Wall clock time and date at job start Tue Mar 31 2020 04:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47215 * 239.99449 * 3 2 1 5 5 H 1.48499 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47259 * 119.99753 * 3 2 1 7 7 C 1.38817 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99729 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67400 * 0.03914 * 9 7 2 11 11 C 1.55180 * 105.00903 * 203.82728 * 10 9 7 12 12 C 1.53659 * 101.41527 * 324.50932 * 11 10 9 13 13 C 1.53662 * 111.41339 * 155.02636 * 12 11 10 14 14 C 1.55426 * 101.31221 * 87.05958 * 13 12 11 15 15 N 1.47562 * 104.88045 * 35.82796 * 14 13 12 16 16 C 1.34782 * 125.67443 * 156.03015 * 15 14 13 17 17 O 1.21572 * 119.99998 * 179.69632 * 16 15 14 18 18 C 1.47710 * 119.99727 * 359.69466 * 16 15 14 19 19 N 1.31839 * 126.57536 * 359.97438 * 18 16 15 20 20 N 1.28465 * 110.06090 * 180.02562 * 19 18 16 21 21 H 0.96997 * 124.88239 * 180.25638 * 20 19 18 22 22 C 1.35255 * 110.22855 * 359.97438 * 20 19 18 23 23 C 1.35042 * 107.07739 * 0.02562 * 22 20 19 24 24 C 1.50953 * 110.52619 * 179.97438 * 23 22 20 25 25 C 1.54515 * 104.96400 * 343.23321 * 24 23 22 26 26 C 1.51232 * 142.76421 * 180.02562 * 22 20 19 27 27 C 1.47402 * 108.65272 * 335.77168 * 15 14 13 28 28 C 1.47399 * 125.67496 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.33608 * 322.71245 * 10 9 7 31 31 H 1.08997 * 110.33120 * 84.84265 * 10 9 7 32 32 H 1.08992 * 111.03664 * 206.47374 * 11 10 9 33 33 H 1.08997 * 111.03175 * 82.53847 * 11 10 9 34 34 H 1.08997 * 111.03745 * 205.29518 * 13 12 11 35 35 H 1.09010 * 111.03185 * 329.18519 * 13 12 11 36 36 H 1.08998 * 110.48939 * 276.93917 * 14 13 12 37 37 H 1.09000 * 110.30662 * 154.62039 * 14 13 12 38 38 H 1.08997 * 110.33989 * 224.35821 * 24 23 22 39 39 H 1.08997 * 110.34028 * 102.10311 * 24 23 22 40 40 H 1.09003 * 110.93211 * 267.30952 * 25 24 23 41 41 H 1.09001 * 110.92892 * 143.65358 * 25 24 23 42 42 H 1.08999 * 110.32504 * 315.70654 * 26 22 20 43 43 H 1.08998 * 110.32700 * 77.82032 * 26 22 20 44 44 H 1.08997 * 109.98867 * 121.71803 * 27 15 14 45 45 H 1.08998 * 109.98578 * 242.98622 * 27 15 14 46 46 H 1.09002 * 109.98799 * 58.56753 * 28 9 7 47 47 H 1.09008 * 109.98529 * 297.26348 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1429 -2.5340 -0.0008 11 6 -0.4078 -3.9378 0.6052 12 6 0.7833 -4.7368 0.0539 13 6 1.1144 -5.9404 0.9500 14 6 0.1664 -7.0250 0.3664 15 7 0.1369 -6.7612 -1.0852 16 6 -0.1581 -7.6632 -2.0422 17 8 -0.1570 -7.3311 -3.2116 18 6 -0.4826 -9.0554 -1.6700 19 7 -0.5215 -9.5537 -0.4500 20 7 -0.8377 -10.7981 -0.4922 21 1 -0.9311 -11.3733 0.2832 22 6 -1.0276 -11.1892 -1.7730 23 6 -0.8109 -10.1089 -2.5538 24 6 -1.0027 -10.4607 -4.0092 25 6 -0.9497 -12.0042 -4.0569 26 6 -1.3898 -12.3845 -2.6258 27 6 0.4776 -5.3454 -1.3140 28 6 1.9327 -3.7313 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6008 -1.7619 0.6175 31 1 -0.5278 -2.4806 -1.0191 32 1 -1.3526 -4.3466 0.2471 33 1 -0.3857 -3.9041 1.6945 34 1 2.1597 -6.2309 0.8445 35 1 0.8721 -5.7307 1.9919 36 1 -0.8331 -6.9259 0.7898 37 1 0.5646 -8.0205 0.5623 38 1 -0.1996 -10.0352 -4.6108 39 1 -1.9707 -10.1038 -4.3609 40 1 0.0632 -12.3531 -4.2582 41 1 -1.6487 -12.3952 -4.7962 42 1 -0.8507 -13.2690 -2.2865 43 1 -2.4648 -12.5612 -2.5930 44 1 1.3536 -5.2725 -1.9584 45 1 -0.3657 -4.8287 -1.7722 46 1 2.5729 -3.8508 0.8746 47 1 2.5138 -3.8775 -0.9101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041434783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:20 Heat of formation + Delta-G solvation = 64.175058 kcal Electronic energy + Delta-G solvation = -28451.263582 eV Core-core repulsion = 24635.767401 eV Total energy + Delta-G solvation = -3815.496181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.91948 -41.43674 -39.63082 -37.76407 -37.18336 -34.55602 -33.09535 -32.01763 -30.70062 -29.93079 -29.67457 -28.54877 -27.53354 -26.11004 -24.28586 -23.48362 -22.53624 -22.20025 -21.04401 -20.31086 -20.00248 -18.83409 -18.58329 -17.65462 -17.37264 -16.84998 -16.84475 -16.53675 -15.97762 -15.61641 -15.57429 -15.04728 -14.62121 -14.37212 -14.20388 -13.93199 -13.77272 -13.69297 -13.63928 -13.46062 -13.18455 -12.92616 -12.84479 -12.81917 -12.65074 -12.45665 -12.05826 -12.03570 -12.02052 -11.84316 -11.67687 -11.57251 -11.46695 -11.24764 -11.13582 -10.72437 -10.42845 -9.76859 -9.58923 -8.88491 -7.76421 -5.20809 0.42071 1.05595 1.46278 1.50051 1.56239 1.61707 1.95280 2.23961 2.50382 3.10137 3.30900 3.46581 3.53775 3.61395 3.62537 3.71226 3.78462 4.05612 4.20659 4.22524 4.25412 4.29317 4.39183 4.58144 4.65143 4.66960 4.72481 4.77165 4.80646 4.84816 4.90679 4.96539 4.99986 5.01845 5.04925 5.08096 5.18089 5.22385 5.27907 5.33292 5.37781 5.39411 5.47014 5.62352 5.82062 6.12608 6.30761 6.39753 6.75012 7.02782 7.11013 7.78211 8.43050 9.25614 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.002412 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.199320 B =11605.299820 C =12011.733730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.156 3.844 11 C -0.111 4.111 12 C -0.070 4.070 13 C -0.107 4.107 14 C 0.110 3.890 15 N -0.604 5.604 16 C 0.603 3.397 17 O -0.577 6.577 18 C -0.017 4.017 19 N -0.250 5.250 20 N -0.345 5.345 21 H 0.463 0.537 22 C 0.000 4.000 23 C -0.199 4.199 24 C -0.055 4.055 25 C -0.106 4.106 26 C -0.030 4.030 27 C 0.135 3.865 28 C 0.148 3.852 29 H 0.247 0.753 30 H 0.074 0.926 31 H -0.023 1.023 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -31.598 0.868 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.031 3.969 11 C -0.150 4.150 12 C -0.071 4.071 13 C -0.145 4.145 14 C -0.011 4.011 15 N -0.337 5.337 16 C 0.392 3.608 17 O -0.456 6.456 18 C -0.175 4.175 19 N -0.087 5.087 20 N -0.061 5.061 21 H 0.311 0.689 22 C -0.128 4.128 23 C -0.210 4.210 24 C -0.094 4.094 25 C -0.144 4.144 26 C -0.069 4.069 27 C 0.012 3.988 28 C 0.023 3.977 29 H 0.056 0.944 30 H 0.092 0.908 31 H -0.005 1.005 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.541 -30.928 1.309 31.157 hybrid contribution 0.211 1.431 -0.756 1.632 sum -3.330 -29.497 0.553 29.690 Atomic orbital electron populations 1.70061 1.06259 1.25055 1.58657 1.25658 0.96651 1.01058 1.02809 0.85103 0.77079 0.78656 0.78192 1.20758 1.22004 1.19900 1.19436 0.91049 0.83759 1.42484 0.90055 1.44932 1.02594 1.00872 1.86798 1.21756 0.84110 0.94981 0.96068 1.22718 0.96399 0.95179 1.00671 1.21376 0.96495 0.95207 0.94053 1.22739 1.00223 0.91733 0.99778 1.22712 1.00541 1.00519 0.77361 1.48572 1.66955 1.09626 1.08515 1.17043 0.76585 0.83302 0.83917 1.90753 1.55277 1.80124 1.19416 1.21025 1.11636 0.94203 0.90667 1.73705 1.18876 0.94492 1.21663 1.42778 1.48495 1.06729 1.08068 0.68871 1.22747 1.04671 1.00743 0.84673 1.21270 1.08188 0.92376 0.99127 1.20533 1.01857 0.97676 0.89317 1.22465 1.03564 0.91975 0.96369 1.20833 1.03471 0.91810 0.90754 1.21646 0.99577 0.80327 0.97251 1.21267 0.94028 0.84136 0.98292 0.94383 0.90849 1.00482 0.90992 0.90006 0.89585 0.87373 0.90483 0.87740 0.92416 0.90691 0.89956 0.87379 0.87446 0.87413 0.92590 0.93292 0.93707 0.96485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 10.09 21.65 0.22 -58.08 16 2 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.24 -13.73 10.28 84.03 0.86 -12.87 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -33.26 3.41 -693.06 -2.36 -35.62 16 10 C 0.16 7.99 5.85 86.92 0.51 8.50 16 11 C -0.11 -4.21 5.85 31.56 0.18 -4.02 16 12 C -0.07 -2.44 0.61 -51.86 -0.03 -2.47 16 13 C -0.11 -2.70 5.94 31.65 0.19 -2.51 16 14 C 0.11 2.75 6.11 87.01 0.53 3.28 16 15 N -0.60 -19.86 3.34 -815.92 -2.73 -22.58 16 16 C 0.60 21.51 7.86 86.75 0.68 22.19 16 17 O -0.58 -24.75 17.26 -3.94 -0.07 -24.82 16 18 C -0.02 -0.49 6.97 42.42 0.30 -0.19 16 19 N -0.25 -5.48 9.36 -48.24 -0.45 -5.93 16 20 N -0.35 -4.80 6.84 -47.57 -0.33 -5.12 16 21 H 0.46 2.28 8.96 -220.00 -1.97 0.31 16 22 C 0.00 -0.01 8.12 41.46 0.34 0.33 16 23 C -0.20 -4.69 6.82 -19.75 -0.13 -4.82 16 24 C -0.06 -1.06 6.78 30.44 0.21 -0.85 16 25 C -0.11 -0.92 7.13 31.61 0.23 -0.69 16 26 C -0.03 -0.19 6.78 30.52 0.21 0.02 16 27 C 0.13 5.02 6.02 86.14 0.52 5.54 16 28 C 0.15 6.24 6.51 86.14 0.56 6.80 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.07 4.24 5.89 -2.39 -0.01 4.23 16 31 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 32 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 33 H 0.08 2.84 7.82 -2.39 -0.02 2.82 16 34 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 35 H 0.11 2.32 7.78 -2.38 -0.02 2.30 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.32 6.20 -2.39 -0.01 2.30 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 2.23 7.44 -2.39 -0.02 2.21 16 45 H 0.05 2.05 7.78 -2.39 -0.02 2.03 16 46 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 47 H 0.02 0.75 7.41 -2.38 -0.02 0.73 16 Total: -1.00 -80.75 368.74 0.94 -79.81 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.98 Total: 8.84 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.61 Total: 14.66 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.65 Total: -127.35 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.82 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -80.75 0.94 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041434783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.984 kcal (2) G-P(sol) polarization free energy of solvation -80.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds