Wall clock time and date at job start Tue Mar 31 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46722 * 270.00177 * 3 2 1 5 5 H 1.48497 * 109.47157 * 29.99867 * 3 2 1 6 6 H 1.48494 * 109.47346 * 150.00030 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47135 * 125.60369 * 0.02562 * 9 7 2 11 11 C 1.54585 * 107.32400 * 180.91585 * 10 9 7 12 12 C 1.53716 * 102.78206 * 20.89322 * 11 10 9 13 13 C 1.53232 * 111.52038 * 86.20467 * 12 11 10 14 14 C 1.55258 * 102.46444 * 101.30062 * 13 12 11 15 15 N 1.48252 * 103.44533 * 36.19500 * 14 13 12 16 16 C 1.34780 * 126.99993 * 141.54334 * 15 14 13 17 17 O 1.21276 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00020 * 0.02562 * 16 15 14 19 19 C 1.52992 * 109.47176 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47176 * 179.97438 * 19 18 16 21 21 N 1.31794 * 119.12352 * 269.73007 * 20 19 18 22 22 C 1.32330 * 120.81973 * 179.76505 * 21 20 19 23 23 C 1.38601 * 119.10439 * 0.49533 * 22 21 20 24 24 C 1.38595 * 118.39847 * 359.75848 * 23 22 21 25 25 N 1.31795 * 119.12470 * 89.99987 * 20 19 18 26 26 C 1.47880 * 105.99794 * 321.55197 * 15 14 13 27 27 C 1.47699 * 125.60666 * 179.71864 * 9 7 2 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.87293 * 300.34994 * 10 9 7 30 30 H 1.08998 * 109.87060 * 61.34098 * 10 9 7 31 31 H 1.09001 * 110.74417 * 139.21537 * 11 10 9 32 32 H 1.08998 * 110.75035 * 262.56803 * 11 10 9 33 33 H 1.09001 * 110.80811 * 219.54437 * 13 12 11 34 34 H 1.09006 * 110.80916 * 343.05265 * 13 12 11 35 35 H 1.09004 * 110.62233 * 277.71430 * 14 13 12 36 36 H 1.08992 * 110.76674 * 154.75165 * 14 13 12 37 37 H 1.08999 * 109.46792 * 299.99942 * 18 16 15 38 38 H 1.09000 * 109.46950 * 59.99407 * 18 16 15 39 39 H 1.09000 * 109.47070 * 299.99754 * 19 18 16 40 40 H 1.09000 * 109.47305 * 60.00065 * 19 18 16 41 41 H 1.08003 * 120.45122 * 180.23440 * 22 21 20 42 42 H 1.07998 * 120.79777 * 179.77514 * 23 22 21 43 43 H 1.07998 * 120.44846 * 180.02562 * 24 23 22 44 44 H 1.09002 * 110.04433 * 265.87305 * 26 15 14 45 45 H 1.08998 * 110.09490 * 144.42907 * 26 15 14 46 46 H 1.09001 * 110.39332 * 276.21002 * 27 9 7 47 47 H 1.08993 * 110.39685 * 38.59938 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5319 -0.0005 11 6 -0.4526 -4.0453 0.0235 12 6 0.8484 -4.6539 0.5712 13 6 0.8621 -4.6654 2.1034 14 6 0.5060 -6.1408 2.4306 15 7 1.1845 -6.9054 1.3568 16 6 1.8132 -8.0913 1.4787 17 8 2.3291 -8.6065 0.5096 18 6 1.8751 -8.7771 2.8192 19 6 2.6382 -10.0961 2.6826 20 6 2.7007 -10.7816 4.0232 21 7 3.7162 -10.5310 4.8251 22 6 3.8022 -11.1107 6.0116 23 6 2.8119 -11.9985 6.4016 24 6 1.7626 -12.2403 5.5290 25 7 1.7411 -11.6197 4.3604 26 6 1.0311 -6.1019 0.1249 27 6 1.9357 -3.7332 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 -0.5587 -2.0522 0.8835 30 1 -0.5547 -2.0792 -0.9006 31 1 -1.2883 -4.2557 0.6909 32 1 -0.6578 -4.4132 -0.9818 33 1 1.8518 -4.4125 2.4837 34 1 0.1078 -3.9873 2.5025 35 1 -0.5724 -6.2939 2.3882 36 1 0.8948 -6.4245 3.4084 37 1 2.3875 -8.1328 3.5336 38 1 0.8634 -8.9779 3.1717 39 1 2.1254 -10.7402 1.9683 40 1 3.6500 -9.8956 2.3300 41 1 4.6351 -10.8981 6.6655 42 1 2.8567 -12.4897 7.3623 43 1 0.9729 -12.9256 5.7994 44 1 0.1550 -6.4347 -0.4316 45 1 1.9233 -6.1921 -0.4946 46 1 2.1893 -4.0312 -1.0222 47 1 2.8222 -3.7508 0.6291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041747375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:51 Heat of formation + Delta-G solvation = 21.946801 kcal Electronic energy + Delta-G solvation = -27633.861147 eV Core-core repulsion = 23816.533811 eV Total energy + Delta-G solvation = -3817.327336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00123 -41.41574 -39.82460 -37.19855 -35.27245 -34.66106 -34.47022 -32.28723 -31.59344 -30.58426 -30.06318 -27.77193 -26.58644 -25.44847 -24.94096 -23.99019 -22.97891 -22.08589 -20.33209 -20.02421 -18.80960 -18.52804 -18.36011 -17.45381 -17.14050 -16.73552 -16.65014 -16.06213 -15.97154 -15.67277 -15.58124 -15.38326 -14.76771 -14.46894 -14.35828 -14.18657 -13.85372 -13.80906 -13.76641 -13.42265 -13.15458 -12.97966 -12.93143 -12.59731 -12.53948 -12.47328 -12.19372 -12.01687 -11.84880 -11.82881 -11.77998 -11.52145 -11.35004 -11.26864 -10.96255 -10.68660 -10.42012 -10.19353 -9.72321 -8.87398 -7.83917 -5.18650 -0.07292 0.18555 1.45663 1.47209 1.55810 1.59484 1.90606 2.49753 2.79483 2.90682 3.26916 3.32345 3.43751 3.56981 3.64978 3.74253 3.80038 3.91184 4.03338 4.09724 4.20383 4.25380 4.26616 4.28391 4.41768 4.46703 4.59559 4.64515 4.67456 4.74006 4.78562 4.80145 4.91193 4.92498 4.99867 5.01970 5.03589 5.10052 5.19430 5.35034 5.41590 5.46553 5.49124 5.71451 5.81496 6.09337 6.21444 6.54430 7.10428 7.12454 7.14312 7.78715 8.43358 9.26031 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002123 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.261933 B =13186.068370 C =13596.972654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.188 3.812 11 C -0.115 4.115 12 C -0.073 4.073 13 C -0.107 4.107 14 C 0.107 3.893 15 N -0.620 5.620 16 C 0.532 3.468 17 O -0.585 6.585 18 C -0.111 4.111 19 C -0.032 4.032 20 C 0.306 3.694 21 N -0.543 5.543 22 C 0.135 3.865 23 C -0.218 4.218 24 C 0.137 3.863 25 N -0.539 5.539 26 C 0.128 3.872 27 C 0.145 3.855 28 H 0.247 0.753 29 H 0.017 0.983 30 H 0.002 0.998 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.199 0.801 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -25.332 16.215 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.074 4.074 13 C -0.146 4.146 14 C -0.015 4.015 15 N -0.353 5.353 16 C 0.322 3.678 17 O -0.465 6.465 18 C -0.151 4.151 19 C -0.072 4.072 20 C 0.038 3.962 21 N -0.257 5.257 22 C -0.030 4.030 23 C -0.239 4.239 24 C -0.028 4.028 25 N -0.254 5.254 26 C 0.005 3.995 27 C 0.020 3.980 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.020 0.980 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.213 0.787 42 H 0.203 0.797 43 H 0.216 0.784 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.965 -25.048 14.852 29.136 hybrid contribution 0.518 1.065 0.279 1.217 sum 1.483 -23.983 15.132 28.396 Atomic orbital electron populations 1.70173 1.06097 1.25192 1.58341 1.25597 0.96645 1.00795 1.02761 0.85113 0.77692 0.79378 0.77357 1.21579 1.21862 1.19526 1.19405 0.90833 0.83862 1.42850 0.90514 1.44834 1.02560 1.00688 1.86942 1.20962 0.83347 0.91702 0.97714 1.22690 0.96432 0.95034 1.01185 1.21489 0.96203 0.92873 0.96880 1.22427 1.02490 0.96547 0.93094 1.22839 0.98459 0.89035 0.91133 1.49043 1.54523 1.19809 1.11939 1.20639 0.76435 0.79432 0.91251 1.90692 1.48246 1.65497 1.42091 1.21427 1.03929 0.95901 0.93868 1.19983 1.02447 0.94820 0.89905 1.23011 0.86022 0.91190 0.95960 1.68280 1.24998 1.26304 1.06140 1.23894 0.98202 0.89560 0.91297 1.23332 0.95957 1.00669 1.03958 1.23914 0.97371 0.94049 0.87473 1.68280 1.27740 1.09214 1.20177 1.21743 1.01868 0.88408 0.87459 1.21603 0.94754 0.84831 0.96814 0.94406 0.96487 0.97976 0.89002 0.91214 0.91782 0.89900 0.88519 0.87726 0.87424 0.86805 0.89325 0.89772 0.78709 0.79663 0.78440 0.90132 0.92051 0.96635 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 10.30 21.65 0.22 -56.73 16 2 C -0.06 -3.72 5.49 84.86 0.47 -3.26 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.22 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.24 -13.63 10.28 84.03 0.86 -12.77 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -32.07 3.41 -692.91 -2.36 -34.43 16 10 C 0.19 9.06 5.33 86.80 0.46 9.52 16 11 C -0.12 -3.94 5.65 31.38 0.18 -3.77 16 12 C -0.07 -2.34 0.75 -51.76 -0.04 -2.38 16 13 C -0.11 -2.95 6.12 31.45 0.19 -2.76 16 14 C 0.11 2.10 6.96 86.82 0.60 2.70 16 15 N -0.62 -15.65 3.31 -810.07 -2.68 -18.33 16 16 C 0.53 14.15 7.89 87.66 0.69 14.84 16 17 O -0.58 -20.24 16.33 -3.02 -0.05 -20.29 16 18 C -0.11 -2.13 4.62 29.85 0.14 -1.99 16 19 C -0.03 -0.69 4.94 29.85 0.15 -0.54 16 20 C 0.31 6.19 6.90 138.75 0.96 7.14 16 21 N -0.54 -10.41 10.33 -187.84 -1.94 -12.35 16 22 C 0.14 1.55 11.30 84.70 0.96 2.51 16 23 C -0.22 -1.58 10.17 22.44 0.23 -1.35 16 24 C 0.14 1.47 11.30 84.70 0.96 2.43 16 25 N -0.54 -9.90 10.33 -187.85 -1.94 -11.84 16 26 C 0.13 3.71 6.31 85.99 0.54 4.25 16 27 C 0.15 6.04 6.10 86.38 0.53 6.57 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.02 0.90 7.38 -2.39 -0.02 0.89 16 30 H 0.00 0.11 7.49 -2.39 -0.02 0.09 16 31 H 0.09 2.63 7.94 -2.39 -0.02 2.61 16 32 H 0.07 2.26 7.91 -2.39 -0.02 2.24 16 33 H 0.06 1.91 7.66 -2.39 -0.02 1.89 16 34 H 0.08 2.37 7.80 -2.38 -0.02 2.36 16 35 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 1.52 7.24 -2.39 -0.02 1.50 16 37 H 0.11 1.85 7.90 -2.39 -0.02 1.84 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 40 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 41 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.19 -0.15 8.06 -2.91 -0.02 -0.17 16 43 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.08 2.15 7.63 -2.39 -0.02 2.13 16 45 H 0.06 1.99 7.54 -2.39 -0.02 1.98 16 46 H 0.02 0.67 7.90 -2.39 -0.02 0.65 16 47 H 0.04 1.52 7.72 -2.39 -0.02 1.50 16 Total: -1.00 -77.90 379.91 2.11 -75.79 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.96 Total: 8.81 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 7.87 Total: 21.15 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -8.70 Total: -133.68 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -77.90 2.11 -75.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041747375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.739 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds