Wall clock time and date at job start Tue Mar 31 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46722 * 270.00177 * 3 2 1 5 5 H 1.48497 * 109.47157 * 29.99867 * 3 2 1 6 6 H 1.48494 * 109.47346 * 150.00030 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47135 * 125.60369 * 0.02562 * 9 7 2 11 11 C 1.54585 * 107.32400 * 180.91585 * 10 9 7 12 12 C 1.53716 * 102.78206 * 20.89322 * 11 10 9 13 13 C 1.53232 * 111.52038 * 86.20467 * 12 11 10 14 14 C 1.55258 * 102.46444 * 101.30062 * 13 12 11 15 15 N 1.48252 * 103.44533 * 36.19500 * 14 13 12 16 16 C 1.34780 * 126.99993 * 141.54334 * 15 14 13 17 17 O 1.21276 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00020 * 0.02562 * 16 15 14 19 19 C 1.52992 * 109.47176 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47176 * 179.97438 * 19 18 16 21 21 N 1.31794 * 119.12352 * 269.73007 * 20 19 18 22 22 C 1.32330 * 120.81973 * 179.76505 * 21 20 19 23 23 C 1.38601 * 119.10439 * 0.49533 * 22 21 20 24 24 C 1.38595 * 118.39847 * 359.75848 * 23 22 21 25 25 N 1.31795 * 119.12470 * 89.99987 * 20 19 18 26 26 C 1.47880 * 105.99794 * 321.55197 * 15 14 13 27 27 C 1.47699 * 125.60666 * 179.71864 * 9 7 2 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.87293 * 300.34994 * 10 9 7 30 30 H 1.08998 * 109.87060 * 61.34098 * 10 9 7 31 31 H 1.09001 * 110.74417 * 139.21537 * 11 10 9 32 32 H 1.08998 * 110.75035 * 262.56803 * 11 10 9 33 33 H 1.09001 * 110.80811 * 219.54437 * 13 12 11 34 34 H 1.09006 * 110.80916 * 343.05265 * 13 12 11 35 35 H 1.09004 * 110.62233 * 277.71430 * 14 13 12 36 36 H 1.08992 * 110.76674 * 154.75165 * 14 13 12 37 37 H 1.08999 * 109.46792 * 299.99942 * 18 16 15 38 38 H 1.09000 * 109.46950 * 59.99407 * 18 16 15 39 39 H 1.09000 * 109.47070 * 299.99754 * 19 18 16 40 40 H 1.09000 * 109.47305 * 60.00065 * 19 18 16 41 41 H 1.08003 * 120.45122 * 180.23440 * 22 21 20 42 42 H 1.07998 * 120.79777 * 179.77514 * 23 22 21 43 43 H 1.07998 * 120.44846 * 180.02562 * 24 23 22 44 44 H 1.09002 * 110.04433 * 265.87305 * 26 15 14 45 45 H 1.08998 * 110.09490 * 144.42907 * 26 15 14 46 46 H 1.09001 * 110.39332 * 276.21002 * 27 9 7 47 47 H 1.08993 * 110.39685 * 38.59938 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5319 -0.0005 11 6 -0.4526 -4.0453 0.0235 12 6 0.8484 -4.6539 0.5712 13 6 0.8621 -4.6654 2.1034 14 6 0.5060 -6.1408 2.4306 15 7 1.1845 -6.9054 1.3568 16 6 1.8132 -8.0913 1.4787 17 8 2.3291 -8.6065 0.5096 18 6 1.8751 -8.7771 2.8192 19 6 2.6382 -10.0961 2.6826 20 6 2.7007 -10.7816 4.0232 21 7 3.7162 -10.5310 4.8251 22 6 3.8022 -11.1107 6.0116 23 6 2.8119 -11.9985 6.4016 24 6 1.7626 -12.2403 5.5290 25 7 1.7411 -11.6197 4.3604 26 6 1.0311 -6.1019 0.1249 27 6 1.9357 -3.7332 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 -0.5587 -2.0522 0.8835 30 1 -0.5547 -2.0792 -0.9006 31 1 -1.2883 -4.2557 0.6909 32 1 -0.6578 -4.4132 -0.9818 33 1 1.8518 -4.4125 2.4837 34 1 0.1078 -3.9873 2.5025 35 1 -0.5724 -6.2939 2.3882 36 1 0.8948 -6.4245 3.4084 37 1 2.3875 -8.1328 3.5336 38 1 0.8634 -8.9779 3.1717 39 1 2.1254 -10.7402 1.9683 40 1 3.6500 -9.8956 2.3300 41 1 4.6351 -10.8981 6.6655 42 1 2.8567 -12.4897 7.3623 43 1 0.9729 -12.9256 5.7994 44 1 0.1550 -6.4347 -0.4316 45 1 1.9233 -6.1921 -0.4946 46 1 2.1893 -4.0312 -1.0222 47 1 2.8222 -3.7508 0.6291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041747375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:52 Heat of formation + Delta-G solvation = 43.536073 kcal Electronic energy + Delta-G solvation = -27632.924965 eV Core-core repulsion = 23816.533811 eV Total energy + Delta-G solvation = -3816.391155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.41865 -40.21253 -38.50233 -35.68665 -34.52341 -34.08841 -32.68366 -31.29100 -30.23405 -29.20066 -28.55905 -26.50347 -25.10944 -24.93834 -23.63364 -22.72958 -22.22082 -20.21502 -19.20981 -18.68147 -17.93712 -17.59646 -16.90402 -16.63158 -16.01783 -15.75290 -15.50191 -15.05379 -14.71142 -14.57312 -14.03770 -13.90629 -13.85822 -13.65545 -13.31369 -12.80939 -12.73709 -12.56453 -12.41675 -12.05382 -11.93694 -11.48188 -11.37723 -11.26235 -11.22432 -11.20033 -11.09940 -10.87420 -10.77008 -10.18224 -10.03800 -10.00308 -9.88397 -9.81528 -9.68300 -9.61598 -9.60005 -8.61361 -8.57304 -6.81169 -5.70064 -3.02973 0.46425 0.68833 2.66262 2.92730 3.37532 3.40832 3.46101 3.47601 3.56609 3.77579 4.18070 4.41978 4.50812 4.60446 4.67088 4.76661 4.81123 4.86436 4.93872 5.01969 5.12753 5.28541 5.30087 5.35461 5.46033 5.49678 5.60944 5.71810 5.77306 5.80718 5.86350 5.98913 6.03188 6.05531 6.10363 6.26097 6.36848 6.43501 6.53487 6.58715 6.60272 6.76901 6.86112 7.57289 7.60633 7.63233 7.71963 7.83756 8.18330 8.26922 9.23671 9.83624 10.49892 11.41597 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002123 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.261933 B =13186.068370 C =13596.972654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.132 4.132 12 C -0.086 4.086 13 C -0.107 4.107 14 C 0.097 3.903 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.545 6.545 18 C -0.126 4.126 19 C -0.037 4.037 20 C 0.324 3.676 21 N -0.514 5.514 22 C 0.150 3.850 23 C -0.237 4.237 24 C 0.149 3.851 25 N -0.516 5.516 26 C 0.123 3.877 27 C 0.150 3.850 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.020 0.980 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -23.339 13.580 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.087 4.087 13 C -0.145 4.145 14 C -0.026 4.026 15 N -0.353 5.353 16 C 0.323 3.677 17 O -0.423 6.423 18 C -0.167 4.167 19 C -0.077 4.077 20 C 0.057 3.943 21 N -0.228 5.228 22 C -0.016 4.016 23 C -0.258 4.258 24 C -0.017 4.017 25 N -0.230 5.230 26 C 0.000 4.000 27 C 0.024 3.976 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.186 0.814 42 H 0.165 0.835 43 H 0.186 0.814 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.038 0.962 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.190 -23.027 12.189 26.081 hybrid contribution 0.385 0.500 1.062 1.235 sum 1.576 -22.527 13.250 26.182 Atomic orbital electron populations 1.69959 1.04833 1.24942 1.57340 1.24785 0.95722 0.97606 1.02432 0.86129 0.78571 0.83570 0.77562 1.21659 1.21734 1.20741 1.19055 0.90420 0.82424 1.43446 0.90532 1.44551 1.01620 0.99733 1.87196 1.21192 0.84284 0.87997 1.01043 1.22826 0.94980 0.99641 0.99588 1.21651 0.98750 0.92874 0.95463 1.22466 1.03044 0.94082 0.94951 1.22736 0.97169 0.92034 0.90615 1.48980 1.54503 1.19867 1.11958 1.20034 0.77503 0.79671 0.90492 1.90708 1.46657 1.64436 1.40459 1.21498 1.02775 0.96352 0.96041 1.20149 1.03528 0.94668 0.89319 1.23264 0.85083 0.90038 0.95947 1.68325 1.24781 1.24976 1.04734 1.23305 0.96846 0.89537 0.91934 1.22934 0.97637 1.02235 1.03042 1.23287 0.96081 0.94099 0.88235 1.68315 1.27501 1.08673 1.18466 1.21944 1.02021 0.89273 0.86740 1.21450 0.93525 0.85815 0.96831 0.93823 0.93594 0.93999 0.91961 0.92239 0.90696 0.89531 0.90877 0.90610 0.88569 0.88689 0.88230 0.88161 0.81397 0.83467 0.81437 0.91467 0.90391 0.96193 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.30 55.49 0.57 -26.28 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.14 3.41 -170.37 -0.58 -15.72 16 10 C 0.18 4.21 5.33 -2.86 -0.02 4.20 16 11 C -0.13 -2.32 5.65 -25.53 -0.14 -2.47 16 12 C -0.09 -1.42 0.75 -153.86 -0.12 -1.53 16 13 C -0.11 -1.57 6.12 -25.42 -0.16 -1.72 16 14 C 0.10 1.12 6.96 -1.88 -0.01 1.10 16 15 N -0.62 -8.45 3.31 -169.98 -0.56 -9.01 16 16 C 0.53 7.42 7.89 -10.98 -0.09 7.34 16 17 O -0.54 -9.40 16.33 5.56 0.09 -9.31 16 18 C -0.13 -1.31 4.62 -27.89 -0.13 -1.44 16 19 C -0.04 -0.40 4.94 -27.89 -0.14 -0.54 16 20 C 0.32 3.42 6.90 -157.19 -1.08 2.33 16 21 N -0.51 -5.24 10.33 -10.72 -0.11 -5.35 16 22 C 0.15 1.04 11.30 -17.20 -0.19 0.85 16 23 C -0.24 -1.27 10.17 -39.32 -0.40 -1.67 16 24 C 0.15 1.01 11.30 -17.20 -0.19 0.81 16 25 N -0.52 -5.13 10.33 -10.73 -0.11 -5.24 16 26 C 0.12 1.85 6.31 -3.48 -0.02 1.83 16 27 C 0.15 3.08 6.10 -3.03 -0.02 3.06 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 30 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 31 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 33 H 0.07 1.15 7.66 -51.93 -0.40 0.76 16 34 H 0.09 1.31 7.80 -51.93 -0.40 0.91 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.71 7.24 -51.93 -0.38 0.33 16 37 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.07 0.97 7.63 -51.93 -0.40 0.57 16 45 H 0.08 1.27 7.54 -51.93 -0.39 0.88 16 46 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 47 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -34.07 379.91 -10.25 -44.31 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.28 Total: -1.62 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.96 Total: 5.40 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.79 Total: -61.59 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.07 -10.25 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041747375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.849 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds