10.1038 -4.3609 40 1 0.0632 -12.3531 -4.2582 41 1 -1.6487 -12.3952 -4.7962 42 1 -0.8507 -13.2690 -2.2865 43 1 -2.4648 -12.5612 -2.5930 44 1 1.3536 -5.2725 -1.9584 45 1 -0.3657 -4.8287 -1.7722 46 1 2.5729 -3.8508 0.8746 47 1 2.5138 -3.8775 -0.9101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041434783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:22 Heat of formation + Delta-G solvation = 86.745532 kcal Electronic energy + Delta-G solvation = -28450.284852 eV Core-core repulsion = 24635.767401 eV Total energy + Delta-G solvation = -3814.517452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.10586 -40.03394 -38.14690 -37.12185 -35.56118 -32.79330 -32.00200 -30.43924 -29.12822 -28.97508 -28.34718 -27.80997 -25.93661 -24.41861 -22.94985 -22.27357 -21.93213 -20.32590 -20.16703 -19.01521 -18.64709 -17.83230 -16.91934 -16.55759 -16.35572 -15.68110 -15.31992 -14.86224 -14.78593 -14.26910 -13.82777 -13.77405 -13.63096 -13.24169 -13.14427 -12.91364 -12.66544 -12.47728 -12.06809 -11.92698 -11.86886 -11.65195 -11.51226 -11.49347 -11.29733 -11.15805 -10.91522 -10.74009 -10.72679 -10.19687 -10.07422 -9.95120 -9.81203 -9.68485 -9.53283 -9.42418 -8.87486 -8.59739 -8.40336 -6.78252 -5.60139 -3.01466 1.43218 1.86756 2.37742 3.09123 3.43845 3.44235 3.48303 3.49690 3.92584 4.26254 4.33626 4.53345 4.62133 4.73657 4.83280 4.85726 5.05029 5.10362 5.17450 5.34447 5.39509 5.47782 5.50604 5.54513 5.56077 5.64734 5.78640 5.86380 5.89873 5.91917 5.97243 6.07164 6.13943 6.17738 6.23214 6.33457 6.37841 6.45398 6.60998 6.67572 6.77800 6.82348 6.89910 7.56383 7.57600 7.66948 7.70362 7.90639 8.29297 8.40758 9.26908 9.87637 10.53266 11.43837 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.002412 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.199320 B =11605.299820 C =12011.733730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.119 4.119 14 C 0.105 3.895 15 N -0.604 5.604 16 C 0.610 3.390 17 O -0.533 6.533 18 C 0.019 3.981 19 N -0.248 5.248 20 N -0.367 5.367 21 H 0.443 0.557 22 C -0.025 4.025 23 C -0.160 4.160 24 C -0.048 4.048 25 C -0.116 4.116 26 C -0.035 4.035 27 C 0.129 3.871 28 C 0.151 3.849 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.012 0.988 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.030 0.970 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -27.946 -0.872 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.169 4.169 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.018 4.018 15 N -0.337 5.337 16 C 0.396 3.604 17 O -0.408 6.408 18 C -0.141 4.141 19 N -0.083 5.083 20 N -0.079 5.079 21 H 0.287 0.713 22 C -0.151 4.151 23 C -0.170 4.170 24 C -0.087 4.087 25 C -0.154 4.154 26 C -0.074 4.074 27 C 0.008 3.992 28 C 0.025 3.975 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.775 -27.228 -0.480 27.493 hybrid contribution 0.282 0.355 -0.171 0.484 sum -3.493 -26.874 -0.651 27.107 Atomic orbital electron populations 1.69796 1.04871 1.24820 1.57659 1.24783 0.95722 0.97679 1.02556 0.86153 0.78381 0.83109 0.77854 1.21245 1.21625 1.21217 1.19030 0.90460 0.82473 1.42990 0.90560 1.44624 1.01901 0.99623 1.86899 1.21990 0.84584 0.92361 0.98259 1.22906 0.95174 0.98753 1.00085 1.21540 0.98533 0.94694 0.93447 1.22723 0.99299 0.94157 0.99524 1.22579 0.99972 0.99837 0.79412 1.48508 1.67288 1.10713 1.07175 1.16520 0.77456 0.82012 0.84413 1.90798 1.53334 1.79042 1.17610 1.21338 1.08655 0.95250 0.88907 1.73846 1.18633 0.93044 1.22808 1.42685 1.50636 1.07539 1.07057 0.71335 1.22182 1.07347 1.00394 0.85226 1.20854 1.06794 0.91887 0.97460 1.20417 1.03073 0.94515 0.90653 1.22441 1.02382 0.95487 0.95046 1.20625 1.01766 0.92627 0.92427 1.21894 1.01209 0.78874 0.97226 1.21094 0.92802 0.85427 0.98169 0.93730 0.87707 0.96983 0.92323 0.91726 0.90802 0.89714 0.91450 0.89421 0.90082 0.90125 0.90481 0.89742 0.90465 0.89580 0.91050 0.90802 0.95257 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 10.09 55.49 0.56 -26.71 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.65 3.41 -170.41 -0.58 -16.23 16 10 C 0.15 3.76 5.85 -2.31 -0.01 3.74 16 11 C -0.13 -2.48 5.85 -25.24 -0.15 -2.63 16 12 C -0.08 -1.43 0.61 -154.02 -0.09 -1.52 16 13 C -0.12 -1.66 5.94 -25.10 -0.15 -1.81 16 14 C 0.10 1.42 6.11 -2.17 -0.01 1.40 16 15 N -0.60 -9.84 3.34 -171.86 -0.57 -10.42 16 16 C 0.61 10.50 7.86 -12.39 -0.10 10.40 16 17 O -0.53 -10.68 17.26 5.30 0.09 -10.59 16 18 C 0.02 0.27 6.97 -82.80 -0.58 -0.31 16 19 N -0.25 -2.97 9.36 33.40 0.31 -2.66 16 20 N -0.37 -3.14 6.84 33.61 0.23 -2.91 16 21 H 0.44 2.00 8.96 -190.45 -1.71 0.29 16 22 C -0.02 -0.22 8.12 -81.96 -0.67 -0.89 16 23 C -0.16 -1.94 6.82 -104.44 -0.71 -2.65 16 24 C -0.05 -0.46 6.78 -26.96 -0.18 -0.65 16 25 C -0.12 -0.66 7.13 -25.16 -0.18 -0.84 16 26 C -0.04 -0.19 6.78 -26.85 -0.18 -0.37 16 27 C 0.13 2.33 6.02 -3.65 -0.02 2.31 16 28 C 0.15 3.18 6.51 -3.65 -0.02 3.16 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 30 H 0.11 2.89 5.89 -51.93 -0.31 2.59 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.06 1.18 7.82 -51.93 -0.41 0.78 16 34 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.08 1.09 7.78 -51.92 -0.40 0.68 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.10 6.20 -51.93 -0.32 0.77 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 45 H 0.07 1.44 7.78 -51.93 -0.40 1.04 16 46 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 47 H 0.02 0.51 7.41 -51.92 -0.38 0.13 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -34.60 368.74 -11.23 -45.82 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.49 Total: -1.75 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.31 Total: 2.51 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.05 Total: -58.93 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.60 -11.23 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041434783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.570 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds